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  <front>
    <journal-meta>
      <journal-id journal-id-type="publisher-id">104</journal-id>
      <journal-id journal-id-type="index">urn:lsid:arphahub.com:pub:f2cd1fff-21e4-581f-a7fa-850997197b7f</journal-id>
      <journal-id journal-id-type="aggregator">urn:lsid:zoobank.org:pub:B1C81912-2D17-4CD8-8D2C-EFEAAAB2EF75</journal-id>
      <journal-title-group>
        <journal-title xml:lang="en">Vertebrate Zoology</journal-title>
        <abbrev-journal-title xml:lang="en">VZ</abbrev-journal-title>
      </journal-title-group>
      <issn pub-type="ppub">1864-5755</issn>
      <issn pub-type="epub">2625-8498</issn>
      <publisher>
        <publisher-name>Senckenberg Gesellschaft für Naturforschung</publisher-name>
      </publisher>
    </journal-meta>
    <article-meta>
      <article-id pub-id-type="doi">10.3897/vz.74.e125958</article-id>
      <article-id pub-id-type="publisher-id">125958</article-id>
      <article-categories>
        <subj-group subj-group-type="heading">
          <subject>Research Article</subject>
        </subj-group>
        <subj-group subj-group-type="biological_taxon">
          <subject>Emydidae</subject>
          <subject>Reptilia</subject>
          <subject>Testudines</subject>
        </subj-group>
        <subj-group subj-group-type="scientific_subject">
          <subject>Molecular systematics</subject>
          <subject>Phylogeny</subject>
          <subject>Taxonomy</subject>
        </subj-group>
      </article-categories>
      <title-group>
        <article-title><italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">Trachemys</tp:taxon-name-part></tp:taxon-name></italic> in Mexico and beyond: Beautiful turtles, taxonomic nightmare, and a mitochondrial poltergeist (<tp:taxon-name><tp:taxon-name-part taxon-name-part-type="order">Testudines</tp:taxon-name-part></tp:taxon-name>: <tp:taxon-name><tp:taxon-name-part taxon-name-part-type="family">Emydidae</tp:taxon-name-part></tp:taxon-name>)</article-title>
      </title-group>
      <contrib-group content-type="authors">
        <contrib contrib-type="author" corresp="yes">
          <name name-style="western">
            <surname>Fritz</surname>
            <given-names>Uwe</given-names>
          </name>
          <email xlink:type="simple">uwe.fritz@senckenberg.de</email>
          <uri content-type="orcid">https://orcid.org/0000-0002-6740-7214</uri>
          <xref ref-type="aff" rid="A1">1</xref>
        </contrib>
        <contrib contrib-type="author" corresp="no">
          <name name-style="western">
            <surname>Herrmann</surname>
            <given-names>Hans-Werner</given-names>
          </name>
          <uri content-type="orcid">https://orcid.org/0000-0002-2786-2167</uri>
          <xref ref-type="aff" rid="A2">2</xref>
        </contrib>
        <contrib contrib-type="author" corresp="no">
          <name name-style="western">
            <surname>Rosen</surname>
            <given-names>Philip C.</given-names>
          </name>
          <xref ref-type="other" rid="D1">†</xref>
          <xref ref-type="aff" rid="A2">2</xref>
        </contrib>
        <contrib contrib-type="author" corresp="no">
          <name name-style="western">
            <surname>Auer</surname>
            <given-names>Markus</given-names>
          </name>
          <xref ref-type="aff" rid="A1">1</xref>
        </contrib>
        <contrib contrib-type="author" corresp="no">
          <name name-style="western">
            <surname>Vargas-Ramírez</surname>
            <given-names>Mario</given-names>
          </name>
          <uri content-type="orcid">https://orcid.org/0000-0001-8974-3430</uri>
          <xref ref-type="aff" rid="A3">3</xref>
        </contrib>
        <contrib contrib-type="author" corresp="no">
          <name name-style="western">
            <surname>Kehlmaier</surname>
            <given-names>Christian</given-names>
          </name>
          <uri content-type="orcid">https://orcid.org/0000-0001-9622-0566</uri>
          <xref ref-type="aff" rid="A1">1</xref>
        </contrib>
      </contrib-group>
      <aff id="A1">
        <label>1</label>
        <addr-line>Senckenberg Dresden, Museum of Zoology, A. B. Meyer Building, 01109 Dresden, Germany</addr-line>
      </aff>
      <aff id="A2">
        <label>2</label>
        <addr-line>School of Natural Resources and the Environment, University of Arizona, ENR2, Tucson, AZ 85721, USA</addr-line>
      </aff>
      <aff id="A3">
        <label>3</label>
        <addr-line>Instituto de Genética, Universidad Nacional de Colombia, Sede Bogotá, Carrera 30 No 45-03, Bogotá, Colombia</addr-line>
      </aff>
      <aff id="A4">
        <label>4</label>
        <addr-line>Estación de Biología Tropical Roberto Franco (EBTRF), Universidad Nacional de Colombia, Carrera 33 #33-76, Barrio El Porvenir, Villavicencio, Colombia</addr-line>
      </aff>
      <aff id="D1">
        <label>†</label>
        <addr-line>Deceased
        </addr-line>
      </aff>
      <author-notes>
        <fn fn-type="corresp">
          <p>Corresponding author: Uwe Fritz (<email xlink:type="simple">uwe.fritz@senckenberg.de</email>)</p>
        </fn>
        <fn>
          <p>Academic editor Deepak Veerappan</p>
        </fn>
      </author-notes>
      <pub-date pub-type="collection">
        <year>2024</year>
      </pub-date>
      <pub-date pub-type="epub">
        <day>28</day>
        <month>06</month>
        <year>2024</year>
      </pub-date>
      <volume>74</volume>
      <fpage>435</fpage>
      <lpage>452</lpage>
      <uri content-type="arpha" xlink:href="http://openbiodiv.net/8401950E-E1E3-5525-9B0F-80B7204C0049">8401950E-E1E3-5525-9B0F-80B7204C0049</uri>
      <uri content-type="zoobank" xlink:href="http://zoobank.org/4E73F1C4-8DEE-40A2-BCCA-654CC1CE0002">4E73F1C4-8DEE-40A2-BCCA-654CC1CE0002</uri>
      <history>
        <date date-type="received">
          <day>22</day>
          <month>04</month>
          <year>2024</year>
        </date>
        <date date-type="accepted">
          <day>24</day>
          <month>06</month>
          <year>2024</year>
        </date>
      </history>
      <permissions>
        <copyright-statement>Uwe Fritz, Hans-Werner Herrmann, Philip C. Rosen, Markus Auer, Mario Vargas-Ramírez, Christian Kehlmaier</copyright-statement>
        <license license-type="creative-commons-attribution" xlink:href="http://creativecommons.org/licenses/by/4.0/" xlink:type="simple">
          <license-p>This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.</license-p>
        </license>
      </permissions>
      <self-uri content-type="zoobank" xlink:type="simple">http://zoobank.org/4E73F1C4-8DEE-40A2-BCCA-654CC1CE0002</self-uri>
      <abstract>
        <p>
          <bold>Abstract</bold>
        </p>
        <p><italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">Trachemys</tp:taxon-name-part></tp:taxon-name></italic> is a speciose genus of freshwater turtles distributed from the Great Lakes in North America across the southeastern USA, Mexico and Central America to the Rio de la Plata in South America, with up to 13 continental American species and 11 additional subspecies. Another four species with three additional subspecies occur on the West Indies. In the present study, we examine all continental <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">Trachemys</tp:taxon-name-part></tp:taxon-name></italic> taxa except for <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">Trachemys</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="hartwegi">hartwegi</tp:taxon-name-part></tp:taxon-name></italic> using mitochondrial and nuclear DNA sequences (3221 and 3396 bp, respectively) representing four mitochondrial genes and five nuclear loci. We also include representatives of all four West Indian species and discuss our results in the light of putative species-diagnostic traits in coloration and pattern. We provide evidence that one Mexican species, <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="nebulosa">nebulosa</tp:taxon-name-part></tp:taxon-name></italic>, has captured a deeply divergent foreign mitochondrial genome that renders the mitochondrial phylogeny of <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">Trachemys</tp:taxon-name-part></tp:taxon-name></italic> paraphyletic. Using nuclear markers, <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">Trachemys</tp:taxon-name-part></tp:taxon-name></italic> including <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="nebulosa">nebulosa</tp:taxon-name-part></tp:taxon-name></italic> represents a well-supported monophylum. Besides the mitochondrial lineage of <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="nebulosa">nebulosa</tp:taxon-name-part></tp:taxon-name></italic>, there are six additional mitochondrial <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">Trachemys</tp:taxon-name-part></tp:taxon-name></italic> lineages: (1) <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="venusta">venusta</tp:taxon-name-part></tp:taxon-name></italic>, (2) <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="ornata">ornata</tp:taxon-name-part></tp:taxon-name></italic> + <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="yaquia">yaquia</tp:taxon-name-part></tp:taxon-name></italic>, (3) <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="grayi">grayi</tp:taxon-name-part></tp:taxon-name></italic>, (4) <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="dorbigni">dorbigni</tp:taxon-name-part></tp:taxon-name></italic> + <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="medemi">medemi</tp:taxon-name-part></tp:taxon-name></italic>, (5) <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="gaigeae">gaigeae</tp:taxon-name-part></tp:taxon-name></italic> + <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="scripta">scripta</tp:taxon-name-part></tp:taxon-name></italic>, and (6) West Indian <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">Trachemys</tp:taxon-name-part></tp:taxon-name></italic>. These six mitochondrial lineages constitute a well-supported clade. Each mitochondrial <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">Trachemys</tp:taxon-name-part></tp:taxon-name></italic> lineage is corroborated by our nuclear markers. For <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="gaigeae">gaigeae</tp:taxon-name-part></tp:taxon-name></italic> another mitochondrial capture event is likely because its mitochondrial genome is sister to <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="scripta">scripta</tp:taxon-name-part></tp:taxon-name></italic>, although <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="gaigeae">gaigeae</tp:taxon-name-part></tp:taxon-name></italic> is deeply divergent in nuclear markers and resembles Mexican, Central and South American <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">Trachemys</tp:taxon-name-part></tp:taxon-name></italic> species in morphology, sexual dimorphism and courtship behavior. The two subspecies of <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="nebulosa">nebulosa</tp:taxon-name-part></tp:taxon-name></italic> and many Mexican and Central American subspecies of <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="venusta">venusta</tp:taxon-name-part></tp:taxon-name></italic> are not clearly distinct in our studied genetic markers. Also, the putatively diagnostic coloration and pattern traits of the <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="venusta">venusta</tp:taxon-name-part></tp:taxon-name></italic> subspecies are more variable than previously reported, challenging their validity. Our analyses fail to identify <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="taylori">taylori</tp:taxon-name-part></tp:taxon-name></italic> as a lineage distinct from <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="venusta">venusta</tp:taxon-name-part></tp:taxon-name></italic> and we propose to assign it as a subspecies to the latter species (<italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">Trachemys</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="venusta">venusta</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="taylori">taylori</tp:taxon-name-part></tp:taxon-name></italic><bold>nov. comb.</bold>).</p>
      </abstract>
      <kwd-group>
        <label>Keywords</label>
        <kwd>Central America</kwd>
        <kwd>integrative taxonomy</kwd>
        <kwd>Mesoamerica</kwd>
        <kwd>mitochondrial capture</kwd>
        <kwd>museomics</kwd>
        <kwd>North America</kwd>
        <kwd>phylogeny</kwd>
        <kwd>South ­America</kwd>
      </kwd-group>
    </article-meta>
    <notes>
      <sec sec-type="Citation" id="SECID0EXGAC">
        <title>Citation</title>
        <p>Fritz U, Herrmann H-W, Rosen PC, Auer M, Vargas-Ramírez M, Kehlmaier C (2024) <italic>Trachemys</italic> in Mexico and beyond: Beautiful turtles, taxonomic nightmare, and a mitochondrial poltergeist (Testudines: Emydidae). Vertebrate Zoology 74 435–452. <ext-link xlink:href="10.3897/vz.74.e125958" ext-link-type="doi" xlink:type="simple">https://doi.org/10.3897/vz.74.e125958</ext-link></p>
      </sec>
    </notes>
  </front>
  <body>
    <sec sec-type="Introduction" id="SECID0ETHAC">
      <title>Introduction</title>
      <p><italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">Trachemys</tp:taxon-name-part></tp:taxon-name></italic> is a speciose and widely distributed genus of freshwater turtles (family <tp:taxon-name><tp:taxon-name-part taxon-name-part-type="family">Emydidae</tp:taxon-name-part></tp:taxon-name>) occurring from the North American Great Lakes region through Central America to northern South America. Widely disjunct populations live in northeastern Brazil (Maranhão, Piauí) and in the Rio de la Plata region of Argentina, southern Brazil and Uruguay (TTWG 2021; Fig. <xref ref-type="fig" rid="F1">1</xref>). Thus, the genus ranges in north-south direction across a linear distance of more than 8200 km.</p>
      <fig id="F1" position="float" orientation="portrait">
        <object-id content-type="doi">10.3897/vz.74.e125958.figure1</object-id>
        <object-id content-type="arpha">20FA733B-1BDD-5883-A3EE-7D4FA059284B</object-id>
        <label>Figure 1.</label>
        <caption>
          <p>Distribution of <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">Trachemys</tp:taxon-name-part></tp:taxon-name></italic> taxa (only putatively native occurrences). Map is compiled from species distribution maps in TTWG (2021), except for the ranges of <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">Trachemys</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="grayi">grayi</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="emolli">emolli</tp:taxon-name-part></tp:taxon-name></italic> and <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="grayi">g.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="panamensis">panamensis</tp:taxon-name-part></tp:taxon-name></italic>. Populations south of Chiriquí Lagoon along the Caribbean coast of Panama are tentatively assigned to <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="grayi">g.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="panamensis">panamensis</tp:taxon-name-part></tp:taxon-name></italic> (see discussion in <xref ref-type="bibr" rid="B13">Fritz et al. 2023</xref>). Inset picture: <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="nebulosa">n.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="nebulosa">nebulosa</tp:taxon-name-part></tp:taxon-name></italic> (photo: A. Monsiváis).</p>
        </caption>
        <graphic xlink:href="vertebrate-zoology-74-435-g001.jpg" position="float" orientation="portrait" xlink:type="simple" id="oo_1080968.jpg">
          <uri content-type="original_file">https://binary.pensoft.net/fig/1080968</uri>
        </graphic>
      </fig>
      <p>Continental America is home to up to 13 <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">Trachemys</tp:taxon-name-part></tp:taxon-name></italic> species and 11 additional subspecies (TTWG 2021). Four further species with three additional subspecies occur on the West Indies. We follow <xref ref-type="bibr" rid="B14">Fritz et al. (2012</xref>, <xref ref-type="bibr" rid="B13">2023</xref>) and recognize, besides the West Indian taxa, 11 continental <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">Trachemys</tp:taxon-name-part></tp:taxon-name></italic> species with additional 11 subspecies (Table <xref ref-type="table" rid="T1">1</xref>). <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">Trachemys</tp:taxon-name-part></tp:taxon-name></italic> is a morphologically diverse genus, with taxa having a variegated ornamental pattern involving colorful ocelli, spots or streaks that are particularly obvious in hatchlings and juveniles. The maximum carapacial length of <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">Trachemys</tp:taxon-name-part></tp:taxon-name></italic> ranges from 21 to 55 cm (straight line), with the largest taxa occurring in Central America (TTWG 2021). <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">Trachemys</tp:taxon-name-part></tp:taxon-name></italic> are known as slider turtles, and their best-known representative is the red-eared slider (<italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="scripta">scripta</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="elegans">elegans</tp:taxon-name-part></tp:taxon-name></italic>), a subspecies of <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="scripta">scripta</tp:taxon-name-part></tp:taxon-name></italic>, widely distributed in the southcentral USA and adjacent Mexico. It has been introduced to many countries (TTWG 2021) and is listed among the 100 worst invasive species of the world (<xref ref-type="bibr" rid="B35">Lowe et al. 2004</xref>). Sliders, short for slider turtles, are omnivorous and occur in a variety of freshwater habitats, with a general preference for quiet waters with soft bodies, rich aquatic vegetation and suitable basking sites (<xref ref-type="bibr" rid="B7">Ernst and Barbour 1989</xref>). Males of some species display a complex innate courtship behavior that most likely acts as an isolating mechanism (Fritz et al. 1990). In some taxa the courtship behavior involves trembling movements of the grotesquely elongated claws of the forefeet (Fig. <xref ref-type="fig" rid="F2">2</xref>) in front of the face of the female (<italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="scripta">scripta</tp:taxon-name-part></tp:taxon-name></italic>, Antillean species), the so-called “titillation behavior.” In <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="gaigeae">gaigeae</tp:taxon-name-part></tp:taxon-name></italic> and <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="venusta">venusta</tp:taxon-name-part></tp:taxon-name></italic>, and probably in most Central and South American taxa, males instead perform vibrating or bobbing head movements in a vertical plane in front of the female’s head. These head movements are emphasized sometimes by considerably elongated and upturned snouts (Fig. <xref ref-type="fig" rid="F3">3</xref>). However, neither of these behaviors have been described for the courtship of <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="taylori">taylori</tp:taxon-name-part></tp:taxon-name></italic> (<xref ref-type="bibr" rid="B7">Ernst and Barbour 1989</xref>; <xref ref-type="bibr" rid="B10">Fritz 1990</xref>; <xref ref-type="bibr" rid="B33">Legler and Vogt 2013</xref>; <xref ref-type="bibr" rid="B57">Seidel and Ernst 2017</xref>).</p>
      <table-wrap id="T1" position="float" orientation="portrait">
        <label>Table 1.</label>
        <caption>
          <p><italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">Trachemys</tp:taxon-name-part></tp:taxon-name></italic> species recognized in the present study and their subspecies, with approximate distribution ranges from TTWG (2021) and <xref ref-type="bibr" rid="B13">Fritz et al. (2023</xref>; see there and Fig. <xref ref-type="fig" rid="F1">1</xref> for more information). Genetic data were available for taxa bearing asterisks.</p>
        </caption>
        <table id="TID0EW6AI" rules="all">
          <tbody>
            <tr>
              <td rowspan="1" colspan="2">
                <bold>Taxon</bold>
              </td>
              <td rowspan="1" colspan="1">
                <bold>Distribution</bold>
              </td>
            </tr>
            <tr>
              <td rowspan="1" colspan="2"><italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">Trachemys</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="decorata">decorata</tp:taxon-name-part></tp:taxon-name></italic> (Barbour &amp; Carr, 1940)*</td>
              <td rowspan="1" colspan="1">Hispaniola</td>
            </tr>
            <tr>
              <td rowspan="1" colspan="2"><italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">Trachemys</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="decussata">decussata</tp:taxon-name-part></tp:taxon-name></italic> (Bell, 1830)</td>
              <td rowspan="1" colspan="1"/>
            </tr>
            <tr>
              <td rowspan="1" colspan="1"/>
              <td rowspan="1" colspan="1"><italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">Trachemys</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="decussata">decussata</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="decussata">decussata</tp:taxon-name-part></tp:taxon-name></italic> (Bell, 1830)*</td>
              <td rowspan="1" colspan="1">Cuba, Jamaica</td>
            </tr>
            <tr>
              <td rowspan="1" colspan="1"/>
              <td rowspan="1" colspan="1"><italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">Trachemys</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="decussata">decussata</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="angusta">angusta</tp:taxon-name-part></tp:taxon-name></italic> (Barbour &amp; Carr, 1940)*</td>
              <td rowspan="1" colspan="1">Cayman Islands, Cuba</td>
            </tr>
            <tr>
              <td rowspan="1" colspan="2"><italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">Trachemys</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="dorbigni">dorbigni</tp:taxon-name-part></tp:taxon-name></italic> (Duméril &amp; Bibron, 1835)</td>
              <td rowspan="1" colspan="1"/>
            </tr>
            <tr>
              <td rowspan="1" colspan="1"/>
              <td rowspan="1" colspan="1"><italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">Trachemys</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="dorbigni">dorbigni</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="dorbigni">dorbigni</tp:taxon-name-part></tp:taxon-name></italic> (Duméril &amp; Bibron, 1835)*</td>
              <td rowspan="1" colspan="1">Argentina, southern Brazil, Uruguay</td>
            </tr>
            <tr>
              <td rowspan="1" colspan="1"/>
              <td rowspan="1" colspan="1"><italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">Trachemys</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="dorbigni">dorbigni</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="adiutrix">adiutrix</tp:taxon-name-part></tp:taxon-name></italic> Vanzolini, 1995*</td>
              <td rowspan="1" colspan="1">Northern Brazil</td>
            </tr>
            <tr>
              <td rowspan="1" colspan="2"><italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">Trachemys</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="gaigeae">gaigeae</tp:taxon-name-part></tp:taxon-name></italic> (Hartweg, 1939)*</td>
              <td rowspan="1" colspan="1">Northern Mexico, adjacent USA</td>
            </tr>
            <tr>
              <td rowspan="1" colspan="2"><italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">Trachemys</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="grayi">grayi</tp:taxon-name-part></tp:taxon-name></italic> (Bocourt, 1868)</td>
              <td rowspan="1" colspan="1"/>
            </tr>
            <tr>
              <td rowspan="1" colspan="1"/>
              <td rowspan="1" colspan="1"><italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">Trachemys</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="grayi">grayi</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="grayi">grayi</tp:taxon-name-part></tp:taxon-name></italic> (Bocourt, 1868)*</td>
              <td rowspan="1" colspan="1">El Salvador, Guatemala, adjacent Mexico</td>
            </tr>
            <tr>
              <td rowspan="1" colspan="1"/>
              <td rowspan="1" colspan="1"><italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">Trachemys</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="grayi">grayi</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="emolli">emolli</tp:taxon-name-part></tp:taxon-name></italic> (Legler, 1990)*</td>
              <td rowspan="1" colspan="1">Costa Rica, El Salvador, Honduras, Nicaragua, Panama</td>
            </tr>
            <tr>
              <td rowspan="1" colspan="1"/>
              <td rowspan="1" colspan="1"><italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">Trachemys</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="grayi">grayi</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="panamensis">panamensis</tp:taxon-name-part></tp:taxon-name></italic> McCord, Joseph-Ouni &amp; Blanck, 2010*</td>
              <td rowspan="1" colspan="1">Costa Rica, Panama</td>
            </tr>
            <tr>
              <td rowspan="1" colspan="2"><italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">Trachemys</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="hartwegi">hartwegi</tp:taxon-name-part></tp:taxon-name></italic> (Legler, 1990)</td>
              <td rowspan="1" colspan="1">Northern Mexico</td>
            </tr>
            <tr>
              <td rowspan="1" colspan="2"><italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">Trachemys</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="medemi">medemi</tp:taxon-name-part></tp:taxon-name></italic> Vargas-Ramírez, del Valle, Ceballos &amp; Fritz, 2017*</td>
              <td rowspan="1" colspan="1">Northern Colombia</td>
            </tr>
            <tr>
              <td rowspan="1" colspan="2"><italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">Trachemys</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="nebulosa">nebulosa</tp:taxon-name-part></tp:taxon-name></italic> (Van Denburgh, 1895)</td>
              <td rowspan="1" colspan="1"/>
            </tr>
            <tr>
              <td rowspan="1" colspan="1"/>
              <td rowspan="1" colspan="1"><italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">Trachemys</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="nebulosa">nebulosa</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="nebulosa">nebulosa</tp:taxon-name-part></tp:taxon-name></italic> (Van Denburgh, 1895)*</td>
              <td rowspan="1" colspan="1">Northern Mexico</td>
            </tr>
            <tr>
              <td rowspan="1" colspan="1"/>
              <td rowspan="1" colspan="1"><italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">Trachemys</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="nebulosa">nebulosa</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="hiltoni">hiltoni</tp:taxon-name-part></tp:taxon-name></italic> (Carr, 1942)*</td>
              <td rowspan="1" colspan="1">Northern Mexico</td>
            </tr>
            <tr>
              <td rowspan="1" colspan="2"><italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">Trachemys</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="ornata">ornata</tp:taxon-name-part></tp:taxon-name></italic> (Gray, 1830)*</td>
              <td rowspan="1" colspan="1">Northern Mexico</td>
            </tr>
            <tr>
              <td rowspan="1" colspan="2"><italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">Trachemys</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="scripta">scripta</tp:taxon-name-part></tp:taxon-name></italic> (Schoepff, 1792)</td>
              <td rowspan="1" colspan="1"/>
            </tr>
            <tr>
              <td rowspan="1" colspan="1"/>
              <td rowspan="1" colspan="1"><italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">Trachemys</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="scripta">scripta</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="scripta">scripta</tp:taxon-name-part></tp:taxon-name></italic> (Schoepff, 1792)*</td>
              <td rowspan="1" colspan="1">Southeastern USA</td>
            </tr>
            <tr>
              <td rowspan="1" colspan="1"/>
              <td rowspan="1" colspan="1"><italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">Trachemys</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="scripta">scripta</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="elegans">elegans</tp:taxon-name-part></tp:taxon-name></italic> (Wied-Neuwied, 1839)*</td>
              <td rowspan="1" colspan="1">Southcentral USA, adjacent Mexico</td>
            </tr>
            <tr>
              <td rowspan="1" colspan="1"/>
              <td rowspan="1" colspan="1"><italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">Trachemys</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="scripta">scripta</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="troostii">troostii</tp:taxon-name-part></tp:taxon-name></italic> (Holbrook, 1836)*</td>
              <td rowspan="1" colspan="1">Southeastern USA</td>
            </tr>
            <tr>
              <td rowspan="1" colspan="2"><italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">Trachemys</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="stejnegeri">stejnegeri</tp:taxon-name-part></tp:taxon-name></italic> (Schmidt, 1928)</td>
              <td rowspan="1" colspan="1"/>
            </tr>
            <tr>
              <td rowspan="1" colspan="1"/>
              <td rowspan="1" colspan="1"><italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">Trachemys</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="stejnegeri">stejnegeri</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="stejnegeri">stejnegeri</tp:taxon-name-part></tp:taxon-name></italic> (Schmidt, 1928)</td>
              <td rowspan="1" colspan="1">Puerto Rico</td>
            </tr>
            <tr>
              <td rowspan="1" colspan="1"/>
              <td rowspan="1" colspan="1"><italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">Trachemys</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="stejnegeri">stejnegeri</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="malonei">malonei</tp:taxon-name-part></tp:taxon-name></italic> (Barbour &amp; Carr, 1940)</td>
              <td rowspan="1" colspan="1">Bahamas (Inagua)</td>
            </tr>
            <tr>
              <td rowspan="1" colspan="1"/>
              <td rowspan="1" colspan="1"><italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">Trachemys</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="stejnegeri">stejnegeri</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="vicina">vicina</tp:taxon-name-part></tp:taxon-name></italic> (Barbour &amp; Carr, 1940)*</td>
              <td rowspan="1" colspan="1">Hispaniola</td>
            </tr>
            <tr>
              <td rowspan="1" colspan="2"><italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">Trachemys</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="taylori">taylori</tp:taxon-name-part></tp:taxon-name></italic> (Legler, 1960)*</td>
              <td rowspan="1" colspan="1">Northern Mexico</td>
            </tr>
            <tr>
              <td rowspan="1" colspan="2"><italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">Trachemys</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="terrapen">terrapen</tp:taxon-name-part></tp:taxon-name></italic> (Bonnaterre, 1789)*</td>
              <td rowspan="1" colspan="1">Bahamas, Jamaica</td>
            </tr>
            <tr>
              <td rowspan="1" colspan="2">
                <italic>
                  <tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">Trachemys</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="venusta">venusta</tp:taxon-name-part></tp:taxon-name>
                </italic>
              </td>
              <td rowspan="1" colspan="1"/>
            </tr>
            <tr>
              <td rowspan="1" colspan="1"/>
              <td rowspan="1" colspan="1"><italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">Trachemys</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="venusta">venusta</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="venusta">venusta</tp:taxon-name-part></tp:taxon-name></italic> (Gray, 1856)*</td>
              <td rowspan="1" colspan="1">Belize, Guatemala, southern Mexico</td>
            </tr>
            <tr>
              <td rowspan="1" colspan="1"/>
              <td rowspan="1" colspan="1"><italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">Trachemys</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="venusta">venusta</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="callirostris">callirostris</tp:taxon-name-part></tp:taxon-name></italic> (Gray, 1856)*</td>
              <td rowspan="1" colspan="1">Northern Colombia, Venezuela</td>
            </tr>
            <tr>
              <td rowspan="1" colspan="1"/>
              <td rowspan="1" colspan="1"><italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">Trachemys</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="venusta">venusta</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="chichiriviche">chichiriviche</tp:taxon-name-part></tp:taxon-name></italic> (Pritchard &amp; Trebbau, 1984)*</td>
              <td rowspan="1" colspan="1">Venezuela</td>
            </tr>
            <tr>
              <td rowspan="1" colspan="1"/>
              <td rowspan="1" colspan="1"><italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">Trachemys</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="venusta">venusta</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="cataspila">cataspila</tp:taxon-name-part></tp:taxon-name></italic> (Günther, 1885)*</td>
              <td rowspan="1" colspan="1">Northern Mexico</td>
            </tr>
            <tr>
              <td rowspan="1" colspan="1"/>
              <td rowspan="1" colspan="1"><italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">Trachemys</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="venusta">venusta</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="iversoni">iversoni</tp:taxon-name-part></tp:taxon-name></italic> McCord, Joseph-Ouni &amp; Blanck, 2010*</td>
              <td rowspan="1" colspan="1">Southern Mexico</td>
            </tr>
            <tr>
              <td rowspan="1" colspan="1"/>
              <td rowspan="1" colspan="1"><italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">Trachemys</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="venusta">venusta</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="uhrigi">uhrigi</tp:taxon-name-part></tp:taxon-name></italic> McCord, Joseph-Ouni &amp; Blanck, 2010*</td>
              <td rowspan="1" colspan="1">Guatemala, Honduras, Nicaragua</td>
            </tr>
            <tr>
              <td rowspan="1" colspan="2"><italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">Trachemys</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="yaquia">yaquia</tp:taxon-name-part></tp:taxon-name></italic> (Legler &amp; Webb, 1970)*</td>
              <td rowspan="1" colspan="1">Northern Mexico</td>
            </tr>
          </tbody>
        </table>
      </table-wrap>
      <fig id="F2" position="float" orientation="portrait">
        <object-id content-type="doi">10.3897/vz.74.e125958.figure2</object-id>
        <object-id content-type="arpha">C423BC7D-DCC2-5BA7-ADFD-05EE057E0F44</object-id>
        <label>Figure 2.</label>
        <caption>
          <p>Elongated foreclaws of a male (left) <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">Trachemys</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="scripta">scripta</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="elegans">elegans</tp:taxon-name-part></tp:taxon-name></italic> compared to a female (right). From <xref ref-type="bibr" rid="B10">Fritz (1990</xref>, redrawn from <xref ref-type="bibr" rid="B4">Cagle 1948</xref>).</p>
        </caption>
        <graphic xlink:href="vertebrate-zoology-74-435-g002.jpg" position="float" orientation="portrait" xlink:type="simple" id="oo_1080969.jpg">
          <uri content-type="original_file">https://binary.pensoft.net/fig/1080969</uri>
        </graphic>
      </fig>
      <fig id="F3" position="float" orientation="portrait">
        <object-id content-type="doi">10.3897/vz.74.e125958.figure3</object-id>
        <object-id content-type="arpha">5D18FE1D-360D-54D1-A7B7-0EAAB34EEDCB</object-id>
        <label>Figure 3.</label>
        <caption>
          <p>Sexual dimorphism in Central and South American slider turtles. Left, male <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">Trachemys</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="grayi">grayi</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="panamensis">panamensis</tp:taxon-name-part></tp:taxon-name></italic>, Juan Mina near Colón, Panama; center, male <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="venusta">v.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="venusta">venusta</tp:taxon-name-part></tp:taxon-name></italic>, Tlacotalpan, Veracruz, Mexico; right, female <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="grayi">g.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="panamensis">panamensis</tp:taxon-name-part></tp:taxon-name></italic>, Juan Mina near Colón, Panama. Note the elongated and upturned snouts in the males. From <xref ref-type="bibr" rid="B10">Fritz (1990</xref>, turtles from Panama redrawn from <xref ref-type="bibr" rid="B45">Moll and Legler 1971</xref>).</p>
        </caption>
        <graphic xlink:href="vertebrate-zoology-74-435-g003.jpg" position="float" orientation="portrait" xlink:type="simple" id="oo_1080970.jpg">
          <uri content-type="original_file">https://binary.pensoft.net/fig/1080970</uri>
        </graphic>
      </fig>
      <p>For slider turtles, taxonomy is notoriously unstable. Both species delimitation and the number of recognized taxa have been contentious for decades (e.g., <xref ref-type="bibr" rid="B45">Moll and Legler 1971</xref>, <xref ref-type="bibr" rid="B6">Ernst 1990</xref>; <xref ref-type="bibr" rid="B10">Fritz 1990</xref>; <xref ref-type="bibr" rid="B32">Legler 1990</xref>; <xref ref-type="bibr" rid="B55">Seidel 2002</xref>; <xref ref-type="bibr" rid="B14">Fritz et al. 2012</xref>, <xref ref-type="bibr" rid="B13">2023</xref>; <xref ref-type="bibr" rid="B33">Legler and Vogt 2013</xref>; <xref ref-type="bibr" rid="B47">Parham et al. 2015</xref>; see also the reviews in <xref ref-type="bibr" rid="B57">Seidel and Ernst 2017</xref> and TTWG 2021). <xref ref-type="bibr" rid="B33">Legler and Vogt (2013)</xref> still advocated a single widely distributed polytypic species <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="scripta">scripta</tp:taxon-name-part></tp:taxon-name></italic> ranging from southern Michigan, USA, to the Rio de la Plata region of temperate South America, in contrast to the up to 13 <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">Trachemys</tp:taxon-name-part></tp:taxon-name></italic> species recognized by the Turtle Taxonomy Working Group (TTWG 2021).</p>
      <p>Expanding previously published data from our lab (<xref ref-type="bibr" rid="B14">Fritz et al. 2012</xref>, <xref ref-type="bibr" rid="B13">2023</xref>; <xref ref-type="bibr" rid="B69">Vargas-Ramírez et al. 2017</xref>; <xref ref-type="bibr" rid="B67">Vamberger et al. 2020</xref>), we focus here on the diversity of Mexican and Central American species and subspecies, where 15 taxa are thought to occur (Table <xref ref-type="table" rid="T1">1</xref>). We included all but one of the 22 continental American species and subspecies and representatives of all four West Indian species in the present investigation. The only missing continental taxon is <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="hartwegi">hartwegi</tp:taxon-name-part></tp:taxon-name></italic> from northern Mexico, which was originally described by <xref ref-type="bibr" rid="B32">Legler (1990)</xref> as a subspecies of <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="gaigeae">gaigeae</tp:taxon-name-part></tp:taxon-name></italic>. As in our previous publications, we generate mitochondrial and nuclear DNA sequences to infer phylogeny and differentiation and place our results in a taxonomic and biogeographic context. As far as possible, we also use previously published information on external morphology, although the present study does not aim to provide an in-depth assessment of these traits and their taxonomic value. Based on these different lines of evidence, we develop the most complete taxonomic framework for <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">Trachemys</tp:taxon-name-part></tp:taxon-name></italic> to date.</p>
    </sec>
    <sec sec-type="materials|methods" id="SECID0E2BAG">
      <title>Materials and Methods</title>
      <p>For 43 <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">Trachemys</tp:taxon-name-part></tp:taxon-name></italic> samples (Table S1) the following mitochondrial genes were sequenced: 12S (partial), ND4L (complete), ND4 (complete), and cyt <italic>b</italic> (complete plus part of the adjacent tRNA-Thr gene). In addition, partial sequences of the nuclear loci Cmos (coding), ODC (exon 6, intron 6, exon 7, intron 7), R35 (intron 1), Rag1 (coding), and Rag2 (coding) were generated. Sequences from the present study are available under the European Nucleotide Archive (<abbrev xlink:title="European Nucleotide Archive" id="ABBRID0EOCAG">ENA</abbrev>) project accession number PRJEB75327; individual accession numbers are listed in Table S1. According to the state of preservation of the samples, we used different workflows.</p>
      <p><bold>Sanger sequencing.</bold> For 21 blood samples stored at –80°C as well as four additional samples of extracted DNA stored at –20°C we Sanger-sequenced the mentioned loci as described in <xref ref-type="bibr" rid="B14">Fritz et al. (2012)</xref> and <xref ref-type="bibr" rid="B69">Vargas-Ramírez et al. (2017)</xref>. All reaction products were purified using SephadexTM G-50 fine (GE Healthcare). For selected samples including those of <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="nebulosa">n.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="nebulosa">nebulosa</tp:taxon-name-part></tp:taxon-name></italic> and <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="nebulosa">n.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="hiltoni">hiltoni</tp:taxon-name-part></tp:taxon-name></italic>, the long-range PCR approach described in <xref ref-type="bibr" rid="B14">Fritz et al. (2012)</xref> was used to corroborate that authentic mtDNA was sequenced.</p>
      <p><bold>Next Generation Sequencing (<abbrev xlink:title="Next Generation Sequencing" id="ABBRID0EIEAG">NGS</abbrev>) and in-solution hybridization capture.</bold> Eighteen further samples were taken from museum specimens (preserved between 1936 and 1996). Sequence data for this material were generated by an <abbrev xlink:title="Next Generation Sequencing" id="ABBRID0ENEAG">NGS</abbrev> approach including two rounds of in-solution hybridization capture. The historic material was processed in a cleanroom facility, physically isolated from the main laboratory, to avoid contamination by foreign DNA according to <xref ref-type="bibr" rid="B15">Fulton and Shapiro (2019)</xref>. DNA extraction was performed using the protocol by <xref ref-type="bibr" rid="B48">Patzold et al. (2020)</xref> with slight modifications (see Table S2) or Qiagen’s DNeasy Blood &amp; Tissue Kit according to the manufacturer’s protocol, with a final elution of two times 50 µl elution buffer. Prior to the preparation of the Illumina sequencing libraries, DNA concentration and fragment length were assessed using a Qubit 3.0 Fluorometer (Thermo Fisher Scientific) and a 4200 TapeStation system (Agilent). Where necessary, DNA was sheared down to an average length of 150 bp using a Covaris M220 ultrasonicator. Subsequently, DNA of four samples was converted into single-indexed, double-stranded DNA libraries (<bold><abbrev xlink:title="double-stranded DNA libraries" id="ABBRID0E5EAG">dsLibs</abbrev></bold>) according to <xref ref-type="bibr" rid="B43">Meyer and Kircher (2010)</xref> with modifications by <xref ref-type="bibr" rid="B9">Fortes and Paijmans (2015)</xref>. Due to a possible preservation with formalin, the remaining 14 historic samples were converted into double-indexed, single-stranded DNA libraries (<bold><abbrev xlink:title="single-stranded DNA libraries" id="ABBRID0ELFAG">ssLibs</abbrev></bold>) according to Gans­auge and Meyer (2019). In order to increase the amount of the targeted loci in all DNA libraries, two-rounds of in-solution hybridization capture (<xref ref-type="bibr" rid="B36">Maricic et al. 2010</xref>; <xref ref-type="bibr" rid="B22">Horn 2012</xref>) were performed in a dedicated capture-only workspace in the main laboratory using DNA baits generated from modern PCR products. For the mtDNA bait library, two long-range PCR reactions were performed (LR1 and LR2) using a sample of <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">Trachemys</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="venusta">venusta</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="callirostris">callirostris</tp:taxon-name-part></tp:taxon-name></italic> (MTD T 4728), yielding amplicons with an overlap of 1136 bp and an individual length of 11,760 bp (LR1) and 6686 bp (LR2). The combined long-range PCR products covered most of the mitochondrial genome (mitogenome) from tRNA-Phe (situated before 12S) to the 3’-end of the control region, missing out approximately 200 bp. By aiming at large stretches of mtDNA, the risk of amplifying nuclear copies of mitochondrial DNA (numts), which are an issue in <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">Trachemys</tp:taxon-name-part></tp:taxon-name></italic>, is minimized (<xref ref-type="bibr" rid="B1">Bensasson et al. 2001</xref>; <xref ref-type="bibr" rid="B14">Fritz et al. 2012</xref>). For each long-range PCR, a 50 μl volume was used, containing 1 unit of TaKaRa LA Taq DNA Polymerase, Hot-Start Version (Clontech Laboratories Inc.), and the reaction mixture recommended by the manufacturer. PCR conditions comprised initial denaturation at 93°C for 3 min, followed by 35 cycles of 93°C for 20 sec, 57°C for 30 sec, 68°C for 12 min, and a final elongation step at 68°C for 20 min; for primer sequences see Table S3. PCR products were visualized and excised from a 2% agarose gel and purified using the NucleoSpin Gel and PCR Clean-up Kit (Macherey-Nagel). After pooling both long-range products at an equimolar rate, the baits were sheared down to 150 bp and converted into the mtDNA bait library. The nDNA bait library was produced from PCR products of <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="venusta">v.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="callirostris">callirostris</tp:taxon-name-part></tp:taxon-name></italic> (MTD T 4728) and <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="scripta">scripta</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="elegans">elegans</tp:taxon-name-part></tp:taxon-name></italic> (MTD T 12680) obtained as detailed in <xref ref-type="bibr" rid="B14">Fritz et al. (2012)</xref> and <xref ref-type="bibr" rid="B49">Praschag et al. (2017)</xref>; primer sequences are given in Table S3. The PCR products for the five nuclear loci were pooled at an equimolar rate, sheared down to 150 bp and converted into the nDNA bait library. Prior to capturing, the mtDNA and nDNA bait libraries were adjusted to the same molarity and mixed at a ratio of 1:5 (for <abbrev xlink:title="double-stranded DNA libraries" id="ABBRID0EDIAG">dsLibs</abbrev>) or 1:10 (for <abbrev xlink:title="single-stranded DNA libraries" id="ABBRID0EHIAG">ssLibs</abbrev>) to account for the lower numbers of nuclear target molecules in the DNA libraries of the individual samples. Sequencing was performed in-house on an Illumina MiSeq platform, generating 75 bp-long paired-end reads.</p>
      <p><bold>Bioinformatics.</bold><abbrev xlink:title="Next Generation Sequencing" id="ABBRID0EPIAG">NGS</abbrev> sequence data were assembled using the following pipeline: After adapter trimming with Skewer 0.2.2 (<xref ref-type="bibr" rid="B26">Jiang et al. 2014</xref>), read merging (minimum length 35 bp), quality filtering (minimum Q-score 20), and duplicate removal with BBmap-suite 37.24 (<ext-link xlink:href="https://sourceforge.net/projects/bbmap/" ext-link-type="uri" xlink:type="simple">https://sourceforge.net/projects/bbmap</ext-link>) (<xref ref-type="bibr" rid="B3">Bushnell et al. 2017</xref>), the remaining reads (<bold>readpool-0</bold>) were screened for contamination using FastQScreen 0.11.4 (<xref ref-type="bibr" rid="B72">Wingett and Andrews 2018</xref>) and a set of predefined mitochondrial and nuclear sequences (Table S4), including the mitogenome of <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="scripta">s.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="elegans">elegans</tp:taxon-name-part></tp:taxon-name></italic> (GenBank accession number <ext-link ext-link-type="gen" xlink:href="KM216748" xlink:type="simple">KM216748</ext-link>) and a concatenated sequence of the five nuclear loci of one specimen of <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="medemi">medemi</tp:taxon-name-part></tp:taxon-name></italic> (<ext-link ext-link-type="gen" xlink:href="LT883198" xlink:type="simple">LT883198</ext-link>, <ext-link ext-link-type="gen" xlink:href="LT883245" xlink:type="simple">LT883245</ext-link>, <ext-link ext-link-type="gen" xlink:href="LT883260" xlink:type="simple">LT883260</ext-link>, <ext-link ext-link-type="gen" xlink:href="LT883222" xlink:type="simple">LT883222</ext-link>, <ext-link ext-link-type="gen" xlink:href="LT883234" xlink:type="simple">LT883234</ext-link>)—the individual loci being separated by stretches of 2000 ambiguous sites (Ns) to prevent mapping artifacts. The identified non-<italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">Trachemys</tp:taxon-name-part></tp:taxon-name></italic> reads were excluded from the individual readpools, and the remaining reads were stored as <bold>readpool-1</bold>. Reads only mapping to the mitogenome of <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="scripta">s.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="elegans">elegans</tp:taxon-name-part></tp:taxon-name></italic> were stored as <bold>readpool-2</bold>. Near-complete mitogenomes were assembled using MITObim (<xref ref-type="bibr" rid="B19">Hahn et al. 2013</xref>), a two-step baiting and iterative mapping approach, readpool-1 (<abbrev xlink:title="single-stranded DNA libraries" id="ABBRID0EBMAG">ssLibs</abbrev>) or readpool-2 (<abbrev xlink:title="double-stranded DNA libraries" id="ABBRID0EFMAG">dsLibs</abbrev>), an allowed mismatch value of 2, and sequence <ext-link ext-link-type="gen" xlink:href="KM216748" xlink:type="simple">KM216748</ext-link> (<italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="scripta">s.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="elegans">elegans</tp:taxon-name-part></tp:taxon-name></italic>) as a starting seed. For step 1 of the mapping procedure of the <abbrev xlink:title="double-stranded DNA libraries" id="ABBRID0E4MAG">dsLibs</abbrev>, readpool-2 was reduced to 30,000 randomly selected reads. The five nuclear loci of the 14 <abbrev xlink:title="single-stranded DNA libraries" id="ABBRID0EBNAG">ssLibs</abbrev> were also assembled with MITObim using individual mapping events, readpool-0, an allowed mismatch value of 2, and the above-mentioned sequences of <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="medemi">medemi</tp:taxon-name-part></tp:taxon-name></italic> as a starting seed. The nuclear assemblies of the four <abbrev xlink:title="double-stranded DNA libraries" id="ABBRID0EQNAG">dsLibs</abbrev> were carried out in a single mapping event per sample, using the Burrows-Wheeler Aligner (<xref ref-type="bibr" rid="B34">Li and Durbin 2009</xref>) with its Maximal Exact Match algorithm (BWA-MEM), applying a relaxed mismatch threshold of 0.001 (corresponding to approximately eight mismatches in 100 bp), readpool-1 including all non-merged quality-filtered reads due to the low number of available merged reads, and the concatenated nuclear sequences of <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="medemi">medemi</tp:taxon-name-part></tp:taxon-name></italic> as a mapping reference. All resulting scaffolds were visualized and checked for assembly artifacts in Tablet (<xref ref-type="bibr" rid="B44">Milne et al. 2013</xref>). Assembly artifacts were manually removed from the assembled contigs and all positions with a coverage below 3-fold masked as ambiguous (N), using the maskfasta subcommand of BEDTools 2.29.2 (<xref ref-type="bibr" rid="B51">Quinlan and Hall 2010</xref>). Sequence length distribution of mapped reads was calculated with a customized awk command and Microsoft Excel. The temporal authenticity of the mapped reads was tested with mapDamage 2.0 (<xref ref-type="bibr" rid="B27">Jónsson et al. 2013</xref>), which accounts for nucleotide misincorporations due to DNA degradation. An exemplary sample documentation for the oldest specimen processed in this study (SMF 22291, collected 1936) is provided in Figures S1–S6. The summarized mapping details are provided in Table S5.</p>
      <p><bold>Alignment preparations.</bold> The new Sanger-sequenced data were visually inspected for base-calling errors and then aligned with the <abbrev xlink:title="Next Generation Sequencing" id="ABBRID0E6OAG">NGS</abbrev> data and previously published sequences of 90 <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">Trachemys</tp:taxon-name-part></tp:taxon-name></italic> and related taxa (­Table S1). Eight individual files (12S, ND4L/ND4, cyt <italic>b</italic> plus ­tRNA-Thr, Cmos, ODC, R35, Rag1, Rag2) were created using BioEdit 7.0.5.2 (<xref ref-type="bibr" rid="B20">Hall 1999</xref>). <abbrev xlink:title="Next Generation Sequencing" id="ABBRID0EUPAG">NGS</abbrev> sequence data were added by extracting the appropriate genes from the mitochondrial and nuclear assemblies. The individual alignments were adjusted manually and cropped to their final lengths. Each protein-coding gene was screened for the presence of internal stop codons using MEGA X (­<xref ref-type="bibr" rid="B30">Kumar et al. 2018</xref>). For the three mitochondrial alignments, problematic sequence features were removed manually before the sequences were concatenated for analysis (4 bp of stop codons of coding genes as these do not code for any amino acid; 11 bp of gene overlap including adjacent codon positions to maintain an intact reading frame because these short regions cannot be identified with a single gene and may have evolved differently; 3 bp of intergenic spacer regions). The mtDNA alignment used for calculations was 3221 bp long and contained sequences from 133 turtles (12S: 398 bp; cyt <italic>b</italic>: 1137 bp; tRNA-Thr: 26 bp; ND4L: 289 bp; ND4: 1371 bp).</p>
      <p>The coding regions of the five nuclear loci were also checked for internal stop codons before being concatenated. After obtaining both alleles for each sample by phasing each sequence with DnaSP 6.12 (<xref ref-type="bibr" rid="B54">Rozas et al. 2017</xref>), the final alignment had a length of 3396 bp (Cmos: 563 bp; ODC: 620 bp; R35: 962 bp; Rag1: 614 bp; Rag2: 637 bp) and contained 212 phased sequences from 106 specimens.</p>
      <p><bold>Phylogenetic analyses.</bold> Phylogenetic analyses were performed for the mitochondrial and nuclear datasets inde­pendently, applying Maximum Likelihood (<abbrev xlink:title="Maximum Likelihood" id="ABBRID0EIQAG">ML</abbrev>) and Bayesian Inference (<abbrev xlink:title="Bayesian Inference" id="ABBRID0EMQAG">BI</abbrev>) approaches using RAxML 8.0.0 (<xref ref-type="bibr" rid="B62">Stamatakis 2014</xref>) and MrBayes 3.2.6 (<xref ref-type="bibr" rid="B53">Ronquist et al. 2012</xref>). The best evolutionary models and partitioning schemes (Tables S6–S9) were determined with PartitionFinder2 (<xref ref-type="bibr" rid="B31">Lanfear et al. 2016</xref>) applying the greedy search scheme and the Bayesian Information Criterion. For <abbrev xlink:title="Maximum Likelihood" id="ABBRID0EERAG">ML</abbrev>, 10 independent searches were carried out using the GTR + G substitution model, different starting conditions, and the rapid bootstrap option, following the recommendation of <xref ref-type="bibr" rid="B63">Stamatakis (2016</xref>: 59, 60) to avoid the GTR+I+G model. Subsequently, 1000 non-parametric thorough bootstrap replicates were calculated and the ­values plotted against the best tree. For <abbrev xlink:title="Bayesian Inference" id="ABBRID0EMRAG">BI</abbrev>, four parallel runs (each with eight chains) were performed with 5 million (mitochondrial dataset) and 10 million (nuclear dataset) generations (burn-in 0.25; print frequency 1000; sample frequency 1000). Calculation parameters were analyzed using Tracer 1.7.1 (<xref ref-type="bibr" rid="B52">Rambaut et al. 2018</xref>).</p>
      <p><bold>SplitsTree analysis.</bold> In addition, the phased and concatenated nuclear DNA dataset was used to build a phylogenetic network in the program SplitsTree4 v4.18.3 (<xref ref-type="bibr" rid="B2">Bryant and Huson 2023</xref>) based on uncorrected p distances and the NeighborNet algorithm. The appropriate alignment was reduced to 82 specimens (164 sequences), containing only those samples with all five nuclear loci present and a maximum of 5% missing data.</p>
      <p><bold>Mitochondrial molecular clock.</bold> To estimate the approximate time of mitochondrial capture in <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="nebulosa">nebulosa</tp:taxon-name-part></tp:taxon-name></italic> and <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="gaigeae">gaigeae</tp:taxon-name-part></tp:taxon-name></italic> (see below), we run exploratory calculations using the uncorrelated relaxed molecular clock implemented in BEAST 1.8.2 (<xref ref-type="bibr" rid="B5">Drummond and Rambaut 2007</xref>) and a partitioned dataset of concatenated mtDNA sequences. The alignment included only one representative for each taxon, except for <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="venusta">v.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="venusta">venusta</tp:taxon-name-part></tp:taxon-name></italic> for which two divergent sequences were included. The same settings and fossil calibrations as in <xref ref-type="bibr" rid="B14">Fritz et al. (2012)</xref> were employed using lognormal prior distributions for the most recent common ancestors. To achieve effective sample sizes (<abbrev xlink:title="effective sample sizes" id="ABBRID0ENTAG">ESS</abbrev>) for all parameters that exceeded 100, the analyses were run for 350 million generations.</p>
    </sec>
    <sec sec-type="Results" id="SECID0ERTAG">
      <title>Results</title>
      <sec sec-type="Mitochondrial phylogeny" id="SECID0EVTAG">
        <title>Mitochondrial phylogeny</title>
        <p>The two tree-building approaches delivered similar results (Figs <xref ref-type="fig" rid="F4">4</xref>, <xref ref-type="fig" rid="F5">5</xref>). In agreement with earlier studies (<xref ref-type="bibr" rid="B14">Fritz et al. 2012</xref>, <xref ref-type="bibr" rid="B13">2023</xref>; <xref ref-type="bibr" rid="B69">Vargas-Ramírez et al. 2017</xref>), the previously studied taxa correspond to five deeply divergent and well-supported clades within <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">Trachemys</tp:taxon-name-part></tp:taxon-name></italic>. These are, in Figure <xref ref-type="fig" rid="F5">5</xref> from top to bottom, one clade each for the two Mexican and Central American species (1) <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="venusta">venusta</tp:taxon-name-part></tp:taxon-name></italic>, a species having also two subspecies in northern South America (<italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="venusta">v.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="callirostris">callirostris</tp:taxon-name-part></tp:taxon-name></italic>, <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="venusta">v.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="chichiriviche">chichiriviche</tp:taxon-name-part></tp:taxon-name></italic>), and (2) <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="grayi">grayi</tp:taxon-name-part></tp:taxon-name></italic>, (3) a further clade comprising the South American species <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="dorbigni">dorbigni</tp:taxon-name-part></tp:taxon-name></italic> + <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="medemi">medemi</tp:taxon-name-part></tp:taxon-name></italic>, (4) another clade consisting of the North American species <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="scripta">scripta</tp:taxon-name-part></tp:taxon-name></italic> + <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="gaigeae">gaigeae</tp:taxon-name-part></tp:taxon-name></italic>, and (5) yet another clade containing all West Indian species (<italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="decorata">decorata</tp:taxon-name-part></tp:taxon-name></italic>, <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="decussata">decussata</tp:taxon-name-part></tp:taxon-name></italic>, <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="stejnegeri">stejnegeri</tp:taxon-name-part></tp:taxon-name></italic>, <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="terrapen">terrapen</tp:taxon-name-part></tp:taxon-name></italic>). However, there are two additional clades, one comprised of sequences of <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="yaquia">yaquia</tp:taxon-name-part></tp:taxon-name></italic> and <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="ornata">ornata</tp:taxon-name-part></tp:taxon-name></italic> and the other clade, of the two subspecies of <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="nebulosa">nebulosa</tp:taxon-name-part></tp:taxon-name></italic> (see below).</p>
        <fig id="F4" position="float" orientation="portrait">
          <object-id content-type="doi">10.3897/vz.74.e125958.figure4</object-id>
          <object-id content-type="arpha">A759C5DD-DEFB-58EE-A83F-DAD096277BFB</object-id>
          <label>Figure 4.</label>
          <caption>
            <p>Mitochondrial phylogeny of <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">Trachemys</tp:taxon-name-part></tp:taxon-name></italic> species and related taxa as inferred by RAxML 8.0.0, rooted with <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Deirochelys">Deirochelys</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="reticularia">reticularia</tp:taxon-name-part></tp:taxon-name></italic> and based on 3221 bp of mtDNA (12S, ND4L, ND4, cyt <italic>b</italic> plus adjacent tRNA-Thr, 133 specimens). Codes preceding taxon names are voucher or <abbrev xlink:title="European Nucleotide Archive" id="ABBRID0ED2AG">ENA</abbrev> accession numbers (see also Table S1). Numbers at nodes are bootstrap values. Note the placement of <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">Trachemys</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="nebulosa">nebulosa</tp:taxon-name-part></tp:taxon-name></italic> (red) outside <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">Trachemys</tp:taxon-name-part></tp:taxon-name></italic> as sister lineage of <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Malaclemys">Malaclemys</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="terrapin">terrapin</tp:taxon-name-part></tp:taxon-name></italic> and the well-supported monophyly of the remaining <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">Trachemys</tp:taxon-name-part></tp:taxon-name></italic> taxa. Inset picture: <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="nebulosa">n.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="hiltoni">hiltoni</tp:taxon-name-part></tp:taxon-name></italic> (photo: P. C. Rosen).</p>
          </caption>
          <graphic xlink:href="vertebrate-zoology-74-435-g004.jpg" position="float" orientation="portrait" xlink:type="simple" id="oo_1080971.jpg">
            <uri content-type="original_file">https://binary.pensoft.net/fig/1080971</uri>
          </graphic>
        </fig>
        <fig id="F5" position="float" orientation="portrait">
          <object-id content-type="doi">10.3897/vz.74.e125958.figure5</object-id>
          <object-id content-type="arpha">BFCF37B7-9D5F-5C98-B108-95D4264B1644</object-id>
          <label>Figure 5.</label>
          <caption>
            <p>Mitochondrial phylogeny of <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">Trachemys</tp:taxon-name-part></tp:taxon-name></italic> species and related taxa as inferred by MrBayes 3.2.6, rooted with <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Deirochelys">Deirochelys</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="reticularia">reticularia</tp:taxon-name-part></tp:taxon-name></italic> and based on 3221 bp of mtDNA (12S, ND4L, ND4, cyt <italic>b</italic> plus adjacent tRNA-Thr, 133 specimens). Clades collapsed to cartoons. Codes preceding taxon names are voucher or <abbrev xlink:title="European Nucleotide Archive" id="ABBRID0E64AG">ENA</abbrev> accession numbers (see also Table S1). Numbers at nodes are posterior probabilities. Note the placement of <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">Trachemys</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="nebulosa">nebulosa</tp:taxon-name-part></tp:taxon-name></italic> (red) outside <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">Trachemys</tp:taxon-name-part></tp:taxon-name></italic> as sister lineage of <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Malaclemys">Malaclemys</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="terrapin">terrapin</tp:taxon-name-part></tp:taxon-name></italic> and the well-supported monophyly of the remaining <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">Trachemys</tp:taxon-name-part></tp:taxon-name></italic> taxa. Grey rectangle top left shows details for right grey rectangle. Inset pictures, top and bottom: <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="venusta">v.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="venusta">venusta</tp:taxon-name-part></tp:taxon-name></italic> (photo: U. Fritz) and <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Malaclemys">M.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="terrapin">terrapin</tp:taxon-name-part></tp:taxon-name></italic> (photo: A. T. Coleman).</p>
          </caption>
          <graphic xlink:href="vertebrate-zoology-74-435-g005.jpg" position="float" orientation="portrait" xlink:type="simple" id="oo_1080972.jpg">
            <uri content-type="original_file">https://binary.pensoft.net/fig/1080972</uri>
          </graphic>
        </fig>
        <p>Within <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="grayi">grayi</tp:taxon-name-part></tp:taxon-name></italic>, the three currently recognized subspecies <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="grayi">g.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="grayi">grayi</tp:taxon-name-part></tp:taxon-name></italic>, <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="grayi">g.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="emolli">emolli</tp:taxon-name-part></tp:taxon-name></italic> and <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="grayi">g.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="panamensis">panamensis</tp:taxon-name-part></tp:taxon-name></italic> and within <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="dorbigni">dorbigni</tp:taxon-name-part></tp:taxon-name></italic>, the two subspecies <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="dorbigni">d.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="dorbigni">dorbigni</tp:taxon-name-part></tp:taxon-name></italic> and <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="dorbigni">d.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="adiutrix">adiutrix</tp:taxon-name-part></tp:taxon-name></italic> represent reciprocally monophyletic clades. However, this is not the case with respect to the subspecies of <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="venusta">venusta</tp:taxon-name-part></tp:taxon-name></italic>. Also, the placement of some previously unstudied taxa was unexpected and two taxa are not distinct. Our only representative of <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="venusta">v.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="iversoni">iversoni</tp:taxon-name-part></tp:taxon-name></italic> clusters within <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="venusta">venusta</tp:taxon-name-part></tp:taxon-name></italic> and shares with some <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="venusta">v.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="venusta">venusta</tp:taxon-name-part></tp:taxon-name></italic> and <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="venusta">v.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="uhrigi">uhrigi</tp:taxon-name-part></tp:taxon-name></italic> the same mitochondrial lineage. <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">Trachemys</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="taylori">taylori</tp:taxon-name-part></tp:taxon-name></italic> clusters within <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="venusta">venusta</tp:taxon-name-part></tp:taxon-name></italic> as well. In contrast, sequences of <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="yaquia">yaquia</tp:taxon-name-part></tp:taxon-name></italic> and <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="ornata">ornata</tp:taxon-name-part></tp:taxon-name></italic> are distinct and reciprocally monophyletic. They represent together a well-supported and deeply divergent clade which is, with high support, sister to <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="venusta">venusta</tp:taxon-name-part></tp:taxon-name></italic>.</p>
        <p>The clade (<italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">Trachemys</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="yaquia">yaquia</tp:taxon-name-part></tp:taxon-name></italic> + <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="ornata">ornata</tp:taxon-name-part></tp:taxon-name></italic>) + <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="venusta">venusta</tp:taxon-name-part></tp:taxon-name></italic> is with weak support sister to <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="grayi">grayi</tp:taxon-name-part></tp:taxon-name></italic>. These four mainly Mexican and Central American species represent together a well-supported clade that also contains the South American taxa <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="dorbigni">dorbigni</tp:taxon-name-part></tp:taxon-name></italic> + <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="medemi">medemi</tp:taxon-name-part></tp:taxon-name></italic>. This more inclusive clade comprised of Mexican, Central and South American taxa occurs in an unresolved but well-supported clade that also contains the two clades of North American and West Indian <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">Trachemys</tp:taxon-name-part></tp:taxon-name></italic>. Notably, <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="nebulosa">nebulosa</tp:taxon-name-part></tp:taxon-name></italic> is excluded from this <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">Trachemys</tp:taxon-name-part></tp:taxon-name></italic> clade and appears unexpectedly with weak support as sister taxon of the diamondback <tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Malaclemys"/><tp:taxon-name-part taxon-name-part-type="species" reg="terrapin">terrapin</tp:taxon-name-part></tp:taxon-name><italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Malaclemys">Malaclemys</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="terrapin">terrapin</tp:taxon-name-part></tp:taxon-name></italic>. This latter <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Malaclemys">Malaclemys</tp:taxon-name-part></tp:taxon-name></italic> + <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="nebulosa">nebulosa</tp:taxon-name-part></tp:taxon-name></italic> clade and another clade corresponding to <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Graptemys">Graptemys</tp:taxon-name-part></tp:taxon-name></italic> occur together with the monophyletic <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">Trachemys</tp:taxon-name-part></tp:taxon-name></italic> exclusive <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="nebulosa">nebulosa</tp:taxon-name-part></tp:taxon-name></italic> in an unresolved polytomy in another well-supported clade; the sister group of this clade is <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Chrysemys">Chrysemys</tp:taxon-name-part></tp:taxon-name></italic> + <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Pseudemys">Pseudemys</tp:taxon-name-part></tp:taxon-name></italic>.</p>
        <p>Our only sequence of the nominotypical subspecies of <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="nebulosa">nebulosa</tp:taxon-name-part></tp:taxon-name></italic> from the Baja California Peninsula is not clearly differentiated from seven <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="nebulosa">n.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="hiltoni">hiltoni</tp:taxon-name-part></tp:taxon-name></italic> from Sinaloa.</p>
        <p>Mitochondrial divergence within <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">Trachemys</tp:taxon-name-part></tp:taxon-name></italic> commenced 6.1 million years ago (mya; Fig. S7). The mitochondrial divergence between <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="gaigeae">gaigeae</tp:taxon-name-part></tp:taxon-name></italic> and <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="scripta">scripta</tp:taxon-name-part></tp:taxon-name></italic> was dated to 2.2 mya; and that between <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="nebulosa">nebulosa</tp:taxon-name-part></tp:taxon-name></italic> and <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Malaclemys">M.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="terrapin">terrapin</tp:taxon-name-part></tp:taxon-name></italic>, to 7.0 mya. All obtained estimates were younger than those presented in <xref ref-type="bibr" rid="B14">Fritz et al. (2012)</xref> for a similar taxon sampling (Table S10). However, the calculations in <xref ref-type="bibr" rid="B14">Fritz et al. (2012)</xref> included in addition to the same mitochondrial genes also the five nuclear loci of the present study.</p>
      </sec>
      <sec sec-type="Nuclear phylogeny" id="SECID0ERPBG">
        <title>Nuclear phylogeny</title>
        <p>Using our five nuclear loci Cmos, ODC, R35, Rag1, and Rag2, the relationships of the studied taxa are only incompletely resolved. However, several firm conclusions can be deduced.</p>
        <p>Our SplitsTree analysis using a phased dataset with a maximum of 5% missing sequence data (Fig. <xref ref-type="fig" rid="F6">6</xref>) clearly places <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="nebulosa">nebulosa</tp:taxon-name-part></tp:taxon-name></italic> into the same cluster as all other Mexican and Central American taxa; <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Graptemys">Graptemys</tp:taxon-name-part></tp:taxon-name></italic> and <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Malaclemys">Malaclemys</tp:taxon-name-part></tp:taxon-name></italic> are closely related and highly divergent. There is no evidence for a close relationship of <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Malaclemys">Malaclemys</tp:taxon-name-part></tp:taxon-name></italic> and <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="nebulosa">nebulosa</tp:taxon-name-part></tp:taxon-name></italic>. <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">Trachemys</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="gaigeae">gaigeae</tp:taxon-name-part></tp:taxon-name></italic>, the Antillean taxa <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="decussata">decussata</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="angusta">angusta</tp:taxon-name-part></tp:taxon-name></italic> and <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="stejnegeri">stejnegeri</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="vicina">vicina</tp:taxon-name-part></tp:taxon-name></italic>, <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Pseudemys">Pseudemys</tp:taxon-name-part></tp:taxon-name></italic> and <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Chrysemys">Chrysemys</tp:taxon-name-part></tp:taxon-name></italic> represent further deeply divergent branches or clusters. Within the cluster comprised of Central and South American <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">Trachemys</tp:taxon-name-part></tp:taxon-name></italic>, most species were returned as distinct subclusters or distinct branches. Conversely, most subspecies could not be resolved, even though <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="venusta">v.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="venusta">venusta</tp:taxon-name-part></tp:taxon-name></italic>, <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="venusta">v.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="cataspila">cataspila</tp:taxon-name-part></tp:taxon-name></italic> and <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="venusta">v.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="uhrigi">uhrigi</tp:taxon-name-part></tp:taxon-name></italic> appear as largely distinct subclusters. However, their distinctness is not supported in the phylogenetic analyses (Figs S8, S9, see below). The two South American subspecies <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="venusta">v.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="callirostris">callirostris</tp:taxon-name-part></tp:taxon-name></italic> and <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="venusta">v.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="chichiriviche">chichiriviche</tp:taxon-name-part></tp:taxon-name></italic> represent together another weakly distinct subcluster in the SplitsTree analy­sis (Fig. <xref ref-type="fig" rid="F6">6</xref>), with an intermediate position between the subcluster of <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="venusta">v.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="uhrigi">uhrigi</tp:taxon-name-part></tp:taxon-name></italic> and the South American species <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="medemi">medemi</tp:taxon-name-part></tp:taxon-name></italic> and <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="dorbigni">dorbigni</tp:taxon-name-part></tp:taxon-name></italic>. Though, in the phylogenetic analyses, the placement of <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="venusta">v.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="callirostris">callirostris</tp:taxon-name-part></tp:taxon-name></italic> and <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="venusta">v.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="chichiriviche">chichiriviche</tp:taxon-name-part></tp:taxon-name></italic> is unresolved and without statistical support (Figs S8, S9). The single specimen of <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="nebulosa">n.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="nebulosa">nebulosa</tp:taxon-name-part></tp:taxon-name></italic> was included in the same SplitsTree subcluster as seven <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="nebulosa">n.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="hiltoni">hiltoni</tp:taxon-name-part></tp:taxon-name></italic> (Fig. <xref ref-type="fig" rid="F6">6</xref>). With regard to species allocation, two <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="grayi">grayi</tp:taxon-name-part></tp:taxon-name></italic> samples were misplaced. One <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="grayi">g.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="panamensis">panamensis</tp:taxon-name-part></tp:taxon-name></italic> (MTD D 42599, allele numbers 77 and 78 in Fig. <xref ref-type="fig" rid="F6">6</xref>) represents a distinct cluster and one <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="grayi">g.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="emolli">emolli</tp:taxon-name-part></tp:taxon-name></italic> (SMF 71417, numbers 27 and 28 in Fig. <xref ref-type="fig" rid="F6">6</xref>) was placed among <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="venusta">v.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="uhrigi">uhrigi</tp:taxon-name-part></tp:taxon-name></italic>. The alleles of one <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="venusta">v.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="uhrigi">uhrigi</tp:taxon-name-part></tp:taxon-name></italic> clustered among <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="venusta">v.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="cataspila">cataspila</tp:taxon-name-part></tp:taxon-name></italic> (FMNH 283808, numbers 125 nd 126 in Fig. <xref ref-type="fig" rid="F6">6</xref>).</p>
        <fig id="F6" position="float" orientation="portrait">
          <object-id content-type="doi">10.3897/vz.74.e125958.figure6</object-id>
          <object-id content-type="arpha">E9B3CE36-E7E5-5BF4-8E34-D30CCB29B0EB</object-id>
          <label>Figure 6.</label>
          <caption>
            <p>SplitsTree for phased and concatenated nuclear DNA sequences of <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">Trachemys</tp:taxon-name-part></tp:taxon-name></italic> species and related taxa (Cmos, ODC, R35, Rag1, Rag2, 3396 bp, 82 specimens; sequences with less than 5% missing data). Numbers at branch tips refer to alleles, see Table S1 for explanation. Note the similarity of <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Graptemys">Graptemys</tp:taxon-name-part></tp:taxon-name></italic> and <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Malaclemys">Malaclemys</tp:taxon-name-part></tp:taxon-name></italic> and the placement of <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">Trachemys</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="nebulosa">nebulosa</tp:taxon-name-part></tp:taxon-name></italic> (red) next to the geographically neighboring <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">Trachemys</tp:taxon-name-part></tp:taxon-name></italic> taxa (<italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="gaigeae">gaigeae</tp:taxon-name-part></tp:taxon-name></italic>, <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="ornata">ornata</tp:taxon-name-part></tp:taxon-name></italic>, <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="yaquia">yaquia</tp:taxon-name-part></tp:taxon-name></italic>). Conflicting samples highlighted with solid blue circles. Inset picture: <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="ornata">ornata</tp:taxon-name-part></tp:taxon-name></italic> (photo: P. C. Rosen).</p>
          </caption>
          <graphic xlink:href="vertebrate-zoology-74-435-g006.jpg" position="float" orientation="portrait" xlink:type="simple" id="oo_1080973.jpg">
            <uri content-type="original_file">https://binary.pensoft.net/fig/1080973</uri>
          </graphic>
        </fig>
        <p>RAxML and MrBayes analyses using all phased sequences (Figs S8, S9), i.e., also those with more than 5% missing data, confirm the general patterns. Notably, the two algorithms place <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="nebulosa">nebulosa</tp:taxon-name-part></tp:taxon-name></italic> into a well-supported clade together with the other Mexican, Central and South American <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">Trachemys</tp:taxon-name-part></tp:taxon-name></italic> species, i.e., <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="dorbigni">dorbigni</tp:taxon-name-part></tp:taxon-name></italic>, <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="grayi">grayi</tp:taxon-name-part></tp:taxon-name></italic>, <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="medemi">medemi</tp:taxon-name-part></tp:taxon-name></italic>, <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="ornata">ornata</tp:taxon-name-part></tp:taxon-name></italic>, <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="venusta">venusta</tp:taxon-name-part></tp:taxon-name></italic> (including <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="taylori">taylori</tp:taxon-name-part></tp:taxon-name></italic>), and <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="yaquia">yaquia</tp:taxon-name-part></tp:taxon-name></italic>. Furthermore, <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Graptemys">Graptemys</tp:taxon-name-part></tp:taxon-name></italic> and <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Malaclemys">Malaclemys</tp:taxon-name-part></tp:taxon-name></italic> are deeply divergent and well-supported sister taxa. The two museum specimens of <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="taylori">taylori</tp:taxon-name-part></tp:taxon-name></italic> for which nuclear DNA sequences could be obtained, are placed within <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="venusta">venusta</tp:taxon-name-part></tp:taxon-name></italic> and not distinct from sequences from <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="venusta">v.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="cataspila">cataspila</tp:taxon-name-part></tp:taxon-name></italic>. These two specimens were not included in the SplitsTree calculation due to missing data. The sequences of the two subspecies of <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="nebulosa">nebulosa</tp:taxon-name-part></tp:taxon-name></italic> were slightly distinct in the trees, in contrast to the SplitsTree analysis. The unexpected position of the two above-mentioned <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="grayi">grayi</tp:taxon-name-part></tp:taxon-name></italic> samples (MTD D 42599, SMF 71417) and the <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="venusta">v.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="uhrigi">uhrigi</tp:taxon-name-part></tp:taxon-name></italic> (FMNH 283808) is also reflected in the phylogenetic trees.</p>
        <p>Even though the trees are generally not well resolved, the following additional observations are noteworthy (i) the South American species <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="dorbigni">dorbigni</tp:taxon-name-part></tp:taxon-name></italic> (with the subspecies <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="dorbigni">d.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="dorbigni">dorbigni</tp:taxon-name-part></tp:taxon-name></italic> and <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="dorbigni">d.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="adiutrix">adiutrix</tp:taxon-name-part></tp:taxon-name></italic>) and <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="medemi">medemi</tp:taxon-name-part></tp:taxon-name></italic> are well-supported sister taxa within the Mexican, Central and South American clade; (ii) sequences of the two <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="nebulosa">nebulosa</tp:taxon-name-part></tp:taxon-name></italic> subspecies are another well-supported subclade within the Mexican, Central and South American clade and the only representative of <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="nebulosa">n.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="nebulosa">nebulosa</tp:taxon-name-part></tp:taxon-name></italic> is distinct from <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="nebulosa">n.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="hiltoni">hiltoni</tp:taxon-name-part></tp:taxon-name></italic>; (iii) <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="grayi">grayi</tp:taxon-name-part></tp:taxon-name></italic>, <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="taylori">taylori</tp:taxon-name-part></tp:taxon-name></italic> and <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="venusta">venusta</tp:taxon-name-part></tp:taxon-name></italic> are not reciprocally monophyletic; (iv) sequences of <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="taylori">taylori</tp:taxon-name-part></tp:taxon-name></italic> cluster with sequences of <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="venusta">v.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="cataspila">cataspila</tp:taxon-name-part></tp:taxon-name></italic>; (v) several sequences of <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="venusta">v.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="uhrigi">uhrigi</tp:taxon-name-part></tp:taxon-name></italic> represent a weakly supported subclade that corresponds to the subcluster for <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="venusta">v.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="uhrigi">uhrigi</tp:taxon-name-part></tp:taxon-name></italic> in the SplitsTree; this subclade includes 11 (MrBayes) or 13 (RAxML) sequences of <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="venusta">v.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="uhrigi">uhrigi</tp:taxon-name-part></tp:taxon-name></italic> from Guatemala, Honduras, Nicaragua and the two alleles of one <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="grayi">g.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="emolli">emolli</tp:taxon-name-part></tp:taxon-name></italic> (SMF 71417) from Costa Rica, (vi) the remaining 13 or 11 of the 24 sequences of <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="venusta">v.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="uhrigi">uhrigi</tp:taxon-name-part></tp:taxon-name></italic> (which were mostly not used in the SplitsTree because of missing data) appear in remote positions across the Mexican, Central and South American clade, either in unresolved polytomies or they cluster with weak support with alleles of <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="venusta">v.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="venusta">venusta</tp:taxon-name-part></tp:taxon-name></italic>, <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="venusta">v.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="cataspila">cataspila</tp:taxon-name-part></tp:taxon-name></italic>, <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="venusta">v.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="chichiriviche">chichiriviche</tp:taxon-name-part></tp:taxon-name></italic>, or <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="grayi">g.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="panamensis">panamensis</tp:taxon-name-part></tp:taxon-name></italic>; (vii) <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="ornata">ornata</tp:taxon-name-part></tp:taxon-name></italic> and <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="yaquia">yaquia</tp:taxon-name-part></tp:taxon-name></italic> constitute distinct subclades within the Mexican, Central and South American clade; (viii) the only representative of <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="gaigeae">gaigeae</tp:taxon-name-part></tp:taxon-name></italic> is deeply divergent from the Mexican, Central and South American clade and clusters within an unresolved polytomy that also contains the other North American taxa, i.e., <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="scripta">scripta</tp:taxon-name-part></tp:taxon-name></italic>, a well-supported clade comprised of <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Malaclemys">Malaclemys</tp:taxon-name-part></tp:taxon-name></italic> with <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Graptemys">Graptemys</tp:taxon-name-part></tp:taxon-name></italic> as its the well-supported sister, <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Chrysemys">Chrysemys</tp:taxon-name-part></tp:taxon-name></italic> and <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Pseudemys">Pseudemys</tp:taxon-name-part></tp:taxon-name></italic>, and the West Indian <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">Trachemys</tp:taxon-name-part></tp:taxon-name></italic> taxa; (ix) within this polytomy, the West Indian species represent a well-supported monophylum; (x) some sequences of the North American <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="scripta">scripta</tp:taxon-name-part></tp:taxon-name></italic> are sister to the West Indian taxa, while others cluster with weak support with <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Pseudemys">Pseudemys</tp:taxon-name-part></tp:taxon-name></italic>.</p>
      </sec>
      <sec sec-type="A long discussion, with external mor­phology and courtship behavior not making things easier" id="SECID0EWRAI">
        <title>A long discussion, with external mor­phology and courtship behavior not making things easier</title>
        <p>The results of our analyses based on mitochondrial and nuclear DNA are not in complete agreement. When the mitochondrial and nuclear topologies are compared (Figs <xref ref-type="fig" rid="F4">4</xref>, <xref ref-type="fig" rid="F5">5</xref>, <xref ref-type="fig" rid="F6">6</xref>, S8, S9), the most notable difference is the conflicting placement of <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">Trachemys</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="nebulosa">nebulosa</tp:taxon-name-part></tp:taxon-name></italic>. In the mitochondrial phylogenies (Figs <xref ref-type="fig" rid="F4">4</xref>, <xref ref-type="fig" rid="F5">5</xref>), <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="nebulosa">nebulosa</tp:taxon-name-part></tp:taxon-name></italic> is with weak support sister to <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Malaclemys">Malaclemys</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="terrapin">terrapin</tp:taxon-name-part></tp:taxon-name></italic>, a highly distinctive species confined to coastal zones with brackish water. It is distributed farther east along a narrow strip following the southern and eastern US coasts from Texas to Cape Cod and represents a monotypic genus (<xref ref-type="bibr" rid="B7">Ernst and ­Barbour 1989</xref>; <xref ref-type="bibr" rid="B57">Seidel and Ernst 2017</xref>; TTWG 2021). In sharp contrast, our analyses based on nuclear DNA (Figs <xref ref-type="fig" rid="F6">6</xref>, S8, S9) reveal that <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="nebulosa">nebulosa</tp:taxon-name-part></tp:taxon-name></italic> belongs to the Mexican and Central American <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">Trachemys</tp:taxon-name-part></tp:taxon-name></italic> clade, in agreement with its traditional taxonomic assignment (e.g., <xref ref-type="bibr" rid="B45">Moll and Legler 1971</xref>; <xref ref-type="bibr" rid="B7">Ernst and Barbour 1989</xref>; <xref ref-type="bibr" rid="B32">Legler 1990</xref>; <xref ref-type="bibr" rid="B57">Seidel and Ernst 2017</xref>; TTWG 2021). According to the nuclear data, <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Malaclemys">Malaclemys</tp:taxon-name-part></tp:taxon-name></italic> is phylogenetically deeply divergent from <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">Trachemys</tp:taxon-name-part></tp:taxon-name></italic> and sister to the genus <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Graptemys">Graptemys</tp:taxon-name-part></tp:taxon-name></italic>, the morphologically distinctive map and sawback turtles from southeastern North America. This topology is in line with previous investigations (see the reviews in <xref ref-type="bibr" rid="B57">Seidel and Ernst 2017</xref> and TTGW 2021) including a study based on 15 nuclear genes (<xref ref-type="bibr" rid="B64">Thomson et al. 2021</xref>). However, the sister group relationship of <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="nebulosa">nebulosa</tp:taxon-name-part></tp:taxon-name></italic> + (<italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="dorbigni">dorbigni</tp:taxon-name-part></tp:taxon-name></italic> + <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="taylori">taylori</tp:taxon-name-part></tp:taxon-name></italic>) shown in the tree in <xref ref-type="bibr" rid="B64">Thomson et al. (2021)</xref> is questionable because samples misidentified on the species level seem to have been used for <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">Trachemys</tp:taxon-name-part></tp:taxon-name></italic> (<xref ref-type="bibr" rid="B13">Fritz et al. 2023</xref>). Further insecurity arises from the conflicting placement of <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="nebulosa">nebulosa</tp:taxon-name-part></tp:taxon-name></italic> in the tree presented in the supplementary information of <xref ref-type="bibr" rid="B64">Thomson et al. (2021)</xref>, where <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="nebulosa">nebulosa</tp:taxon-name-part></tp:taxon-name></italic> is sister to a clade comprised of all other Mexican, Central and South American <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">Trachemys</tp:taxon-name-part></tp:taxon-name></italic> taxa.</p>
        <p>Already the results of the pioneering study by <xref ref-type="bibr" rid="B71">Wiens et al. (2010)</xref> on the relationships of emydid turtles resembled our mitochondrial topologies in that a single sample of <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="nebulosa">nebulosa</tp:taxon-name-part></tp:taxon-name></italic> was with weak support sister to <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Malaclemys">Malaclemys</tp:taxon-name-part></tp:taxon-name></italic> in their tree based on mitochondrial cyt <italic>b</italic> and ND4 sequences, while it was the well-supported sister taxon of a single sample of <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="venusta">venusta</tp:taxon-name-part></tp:taxon-name></italic> in an analysis using six nuclear loci. <xref ref-type="bibr" rid="B57">Seidel and Ernst (2017)</xref> suggested that the mitochondrial results of <xref ref-type="bibr" rid="B71">Wiens et al. (2010)</xref> were erroneous, which seemed reasonable in the light of the phylogeny presented by <xref ref-type="bibr" rid="B47">Parham et al. (2015)</xref>. The latter authors included in their analysis of Central American and Mexican <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">Trachemys</tp:taxon-name-part></tp:taxon-name></italic> both <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="nebulosa">n.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="nebulosa">nebulosa</tp:taxon-name-part></tp:taxon-name></italic> and <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="nebulosa">n.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="hiltoni">hiltoni</tp:taxon-name-part></tp:taxon-name></italic>, which were sister taxa and occurred on a long branch within a monophyletic <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">Trachemys</tp:taxon-name-part></tp:taxon-name></italic>. <xref ref-type="bibr" rid="B47">Parham et al. (2015)</xref> used a combined dataset of mitochondrial (ND4) and nuclear (R35) DNA sequences. Therefore, the placement of the two <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="nebulosa">nebulosa</tp:taxon-name-part></tp:taxon-name></italic> subspecies was due to the signal of the nuclear locus. A comparison of the mtDNA sequences from <xref ref-type="bibr" rid="B71">Wiens et al. (2010)</xref> and <xref ref-type="bibr" rid="B47">Parham et al. (2015)</xref> with ours shows a complete match.</p>
        <p>Mitochondrial phylogenies of <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">Trachemys</tp:taxon-name-part></tp:taxon-name></italic> and related emydids can be easily confounded by the unintended inclusion of numts (non-coding nuclear mitochondrial DNA insertions) obtained with standard PCR primers (see <xref ref-type="bibr" rid="B14">Fritz et al. 2012</xref>). However, this is unlikely for <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="nebulosa">nebulosa</tp:taxon-name-part></tp:taxon-name></italic>. We used for all of our Sanger-sequenced samples the approach described in <xref ref-type="bibr" rid="B14">Fritz et al. (2012)</xref> to minimize the risk of amplifying numts. This approach involves long-range PCR and tailored primers. Thus, we are confident that our mitochondrial DNA sequences are authentic. However, how can the conflicting evidence for nuclear and mitochondrial DNA be explained?</p>
        <p>Mitochondrial introgression and mitochondrial capture are known to have occurred in multiple turtle clades and sometimes across deeply divergent taxa (<tp:taxon-name><tp:taxon-name-part taxon-name-part-type="family">Chelidae</tp:taxon-name-part></tp:taxon-name>: <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Chelodina">Chelodina</tp:taxon-name-part></tp:taxon-name></italic>, <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Emydura">Emydura</tp:taxon-name-part></tp:taxon-name></italic>, <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Myuchelys">Myuchelys</tp:taxon-name-part></tp:taxon-name></italic> – <xref ref-type="bibr" rid="B21">Hodges 2015</xref>; <xref ref-type="bibr" rid="B29">Kehlmaier et al. 2019</xref>, <xref ref-type="bibr" rid="B28">2024</xref>; <tp:taxon-name><tp:taxon-name-part taxon-name-part-type="family">Emydidae</tp:taxon-name-part></tp:taxon-name>: <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Actinemys">Actinemys</tp:taxon-name-part></tp:taxon-name></italic>, <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Graptemys">Graptemys</tp:taxon-name-part></tp:taxon-name></italic> – <xref ref-type="bibr" rid="B60">Spinks and Shaffer 2009</xref>; <xref ref-type="bibr" rid="B49">Praschag et al. 2017</xref>; <tp:taxon-name><tp:taxon-name-part taxon-name-part-type="family">Geoemydidae</tp:taxon-name-part></tp:taxon-name>: <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Cuora">Cuora</tp:taxon-name-part></tp:taxon-name></italic>, <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Cyclemys">Cyclemys</tp:taxon-name-part></tp:taxon-name></italic>, <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Malayemys">Malayemys</tp:taxon-name-part></tp:taxon-name></italic>, <italic>Rhinoclem­mys</italic> – <xref ref-type="bibr" rid="B59">Spinks and Shaffer 2007</xref>; <xref ref-type="bibr" rid="B12">Fritz et al. 2008</xref>; <xref ref-type="bibr" rid="B68">Vargas-Ramírez et al. 2013</xref>; <xref ref-type="bibr" rid="B25">Ihlow et al. 2016</xref>; <xref ref-type="bibr" rid="B66">Vamberger et al. 2017</xref>; <tp:taxon-name><tp:taxon-name-part taxon-name-part-type="family">Kinosternidae</tp:taxon-name-part></tp:taxon-name>: <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Kinosternon">Kinosternon</tp:taxon-name-part></tp:taxon-name></italic> – <xref ref-type="bibr" rid="B24">Hurtado-Gómez et al. 2024</xref>; <tp:taxon-name><tp:taxon-name-part taxon-name-part-type="family">Trionychidae</tp:taxon-name-part></tp:taxon-name>: <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Pelodiscus">Pelodiscus</tp:taxon-name-part></tp:taxon-name></italic> – <xref ref-type="bibr" rid="B17">Gong et al. 2018</xref>). <xref ref-type="bibr" rid="B13">Fritz et al. (2023)</xref> also considered mitochondrial capture for <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="gaigeae">gaigeae</tp:taxon-name-part></tp:taxon-name></italic>, whose mitogenome is the sister lineage of North American <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="scripta">scripta</tp:taxon-name-part></tp:taxon-name></italic>, even though <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="gaigeae">gaigeae</tp:taxon-name-part></tp:taxon-name></italic> is highly distinct according to nuclear information (see also our Figs <xref ref-type="fig" rid="F6">6</xref>, S8, S9) and resembles Mexican, Central and South American <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">Trachemys</tp:taxon-name-part></tp:taxon-name></italic> taxa in morphology, sexual dimorphism and the head bobbing behavior during courtship (<xref ref-type="bibr" rid="B33">Legler and Vogt 2013</xref>).</p>
        <p>This situation suggests that the deeply divergent mitochondrial lineage in <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="nebulosa">nebulosa</tp:taxon-name-part></tp:taxon-name></italic> represents another case of mitochondrial capture, either from the ancestor of the extant <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Malaclemys">Malaclemys</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="terrapin">terrapin</tp:taxon-name-part></tp:taxon-name></italic> or its extinct sister taxon. According to our exploratory molecular clock calculations, the mitochondrial lineages of <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Malaclemys">M.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="terrapin">terrapin</tp:taxon-name-part></tp:taxon-name></italic> and <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="nebulosa">nebulosa</tp:taxon-name-part></tp:taxon-name></italic> diverged 7.0 mya (95% HPD: 5.2–9.6 mya; Fig. S7 and Table S10), and this estimate might reflect the approximate time of mitochondrial capture. It is remarkable that this estimate predates that for the divergence of the mitochondrial lineages within <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">Trachemys</tp:taxon-name-part></tp:taxon-name></italic>, even though the 95% HPD intervals widely overlap (5.2–9.6 mya and 4.9–7.7 mya; Table S10). However, there are several caveats. In particular, the inferred date could correspond to the divergence of the ancestor of <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Malaclemys">M.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="terrapin">terrapin</tp:taxon-name-part></tp:taxon-name></italic> and its extinct sister taxon, and not to the date of the mitochondrial capture, i.e., <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="nebulosa">nebulosa</tp:taxon-name-part></tp:taxon-name></italic> could have captured the mitogenome later. Furthermore, the calibration points used may be misleading because the divergence history of mitogenomes is not necessarily congruent with the diversification of the ‘host’ organisms. Mitochondrial genes behave like a single locus, and a molecular clock should be ideally applied to a species tree or a multilocus dataset, not a single locus. Also, the mitochondrial sister group relationship of <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="nebulosa">nebulosa</tp:taxon-name-part></tp:taxon-name></italic> and <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Malaclemys">M.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="terrapin">terrapin</tp:taxon-name-part></tp:taxon-name></italic> is only weakly supported and the foreign mitogenome of <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="nebulosa">nebulosa</tp:taxon-name-part></tp:taxon-name></italic> could originate from another extinct emydid lineage. In any case, the divergence time estimate and the deep divergence of the mtDNA of <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="nebulosa">nebulosa</tp:taxon-name-part></tp:taxon-name></italic> suggest that the mitochondrial capture occurred very early during the diversification of <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">Trachemys</tp:taxon-name-part></tp:taxon-name></italic>, perhaps when the diversification of the genus began. In contrast, <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="gaigeae">gaigeae</tp:taxon-name-part></tp:taxon-name></italic> captured its mitogenome from the ancestor of <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="scripta">scripta</tp:taxon-name-part></tp:taxon-name></italic> much later, although our estimate of 2.2 mya (Table S10) should be treated with the same reservations as for <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="nebulosa">nebulosa</tp:taxon-name-part></tp:taxon-name></italic>.</p>
        <p>Our nuclear dataset of five loci obviously does not completely resolve the phylogeny of <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">Trachemys</tp:taxon-name-part></tp:taxon-name></italic>. However, the placement of <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="nebulosa">nebulosa</tp:taxon-name-part></tp:taxon-name></italic> is consistent in Splits­Tree, Bayesian and Maximum Likelihood analyses (Figs <xref ref-type="fig" rid="F6">6</xref>, S8, S9) and well supported. In addition, and in agreement with the calculations presented in <xref ref-type="bibr" rid="B13">Fritz et al. (2023)</xref>, the analyses of our nuclear data allow further insights. Mexican, Central and South American <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">Trachemys</tp:taxon-name-part></tp:taxon-name></italic> taxa appear to be closely related, while <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="scripta">scripta</tp:taxon-name-part></tp:taxon-name></italic>, the West Indian taxa and <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="gaigeae">gaigeae</tp:taxon-name-part></tp:taxon-name></italic> are distinct. The placement of some taxa and sequences in our SplitsTree analysis makes geographic sense, suggestive of past or current gene flow. This is true for the clusters of the South American taxa <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="dorbigni">d.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="dorbigni">dorbigni</tp:taxon-name-part></tp:taxon-name></italic>, <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="dorbigni">d.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="adiutrix">adiutrix</tp:taxon-name-part></tp:taxon-name></italic> and <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="medemi">medemi</tp:taxon-name-part></tp:taxon-name></italic> which are neighbors of the geographically close South American subspecies of <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="venusta">venusta</tp:taxon-name-part></tp:taxon-name></italic> (<italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="venusta">v.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="callirostris">callirostris</tp:taxon-name-part></tp:taxon-name></italic>, <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="venusta">v.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="chichiriviche">chichiriviche</tp:taxon-name-part></tp:taxon-name></italic>; Fig. <xref ref-type="fig" rid="F6">6</xref>). Furthermore, five individuals of the southern Central American subspecies <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="venusta">v.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="uhrigi">uhrigi</tp:taxon-name-part></tp:taxon-name></italic> are neighbor to the South American taxa. Also, the geographically close <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="ornata">ornata</tp:taxon-name-part></tp:taxon-name></italic> and <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="yaquia">yaquia</tp:taxon-name-part></tp:taxon-name></italic> are neighbors in the SplitsTree. However, neither <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="venusta">v.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="venusta">venusta</tp:taxon-name-part></tp:taxon-name></italic> and <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="venusta">v.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="cataspila">cataspila</tp:taxon-name-part></tp:taxon-name></italic> nor the three subspecies of <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="grayi">grayi</tp:taxon-name-part></tp:taxon-name></italic> (<italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="grayi">g.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="grayi">grayi</tp:taxon-name-part></tp:taxon-name></italic>, <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="grayi">g.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="emolli">emolli</tp:taxon-name-part></tp:taxon-name></italic>, <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="grayi">g.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="panamensis">panamensis</tp:taxon-name-part></tp:taxon-name></italic>) are clearly distinct.</p>
        <p>Based on a cladistic analysis of morphological traits, <xref ref-type="bibr" rid="B55">Seidel (2002)</xref> recognized the allopatric taxa <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="venusta">v.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="callirostris">callirostris</tp:taxon-name-part></tp:taxon-name></italic> and <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="venusta">v.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="chichiriviche">chichiriviche</tp:taxon-name-part></tp:taxon-name></italic> as subspecies of a distinct species, <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="callirostris">callirostris</tp:taxon-name-part></tp:taxon-name></italic>. However, his results are questionable in the light of current genetic evidence. They included many untenable findings, such as the deeply divergent non-sister placement of two populations of <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="dorbigni">d.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="dorbigni">dorbigni</tp:taxon-name-part></tp:taxon-name></italic> (‘<italic>brasiliensis</italic>’ and ‘<italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys"/><tp:taxon-name-part taxon-name-part-type="species" reg="dorbigni">dorbigni</tp:taxon-name-part></tp:taxon-name></italic>’), or the non-monophyly of the Antillean taxa and of <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="grayi">grayi</tp:taxon-name-part></tp:taxon-name></italic>, or the paraphyly of <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="venusta">venusta</tp:taxon-name-part></tp:taxon-name></italic> with respect to <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="grayi">g.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="grayi">grayi</tp:taxon-name-part></tp:taxon-name></italic> (<xref ref-type="bibr" rid="B55">Seidel 2002</xref>: fig. 2). According to gross morphology, <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="venusta">v.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="callirostris">callirostris</tp:taxon-name-part></tp:taxon-name></italic> and <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="venusta">v.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="chichiriviche">chichiriviche</tp:taxon-name-part></tp:taxon-name></italic> differ little from other <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="venusta">venusta</tp:taxon-name-part></tp:taxon-name></italic> subspecies. With respect to mtDNA, <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="venusta">v.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="callirostris">callirostris</tp:taxon-name-part></tp:taxon-name></italic> and <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="venusta">v.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="chichiriviche">chichiriviche</tp:taxon-name-part></tp:taxon-name></italic> are embedded in the remaining mitochondrial lineages of <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="venusta">venusta</tp:taxon-name-part></tp:taxon-name></italic> (Figs <xref ref-type="fig" rid="F4">4</xref>, <xref ref-type="fig" rid="F5">5</xref>), and our nuclear markers do not provide unambiguous evidence for any classification (Figs <xref ref-type="fig" rid="F6">6</xref>, S8, S9). We therefore continue to treat <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="venusta">v.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="callirostris">callirostris</tp:taxon-name-part></tp:taxon-name></italic> and <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="venusta">v.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="chichiriviche">chichiriviche</tp:taxon-name-part></tp:taxon-name></italic> as subspecies of <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="venusta">venusta</tp:taxon-name-part></tp:taxon-name></italic>, as proposed in <xref ref-type="bibr" rid="B14">Fritz et al. (2012)</xref>.</p>
        <p>Some sequences in the SplitsTree analysis are at first glance misplaced (highlighted with blue circles in Fig. <xref ref-type="fig" rid="F6">6</xref>). This could reflect ancestral polymorphism or hybridization. The latter option seems likely for a specimen (SMF 71417) morphologically identified as <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="grayi">g.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="emolli">emolli</tp:taxon-name-part></tp:taxon-name></italic> (in agreement with its mitochondrial identity; see Figs <xref ref-type="fig" rid="F4">4</xref>, <xref ref-type="fig" rid="F5">5</xref>), which clusters within <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="venusta">v.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="uhrigi">uhrigi</tp:taxon-name-part></tp:taxon-name></italic>. It originates from Costa Rica, where a contact zone of <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="grayi">g.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="emolli">emolli</tp:taxon-name-part></tp:taxon-name></italic> and <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="venusta">v.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="uhrigi">uhrigi</tp:taxon-name-part></tp:taxon-name></italic> along the Caribbean zone is expected (see <xref ref-type="bibr" rid="B13">Fritz et al. 2023</xref>). Regarding another misplaced specimen (MTD D 42599, <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="grayi">g.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="panamensis">panamensis</tp:taxon-name-part></tp:taxon-name></italic>) from Panama, <xref ref-type="bibr" rid="B13">Fritz et al. (2023)</xref> speculated about an artifact because all mutations separating this specimen from other <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="grayi">g.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="panamensis">panamensis</tp:taxon-name-part></tp:taxon-name></italic> occur in only one nuclear locus. However, hybridization and subsequent recombination could also explain this. A third misplaced specimen is a <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="venusta">v.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="uhrigi">uhrigi</tp:taxon-name-part></tp:taxon-name></italic> from Honduras (FMNH 283808), which clusters among <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="venusta">v.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="cataspila">cataspila</tp:taxon-name-part></tp:taxon-name></italic>, reflecting the incomplete differentiation among <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="venusta">venusta</tp:taxon-name-part></tp:taxon-name></italic> subspecies, also revealed by the bifurcating trees (Figs S8, S9).</p>
        <p>Some sequences of North American <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">Trachemys</tp:taxon-name-part></tp:taxon-name></italic> taxa cluster in the phylogenetic analyses either with the West Indian <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">Trachemys</tp:taxon-name-part></tp:taxon-name></italic> species or with <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Pseudemys">Pseudemys</tp:taxon-name-part></tp:taxon-name></italic>. It is speculative whether the latter finding reflects ancestral polymorphism or past hybridization. <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Pseudemys">Pseudemys</tp:taxon-name-part></tp:taxon-name></italic> is widely sympatric with <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">Trachemys</tp:taxon-name-part></tp:taxon-name></italic> in the southeastern USA (compare the maps in TTWG 2021) and it is well known that even very distantly related chelonians are capable of successful hybridization (e.g., <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Graptemys">Graptemys</tp:taxon-name-part></tp:taxon-name></italic> x <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">Trachemys</tp:taxon-name-part></tp:taxon-name></italic>; <xref ref-type="bibr" rid="B18">Gooley et al. 2016</xref>). It is noteworthy that males of North American and West Indian <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">Trachemys</tp:taxon-name-part></tp:taxon-name></italic> share the same sexually dimorphic traits (elongated foreclaws) and the innate courtship behavior consisting of claw vibrations (“titillation”) in front of the female’s head. In contrast, this courtship behavior is unknown in Central and South American <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">Trachemys</tp:taxon-name-part></tp:taxon-name></italic>, in which males do not have greatly elongated foreclaws. However, in some Central and South American taxa males have prominent elongated and upturned snouts, emphasizing head bobbing movements during courtship (<xref ref-type="bibr" rid="B10">Fritz 1990</xref>; <xref ref-type="bibr" rid="B58">Seidel and Fritz 1997</xref>).</p>
        <p>The presence of the titillation behavior is a plesio­morphic character state since it also occurs in other genera (in particular in <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Chrysemys">Chrysemys</tp:taxon-name-part></tp:taxon-name></italic>, <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Graptemys">Graptemys</tp:taxon-name-part></tp:taxon-name></italic>, and <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Pseudemys">Pseudemys</tp:taxon-name-part></tp:taxon-name></italic>), while its loss is an autapomorphy of Central and South American <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">Trachemys</tp:taxon-name-part></tp:taxon-name></italic> which still sporadically display claw titillation in another behavioral context (aggressive male-male encounters; <xref ref-type="bibr" rid="B10">Fritz 1990</xref>, <xref ref-type="bibr" rid="B11">1991</xref>; <xref ref-type="bibr" rid="B58">Seidel and Fritz 1997</xref>; <xref ref-type="bibr" rid="B57">Seidel and Ernst 2017</xref>).</p>
        <p>Compared to our nuclear DNA dataset, phylogenetic analyses of faster evolving mtDNA sequences delivered more information, which albeit reflects only matrilinear evolution confounded by mitochondrial introgression or capture. Except for the above-mentioned unexpected placement of <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="nebulosa">nebulosa</tp:taxon-name-part></tp:taxon-name></italic>, our mitochondrial trees (Figs <xref ref-type="fig" rid="F4">4</xref>, <xref ref-type="fig" rid="F5">5</xref>) contain <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">Trachemys</tp:taxon-name-part></tp:taxon-name></italic> as a well-supported monophylum with <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="ornata">ornata</tp:taxon-name-part></tp:taxon-name></italic> and <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="yaquia">yaquia</tp:taxon-name-part></tp:taxon-name></italic> together as a deeply divergent mitochondrial lineage. <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">Trachemys</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="ornata">ornata</tp:taxon-name-part></tp:taxon-name></italic> and <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="yaquia">yaquia</tp:taxon-name-part></tp:taxon-name></italic> are reciprocally monophyletic; their genetic divergence resembles those between the three subspecies of <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="grayi">grayi</tp:taxon-name-part></tp:taxon-name></italic> or within <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="venusta">venusta</tp:taxon-name-part></tp:taxon-name></italic>. In contrast to the weak mitochondrial divergence of <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="ornata">ornata</tp:taxon-name-part></tp:taxon-name></italic> and <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="yaquia">yaquia</tp:taxon-name-part></tp:taxon-name></italic>, the two taxa appear well separated in our analyses of nuclear DNA (Figs <xref ref-type="fig" rid="F6">6</xref>, S8, S9), supporting their recognition as distinct species.</p>
        <p>In the mitochondrial trees, not all subspecies of <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="venusta">venusta</tp:taxon-name-part></tp:taxon-name></italic> are reciprocally monophyletic, in contrast to the subspecies of <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="dorbigni">dorbigni</tp:taxon-name-part></tp:taxon-name></italic> and <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="grayi">grayi</tp:taxon-name-part></tp:taxon-name></italic> (Figs <xref ref-type="fig" rid="F4">4</xref>, <xref ref-type="fig" rid="F5">5</xref>). The sequences of the subspecies of <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="venusta">venusta</tp:taxon-name-part></tp:taxon-name></italic> are scattered across a polytomy in which also <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="taylori">taylori</tp:taxon-name-part></tp:taxon-name></italic> is embedded. Both the mitochondrial (Figs <xref ref-type="fig" rid="F4">4</xref>, <xref ref-type="fig" rid="F5">5</xref>) and the nuclear analyses (Figs S8, S9) fail to identify <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="taylori">taylori</tp:taxon-name-part></tp:taxon-name></italic> as a lineage distinct from <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="venusta">venusta</tp:taxon-name-part></tp:taxon-name></italic>. This conflicts with the current status of <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="taylori">taylori</tp:taxon-name-part></tp:taxon-name></italic> as a distinct species. Using ND4 and R35 sequences, <xref ref-type="bibr" rid="B47">Parham et al. (2015)</xref> could not resolve the phylogenetic position of <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="taylori">taylori</tp:taxon-name-part></tp:taxon-name></italic>, and the placement of sequences labeled as <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="taylori">taylori</tp:taxon-name-part></tp:taxon-name></italic> in the nuclear phylogeny of <xref ref-type="bibr" rid="B64">Thomson et al. (2021)</xref> is questionable, as misidentified samples appear to have been used (<xref ref-type="bibr" rid="B13">Fritz et al. 2023</xref>). Our present data strongly suggest that <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="taylori">taylori</tp:taxon-name-part></tp:taxon-name></italic> does not represent a distinct species and either is a disjunct population of <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="venusta">venusta</tp:taxon-name-part></tp:taxon-name></italic>, perhaps of <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="venusta">v.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="cataspila">cataspila</tp:taxon-name-part></tp:taxon-name></italic>, a morphologically similar and geographically close taxon, or a subspecies that recently diverged from <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="venusta">venusta</tp:taxon-name-part></tp:taxon-name></italic>. Notably, based on general morphology, <xref ref-type="bibr" rid="B33">Legler and Vogt (2013</xref>: 259) concluded that <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="taylori">taylori</tp:taxon-name-part></tp:taxon-name></italic>, <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="venusta">v.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="cataspila">cataspila</tp:taxon-name-part></tp:taxon-name></italic> and <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="venusta">v.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="venusta">venusta</tp:taxon-name-part></tp:taxon-name></italic> are most closely related. Further research is needed to clarify this situation in detail, but in the light of the current data we propose to treat <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="taylori">taylori</tp:taxon-name-part></tp:taxon-name></italic> as a subspecies of <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="venusta">venusta</tp:taxon-name-part></tp:taxon-name></italic>. Using SNP data, <xref ref-type="bibr" rid="B8">Espindola et al. (2022)</xref> revealed <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="taylori">taylori</tp:taxon-name-part></tp:taxon-name></italic> as sister to a clade comprised of <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="venusta">v.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="venusta">venusta</tp:taxon-name-part></tp:taxon-name></italic> and <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="venusta">v.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="cataspila">cataspila</tp:taxon-name-part></tp:taxon-name></italic>, without discussing taxonomic implications. The branch lengths in their phylogram do not contradict our classification.</p>
        <p><italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">Trachemys</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="venusta">venusta</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="taylori">taylori</tp:taxon-name-part></tp:taxon-name></italic><bold>nov. comb.</bold> is endemic to the endorheic Cuatro Ciénegas Basin of Coahuila, Mexico, from where two further endemic turtle taxa have been described, <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Apalone">Apalone</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="spinifera">spinifera</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="atra">atra</tp:taxon-name-part></tp:taxon-name></italic>, the black spiny softshell turtle, and <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Terrapene">Terrapene</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="coahuila">coahuila</tp:taxon-name-part></tp:taxon-name></italic>, the Coahuilan box turtle. While <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Apalone">A.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="spinifera">s.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="atra">atra</tp:taxon-name-part></tp:taxon-name></italic> was originally described as a distinct species (<xref ref-type="bibr" rid="B70">Webb and Legler 1960</xref>), it later turned out that it is genetically much less differentiated than expected (­<xref ref-type="bibr" rid="B41">McGaugh and Janzen 2008</xref>; <xref ref-type="bibr" rid="B42">McGaugh et al. 2008</xref>; <xref ref-type="bibr" rid="B40">McGaugh 2012</xref>), leading to its recognition as a subspecies of <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Apalone">A.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="spinifera">spinifera</tp:taxon-name-part></tp:taxon-name></italic> (TTWG 2021). Also, the genetic divergence of the morphologically and ecologically divergent aquatic Coahuilan box turtle (cf. <xref ref-type="bibr" rid="B23">Howeth and Brown 2011</xref>; <xref ref-type="bibr" rid="B33">Legler and Vogt 2013</xref>) is unexpectedly weak; phylogenetically it is nested within the widely distributed and allopatric <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Terrapene">Terrapene</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="carolina">carolina</tp:taxon-name-part></tp:taxon-name></italic> (<xref ref-type="bibr" rid="B37">Martin et al. 2021</xref>; <xref ref-type="bibr" rid="B64">Thomson et al. 2021</xref>). This suggests that all endemic turtle taxa in the Cuatro Ciénegas Basin are phylogenetically very young.</p>
        <p>Within the mitochondrial clade of <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">Trachemys</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="venusta">venusta</tp:taxon-name-part></tp:taxon-name></italic>, some taxa correspond to distinct subclades (Figs <xref ref-type="fig" rid="F4">4</xref>, <xref ref-type="fig" rid="F5">5</xref>: <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="venusta">v.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="callirostris">callirostris</tp:taxon-name-part></tp:taxon-name></italic>, <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="venusta">v.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="chichiriviche">chichiriviche</tp:taxon-name-part></tp:taxon-name></italic>, <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="venusta">v.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="taylori">taylori</tp:taxon-name-part></tp:taxon-name></italic>), while others do not (<italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="venusta">v.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="venusta">venusta</tp:taxon-name-part></tp:taxon-name></italic>, <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="venusta">v.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="cataspila">cataspila</tp:taxon-name-part></tp:taxon-name></italic>, <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="venusta">v.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="iversoni">iversoni</tp:taxon-name-part></tp:taxon-name></italic>, <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="venusta">v.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="uhrigi">uhrigi</tp:taxon-name-part></tp:taxon-name></italic>). In contrast to the latter taxa having contiguous parapatric distributions, <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="venusta">v.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="callirostris">callirostris</tp:taxon-name-part></tp:taxon-name></italic>, <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="venusta">v.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="chichiriviche">chichiriviche</tp:taxon-name-part></tp:taxon-name></italic>, and <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="venusta">v.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="taylori">taylori</tp:taxon-name-part></tp:taxon-name></italic> are allopatric (compare maps in TTWG 2021 and our Fig. <xref ref-type="fig" rid="F1">1</xref>). It is remarkable that some of the mitochondrially not clearly distinct taxa appear relatively well-separated in our SplitsTree analysis of nuclear DNA sequences with less than 5% missing data (Fig. <xref ref-type="fig" rid="F6">6</xref>). However, when the SplitsTree analysis is compared to the remaining phylogenetic analyses of nuclear data, the distinction is no longer so clear (Figs S8, S9). Nevertheless, that some samples appear distinct could indicate an incipient differentiation which is not reflected by mtDNA. This is unexpected considering the much slower pace of nuclear DNA evolution. Possibilities that could have contributed to this confusing pattern are mitochondrial introgression, selective sweeps, or the translocation and subsequent hybridization of turtles.</p>
        <p>Several of our samples identified as <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="venusta">v.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="venusta">venusta</tp:taxon-name-part></tp:taxon-name></italic> originate from the region of Acapulco de Juárez, a tourist destination where multiple introductions of <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="venusta">venusta</tp:taxon-name-part></tp:taxon-name></italic> have been inferred (<xref ref-type="bibr" rid="B47">Parham et al. 2015</xref>; <xref ref-type="bibr" rid="B13">Fritz et al. 2023</xref>). This is also underlined by the photos of three live turtles from Acapulco published in <xref ref-type="bibr" rid="B47">Parham et al. (2015</xref>: fig. 3) matching specimens from Tamaulipas (<italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="venusta">v.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="cataspila">cataspila</tp:taxon-name-part></tp:taxon-name></italic>) in having an irregular carapacial coloration with or without small ocelli and broken postorbital stripes. Our museum specimens from Acapulco (MTD D 39071, 39077, 42598) have in contrast complete well-developed carapacial ocelli and wide continuous postorbital stripes, matching the nominotypical subspecies. This supports that anthropogenic admixture plays a role. However, introductions alone cannot explain our genetic results because we also sequenced museum specimens of <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="venusta">v.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="cataspila">cataspila</tp:taxon-name-part></tp:taxon-name></italic> and <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="venusta">v.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="venusta">venusta</tp:taxon-name-part></tp:taxon-name></italic> that have been collected between 1936 and 1955 (Table S1), presumably long before human-mediated long-distance translocations of slider turtles happened. These specimens were genetically also not distinct. Further research, preferably using more informative nuclear genomic markers and more samples, is needed to clarify this intricate situation.</p>
        <p>An inspection of the external morphology of our sequenced museum specimens and published known-locality photographs revealed that some individuals display unexpected traits. While most of our specimens of <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="venusta">v.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="uhrigi">uhrigi</tp:taxon-name-part></tp:taxon-name></italic> (identified according to their collection sites) show the diagnostic characters highlighted in the original description (narrow postorbital stripes, large dark pattern covering most of the plastron; <xref ref-type="bibr" rid="B38">McCord et al. 2010</xref>), two have wide postorbital stripes and a narrow dark plastral pattern (MTD D 41609, Honduras; SMF 77494, Nicaragua). This is in line with the observations by <xref ref-type="bibr" rid="B39">McCranie (2018)</xref> who studied the morphology of many putative <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="venusta">v.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="uhrigi">uhrigi</tp:taxon-name-part></tp:taxon-name></italic> from Honduras and concluded “the diagnostic characters given for that nominal form [<italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="venusta">v.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="uhrigi">uhrigi</tp:taxon-name-part></tp:taxon-name></italic>] … conceal the fact that much more variation occurs in Honduran specimens.”</p>
        <p>It is clear that further research is needed to examine whether the coloration and pattern traits used by <xref ref-type="bibr" rid="B38">McCord et al. (2010)</xref> to tell apart subspecies of Central American sliders represent more than population-specific or even individual variation which has been overestimated by cherry-picking morphologically matching turtles. That these coloration and pattern traits are taxonomically unreliable is supported by photos of two live sliders from Dziuché, Quintana Roo, Mexico, and two preserved specimens from Puerto Morelos in the same Mexican state published in <xref ref-type="bibr" rid="B33">Legler and Vogt (2013</xref>: figs 40.5 and 40.6). According to the collection sites, these turtles represent <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="venusta">v.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="iversoni">iversoni</tp:taxon-name-part></tp:taxon-name></italic>. However, they show narrow to extremely narrow postorbital stripes as described by <xref ref-type="bibr" rid="B38">McCord et al. (2010)</xref> for <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="venusta">v.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="uhrigi">uhrigi</tp:taxon-name-part></tp:taxon-name></italic>. The plastra of the two preserved sliders have a narrow dark figure, whereas <xref ref-type="bibr" rid="B38">McCord et al. (2010)</xref> characterize <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="venusta">v.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="iversoni">iversoni</tp:taxon-name-part></tp:taxon-name></italic> by a “greatly expanded plastral pattern.” Another two live <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="venusta">v.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="iversoni">iversoni</tp:taxon-name-part></tp:taxon-name></italic> figured in TTWG (2021: 169) from Cobá, Quintana Roo, and Muná, Yucatán, Mexico, resemble the specimens depicted in <xref ref-type="bibr" rid="B33">Legler and Vogt (2013)</xref>. Our only studied and sequenced museum specimen of <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="venusta">v.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="iversoni">iversoni</tp:taxon-name-part></tp:taxon-name></italic> (SMF 70537) has a nearly uniform yellow plastron. It only yielded mtDNA sequences, and these were not differentiated from those of nine <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="venusta">v.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="venusta">venusta</tp:taxon-name-part></tp:taxon-name></italic> and <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="venusta">v.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="uhrigi">uhrigi</tp:taxon-name-part></tp:taxon-name></italic>.</p>
        <p>Pictures of another two sliders from Alvarado, Veracruz, Mexico, in <xref ref-type="bibr" rid="B33">Legler and Vogt (2013</xref>: figs 40.1 and 40.2, according to collection site <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="venusta">v.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="venusta">venusta</tp:taxon-name-part></tp:taxon-name></italic>), show that in the same population individuals with narrow and wide postorbital stripes and very different carapacial ocelli may occur. Also, the lacking or weak genetic differentiation of the subspecies of another slider species, <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="scripta">scripta</tp:taxon-name-part></tp:taxon-name></italic>, and among the species and subspecies of two closely related turtle genera, <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Graptemys">Graptemys</tp:taxon-name-part></tp:taxon-name></italic> and <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Pseudemys">Pseudemys</tp:taxon-name-part></tp:taxon-name></italic>, argue for caution (<xref ref-type="bibr" rid="B61">Spinks et al. 2013</xref>; <xref ref-type="bibr" rid="B49">Praschag et al. 2017</xref>; <xref ref-type="bibr" rid="B67">Vamberger et al. 2020</xref>). This situation underlines the concerns voiced in <xref ref-type="bibr" rid="B13">Fritz et al. (2023)</xref> that the conspicuous and elaborate color pattern of sliders and their kin resulted in the recognition of taxa that merely reflect population-level variation, a phenomenon of taxonomic inflation also known from other biota with a complex external morphology (e.g., beetles, butterflies, mollusks; <xref ref-type="bibr" rid="B46">Páll-Gergely et al. 2019</xref>).</p>
        <p>Our analyses of mitochondrial and nuclear DNA sequences do not unambiguously support the distinctness of many subspecies of <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="venusta">venusta</tp:taxon-name-part></tp:taxon-name></italic> (including <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="venusta">v.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="taylori">taylori</tp:taxon-name-part></tp:taxon-name></italic><bold>comb. nov.</bold>), while the three currently recognized subspecies of <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="grayi">grayi</tp:taxon-name-part></tp:taxon-name></italic> are distinct in mtDNA. Remarkably, both <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="venusta">v.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="uhrigi">uhrigi</tp:taxon-name-part></tp:taxon-name></italic> and <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="venusta">v.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="iversoni">iversoni</tp:taxon-name-part></tp:taxon-name></italic> were ignored in the monograph on the freshwater turtles and tortoises of Mexico by <xref ref-type="bibr" rid="B33">Legler and Vogt (2013)</xref> and the respective populations were treated under the nominotypical subspecies <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="venusta">v.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="venusta">venusta</tp:taxon-name-part></tp:taxon-name></italic>.</p>
        <p>Although based on subtle differences only, the color patterns of the allopatric South American subspecies of <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="venusta">venusta</tp:taxon-name-part></tp:taxon-name></italic> (<italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="venusta">v.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="callirostris">callirostris</tp:taxon-name-part></tp:taxon-name></italic>, <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="venusta">v.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="chichiriviche">chichiriviche</tp:taxon-name-part></tp:taxon-name></italic>) and the Mexican subspecies <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="venusta">v.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="cataspila">cataspila</tp:taxon-name-part></tp:taxon-name></italic> are easily recognizable, and this is also true for two subspecies of <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="grayi">grayi</tp:taxon-name-part></tp:taxon-name></italic>, <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="grayi">g.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="grayi">grayi</tp:taxon-name-part></tp:taxon-name></italic> and <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="grayi">g.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="emolli">emolli</tp:taxon-name-part></tp:taxon-name></italic> (compare <xref ref-type="bibr" rid="B50">Pritchard and Trebbau 1984</xref>; <xref ref-type="bibr" rid="B33">Legler and Vogt 2013</xref>; the third subspecies of <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="grayi">grayi</tp:taxon-name-part></tp:taxon-name></italic>, <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="grayi">g.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="panamensis">panamensis</tp:taxon-name-part></tp:taxon-name></italic>, is not sufficiently known but may be distinctive as well, see <xref ref-type="bibr" rid="B13">Fritz et al. 2023</xref>). However, the putatively diagnostic coloration and pattern traits of the remaining subspecies need to be re-examined and seem to be unreliable to tell apart <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="venusta">v.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="venusta">venusta</tp:taxon-name-part></tp:taxon-name></italic>, <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="venusta">v.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="iversoni">iversoni</tp:taxon-name-part></tp:taxon-name></italic> and <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="venusta">v.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="uhrigi">uhrigi</tp:taxon-name-part></tp:taxon-name></italic>; the same could be true for <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="venusta">v.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="cataspila">cataspila</tp:taxon-name-part></tp:taxon-name></italic> and <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="venusta">v.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="taylori">taylori</tp:taxon-name-part></tp:taxon-name></italic><bold>nov. comb.</bold> Thus, in the face of our genetic results, one option could be to synonymize <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="venusta">v.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="iversoni">iversoni</tp:taxon-name-part></tp:taxon-name></italic> and <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="venusta">v.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="uhrigi">uhrigi</tp:taxon-name-part></tp:taxon-name></italic> under <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="venusta">v.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="venusta">venusta</tp:taxon-name-part></tp:taxon-name></italic> and <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="venusta">v.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="taylori">taylori</tp:taxon-name-part></tp:taxon-name></italic> under <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="venusta">v.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="cataspila">cataspila</tp:taxon-name-part></tp:taxon-name></italic>.</p>
        <p>Instead, we call for further research using larger sample sizes and preferably genome-wide nuclear markers such as SNPs or low-coverage genome sequencing. In times of large-scale biodiversity loss, the continued use of subspecies names for allopatric and parapatric populations will help prevent inadvertent admixture and erosion of biodiversity when confiscated turtles are released or during conservation measures (ex-situ breeding, population reinforcements) until a better scientific foundation allows for solid evidence-based conservation decisions. Indeed, analyses of SNP data for <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="venusta">v.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="venusta">venusta</tp:taxon-name-part></tp:taxon-name></italic>, <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="venusta">v.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="cataspila">cataspila</tp:taxon-name-part></tp:taxon-name></italic> and <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="venusta">v.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="taylori">taylori</tp:taxon-name-part></tp:taxon-name></italic> (<xref ref-type="bibr" rid="B8">Espindola et al. 2022</xref>) support that these taxa are distinct.</p>
        <p>In a similar vein, more research is also needed to examine whether the two currently recognized subspecies of <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="nebulosa">nebulosa</tp:taxon-name-part></tp:taxon-name></italic> are distinct. Their recognition is largely based on their allopatric distribution ranges (<xref ref-type="bibr" rid="B33">Legler and Vogt 2013</xref>) with the mainland subspecies <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="nebulosa">n.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="hiltoni">hiltoni</tp:taxon-name-part></tp:taxon-name></italic> in the Río Fuerte drainage while the nominotypical subspecies occurs on the Baja California Peninsula (Fig. <xref ref-type="fig" rid="F1">1</xref>). The putatively diagnostic traits (plastral coloration, pygal bone shape; <xref ref-type="bibr" rid="B56">Seidel 2010</xref>) are subtle and seem to have never been systematically examined. Our genetic data allow no firm conclusions. <xref ref-type="bibr" rid="B47">Parham et al. (2015)</xref> found one individual of <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="nebulosa">n.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="nebulosa">nebulosa</tp:taxon-name-part></tp:taxon-name></italic> slightly different from four specimens of <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="nebulosa">n.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="hiltoni">hiltoni</tp:taxon-name-part></tp:taxon-name></italic> using combined analyses of the mitochondrial ND4 gene and the nuclear R35 intron. However, even though this matches our results, larger sample sizes are needed both for examining genetic and morphological differentiation before conclusions about the validity of the taxa can be drawn. <xref ref-type="bibr" rid="B33">Legler and Vogt (2013</xref>: 299) discussed that <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="nebulosa">n.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="nebulosa">nebulosa</tp:taxon-name-part></tp:taxon-name></italic> and <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="nebulosa">n.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="hiltoni">hiltoni</tp:taxon-name-part></tp:taxon-name></italic> either represent natural relicts of a formerly more widely distributed taxon around the entire Gulf of California or that the Baja California population (<italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="nebulosa">n.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="nebulosa">nebulosa</tp:taxon-name-part></tp:taxon-name></italic>) originates from natural or human-mediated dispersal across the Gulf. However, since the range of <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="yaquia">yaquia</tp:taxon-name-part></tp:taxon-name></italic> would separate a continuous range along the Gulf coast, a subsequent range disruption cannot explain the current distribution pattern (compare Fig. <xref ref-type="fig" rid="F1">1</xref>). An alternative reverse scenario would be <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="nebulosa">nebulosa</tp:taxon-name-part></tp:taxon-name></italic> originated on the Baja Cali­fornia Peninsula and crossed from there the Gulf to the mainland.</p>
      </sec>
    </sec>
    <sec sec-type="Conclusions" id="SECID0EVWDI">
      <title>Conclusions</title>
      <p>Our present study could not clarify the entangled systematics of slider turtles. However, it contributed some valuable new insights:</p>
      <p>(<bold>i</bold>) During the early diversification of <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">Trachemys</tp:taxon-name-part></tp:taxon-name></italic>, <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="nebulosa">nebulosa</tp:taxon-name-part></tp:taxon-name></italic> has captured an alien mitogenome that acts as a genetic poltergeist causing phylogenetic noise in analyses using mtDNA sequences alone or in combination with nuclear data.</p>
      <p>(<bold>ii</bold>) The foreign mitogenome of <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="nebulosa">nebulosa</tp:taxon-name-part></tp:taxon-name></italic> could originate either from the ancestor of the distantly related diamondback <tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Malaclemys"/><tp:taxon-name-part taxon-name-part-type="species" reg="terrapin">terrapin</tp:taxon-name-part></tp:taxon-name><italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Malaclemys">Malaclemys</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="terrapin">terrapin</tp:taxon-name-part></tp:taxon-name></italic> or its extinct sister taxon.</p>
      <p>(<bold>iii</bold>) It remains unclear whether <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="nebulosa">n.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="nebulosa">nebulosa</tp:taxon-name-part></tp:taxon-name></italic> and <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="nebulosa">n.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="hiltoni">hiltoni</tp:taxon-name-part></tp:taxon-name></italic> represent distinct taxa or whether they originate from human-mediated or natural long-distance dispersal across the Gulf of Mexico. However, it is unlikely that <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="nebulosa">nebulosa</tp:taxon-name-part></tp:taxon-name></italic> once was distributed all around the Gulf, because this range would have been interrupted by the occurrence of <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="yaquia">yaquia</tp:taxon-name-part></tp:taxon-name></italic>. A possibility could be that <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="nebulosa">nebulosa</tp:taxon-name-part></tp:taxon-name></italic> originated on the Baja California Peninsula and spread from there to the mainland Río Fuerte drainage.</p>
      <p>(<bold>iv</bold>) Besides <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="nebulosa">nebulosa</tp:taxon-name-part></tp:taxon-name></italic>, there are six additional deeply divergent and monophyletic mitochondrial lineages that correspond to (1) <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="venusta">venusta</tp:taxon-name-part></tp:taxon-name></italic>, (2) <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="ornata">ornata</tp:taxon-name-part></tp:taxon-name></italic> + <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="yaquia">yaquia</tp:taxon-name-part></tp:taxon-name></italic>, (3) <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="grayi">grayi</tp:taxon-name-part></tp:taxon-name></italic>, (4) <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="dorbigni">dorbigni</tp:taxon-name-part></tp:taxon-name></italic> + <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="medemi">medemi</tp:taxon-name-part></tp:taxon-name></italic>, (5) <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="gaigeae">gaigeae</tp:taxon-name-part></tp:taxon-name></italic> + <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="scripta">scripta</tp:taxon-name-part></tp:taxon-name></italic>, and (6) West Indian <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">Trachemys</tp:taxon-name-part></tp:taxon-name></italic>. These lineages are also supported by our nuclear markers.</p>
      <p>(<bold>v</bold>) For <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="gaigeae">gaigeae</tp:taxon-name-part></tp:taxon-name></italic>, another much younger mitochondrial capture event is likely because its mitogenome is sister to <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="scripta">scripta</tp:taxon-name-part></tp:taxon-name></italic>, although <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="gaigeae">gaigeae</tp:taxon-name-part></tp:taxon-name></italic> is highly divergent in nuclear markers and resembles Mexican, Central and South American <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">Trachemys</tp:taxon-name-part></tp:taxon-name></italic> species in morphology, sexual dimorphism and courtship behavior.</p>
      <p>(<bold>vi</bold>) <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">Trachemys</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="ornata">ornata</tp:taxon-name-part></tp:taxon-name></italic> and <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="yaquia">yaquia</tp:taxon-name-part></tp:taxon-name></italic> are distinct taxa with weak mitochondrial divergence, resembling intraspecific mitochondrial divergences in other <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">Trachemys</tp:taxon-name-part></tp:taxon-name></italic> species. However, they differ in our nuclear DNA analyses, supporting their species status.</p>
      <p>(<bold>vii</bold>) <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">Trachemys</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="taylori">taylori</tp:taxon-name-part></tp:taxon-name></italic> is neither distinct in our mitochondrial nor nuclear DNA markers and could be a recently isolated population of <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="venusta">venusta</tp:taxon-name-part></tp:taxon-name></italic>. We conclude that <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="taylori">taylori</tp:taxon-name-part></tp:taxon-name></italic> is conspecific with <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="venusta">venusta</tp:taxon-name-part></tp:taxon-name></italic> and identify it as the subspecies <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">Trachemys</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="venusta">venusta</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="taylori">taylori</tp:taxon-name-part></tp:taxon-name></italic><bold>nov. comb.</bold> This classification is in line with recently published SNP data (<xref ref-type="bibr" rid="B8">Espindola et al. 2022</xref>) that reveal <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="venusta">v.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="taylori">taylori</tp:taxon-name-part></tp:taxon-name></italic> as distinct and place it sister to <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="venusta">v.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="venusta">venusta</tp:taxon-name-part></tp:taxon-name></italic> and <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="venusta">v.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="cataspila">cataspila</tp:taxon-name-part></tp:taxon-name></italic>.</p>
      <p>(<bold>viii</bold>) The number of currently recognized subspecies in Mexican and Central American <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">T.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="venusta">venusta</tp:taxon-name-part></tp:taxon-name></italic> is most likely overestimated. Coloration and pattern traits used for diagnosing subspecies are unreliable and could represent population-specific or even individual variation. Further research using more informative nuclear genomic markers and a re-examination of external morphology are needed to lay a solid taxonomic foundation for any conservation strategy.</p>
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    <ack>
      <title>Acknowledgements</title>
      <p>Gunther Köhler allowed sampling specimens from the collection of the Senckenberg Museum Frankfurt. Turtles sampled by the late coauthor Philip Rosen were studied under appropriate scientific research permits from the Secretaría de Medio Ambiente y Recursos Naturales (SEMARNAT), Mexico. Andrew Coleman, Georg Gassner, Alejandra Monsiváis, and Anders Rhodin provided some turtle photos. Markward Herbert Fischer helped to produce the map. Anke Müller (Senckenberg Dresden) sequenced many samples for us. Anders Rhodin and two anonymous reviewers provided constructive comments on the manuscript of this study.</p>
    </ack>
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    <sec sec-type="supplementary-material">
      <title>Supplementary materials</title>
      <supplementary-material id="S1" position="float" orientation="portrait" xlink:type="simple">
        <object-id content-type="doi">10.3897/vz.74.e125958.suppl1</object-id>
        <object-id content-type="arpha">91D3C412-9809-59A9-83D5-BBAAEA05A52C</object-id>
        <label>Supplementary Material 1</label>
        <caption>
          <p>Table S1</p>
        </caption>
        <statement content-type="dataType">
          <label>Data type</label>
          <p><bold/>: .xlsx</p>
        </statement>
        <statement content-type="notes">
          <label>Explanation notes</label>
          <p><bold/>: Samples and DNA sequences used in the present study.</p>
        </statement>
        <media xlink:href="vertebrate-zoology-74-435-s001.xlsx" mimetype="application" mime-subtype="vnd.openxmlformats-officedocument.spreadsheetml.sheet" position="float" orientation="portrait" xlink:type="simple" id="oo_1080974.xlsx">
          <uri content-type="original_file">https://binary.pensoft.net/file/1080974</uri>
        </media>
        <permissions>
          <license xlink:type="simple">
            <license-p>This dataset is made available under the Open Database License (http://opendatacommons.org/­licenses/odbl/1.0). The Open Database License (ODbL) is a license agreement intended to allow users to freely share, modify, and use this dataset while maintaining this same freedom for others, provided that the original source and author(s) are credited.</license-p>
          </license>
        </permissions>
        <attrib specific-use="authors">Fritz U, Herrmann H-W, Rosen PC, Auer M, Vargas-Ramírez M, Kehlmaier C (2024)</attrib>
      </supplementary-material>
      <supplementary-material id="S2" position="float" orientation="portrait" xlink:type="simple">
        <object-id content-type="doi">10.3897/vz.74.e125958.suppl2</object-id>
        <object-id content-type="arpha">AC92B9B6-07C7-5F79-8F29-969F23B0E20D</object-id>
        <label>Supplementary Material 2</label>
        <caption>
          <p>Tables S2–S10</p>
        </caption>
        <statement content-type="dataType">
          <label>Data type</label>
          <p><bold/>: .pdf</p>
        </statement>
        <statement content-type="notes">
          <label>Explanation notes</label>
          <p><bold>Table S2.</bold> Applied changes to DNA extraction protocol of <xref ref-type="bibr" rid="B48">Patzold et al. (2020)</xref>. — <bold>Table S3.</bold> PCR primer pairs for amplicon sequencing and bait-library preparation and their PCR conditions. — <bold>Table S4.</bold> Results of contamination screening using FastQScreen (Wingett et al. 2018) for the obtained quality-filtered reads of sample SMF 22291 (<italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">Trachemys</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="venusta">venusta</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="cataspila">cataspila</tp:taxon-name-part></tp:taxon-name></italic>) to assess endogenous DNA content in relation to potential contamination sources. — <bold>Table S5.</bold> Mapping details for the samples processed with Next Generation Sequencing. — <bold>Table S6</bold>. The best evolutionary models and partitioning schemes for the mitochondrial dataset as determined by PartitionFinder2 applying the greedy search scheme and the Bayesian Information Criterion. — <bold>Table S7.</bold> Data blocks of the mitochondrial DNA alignment used for phylogenetic analyses. — <bold>Table S8.</bold> The best evolutionary models and partitioning schemes for the nuclear dataset as determined by PartitionFinder2 applying the greedy search scheme and the Bayesian Information Criterion. — <bold>Table S9.</bold> Data blocks of the nuclear DNA alignment used for phylogenetic analyses. — <bold>Table S10.</bold> Comparison of the molecular clock estimates (in million years ago) obtained with the concatenated nuclear and mitochondrial DNA dataset (<xref ref-type="bibr" rid="B14">Fritz et al. 2012</xref>) and the mtDNA dataset only (this study).</p>
        </statement>
        <media xlink:href="vertebrate-zoology-74-435-s002.pdf" mimetype="application" mime-subtype="pdf" position="float" orientation="portrait" xlink:type="simple" id="oo_1080975.pdf">
          <uri content-type="original_file">https://binary.pensoft.net/file/1080975</uri>
        </media>
        <permissions>
          <license xlink:type="simple">
            <license-p>This dataset is made available under the Open Database License (http://opendatacommons.org/­licenses/odbl/1.0). The Open Database License (ODbL) is a license agreement intended to allow users to freely share, modify, and use this dataset while maintaining this same freedom for others, provided that the original source and author(s) are credited.</license-p>
          </license>
        </permissions>
        <attrib specific-use="authors">Fritz U, Herrmann H-W, Rosen PC, Auer M, Vargas-Ramírez M, Kehlmaier C (2024)</attrib>
      </supplementary-material>
      <supplementary-material id="S3" position="float" orientation="portrait" xlink:type="simple">
        <object-id content-type="doi">10.3897/vz.74.e125958.suppl3</object-id>
        <object-id content-type="arpha">43FCC3BA-2BBB-53D7-91ED-EB01E7AA0FCB</object-id>
        <label>Supplementary Material 3</label>
        <caption>
          <p>Figures S1–S9</p>
        </caption>
        <statement content-type="dataType">
          <label>Data type</label>
          <p><bold/>: .pdf</p>
        </statement>
        <statement content-type="notes">
          <label>Explanation notes</label>
          <p><bold>Table S1.</bold> D1000-TapeStation plot of the single-stranded sequencing library of sample SMF 22291 (<italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">Trachemys</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="venusta">venusta</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="cataspila">cataspila</tp:taxon-name-part></tp:taxon-name></italic>) after two rounds of in-solution hybridization capture. — <bold>Figure S2.</bold> Scaled assembly for the mitogenome of sample SMF 22291 (<italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">Trachemys</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="venusta">venusta</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="cataspila">cataspila</tp:taxon-name-part></tp:taxon-name></italic>) as seen in Tablet. — <bold>Figure S3.</bold> Lengths of 549,515 mapped mitochondrial reads of sample SMF 22291 (<italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">Trachemys</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="venusta">venusta</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="cataspila">cataspila</tp:taxon-name-part></tp:taxon-name></italic>) ranging from 35 bp to 143 bp, with an average read length of 65 bp. — <bold>Figure S4.</bold> Misincorporation plot generated with mapDamage 2.0 (<xref ref-type="bibr" rid="B27">Jónsson et al. 2013</xref>) for reads of specimen SMF 22291 (<italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">Trachemys</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="venusta">venusta</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="cataspila">cataspila</tp:taxon-name-part></tp:taxon-name></italic>) mapped to a published mitogenome of <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">Trachemys</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="scripta">scripta</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="elegans">elegans</tp:taxon-name-part></tp:taxon-name></italic> (<ext-link ext-link-type="gen" xlink:href="KM216748" xlink:type="simple">KM216748</ext-link>). — <bold>Figure S5.</bold> Scaled assemblies for the nuclear loci of sample SMF 22291 (<italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">Trachemys</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="venusta">venusta</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="cataspila">cataspila</tp:taxon-name-part></tp:taxon-name></italic>) as seen in Tablet. — <bold>Figure S6.</bold> Lengths of 3158 mapped nuclear reads of sample SMF 22291 (<italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">Trachemys</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="venusta">venusta</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="subspecies" reg="cataspila">cataspila</tp:taxon-name-part></tp:taxon-name></italic>) ranging from 35 bp to 143 bp, with an average read length of 60 bp. — <bold>Figure S7.</bold> Divergence time estimates for <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">Trachemys</tp:taxon-name-part></tp:taxon-name></italic> and related taxa using a concatenated mtDNA alignment (3221 bp; 12S, ND4L, ND4, cyt <italic>b</italic> plus adjacent tRNA-Thr) and the same settings and fossil calibration points as in <xref ref-type="bibr" rid="B14">Fritz et al. (2012)</xref>. — <bold>Figure S8.</bold> Nuclear phylogeny of <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">Trachemys</tp:taxon-name-part></tp:taxon-name></italic> species and related taxa as inferred by RAxML 8.0.0 rooted with <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Deirochelys">Deirochelys</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="reticularia">reticularia</tp:taxon-name-part></tp:taxon-name></italic> based on phased sequences of five nuclear loci (Cmos, ODC, R35, Rag1, Rag2, 3396 bp, 106 specimens). — <bold>Figure S9.</bold> Nuclear phylogeny of <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Trachemys">Trachemys</tp:taxon-name-part></tp:taxon-name></italic> species and related taxa as inferred by MrBayes 3.2.6, rooted with <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Deirochelys">Deirochelys</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="reticularia">reticularia</tp:taxon-name-part></tp:taxon-name></italic> based on phased sequences of five nuclear loci (Cmos, ODC, R35, Rag1, Rag2, 3396 bp, 106 specimens).</p>
        </statement>
        <media xlink:href="vertebrate-zoology-74-435-s003.pdf" mimetype="application" mime-subtype="pdf" position="float" orientation="portrait" xlink:type="simple" id="oo_1080976.pdf">
          <uri content-type="original_file">https://binary.pensoft.net/file/1080976</uri>
        </media>
        <permissions>
          <license xlink:type="simple">
            <license-p>This dataset is made available under the Open Database License (http://opendatacommons.org/­licenses/odbl/1.0). The Open Database License (ODbL) is a license agreement intended to allow users to freely share, modify, and use this dataset while maintaining this same freedom for others, provided that the original source and author(s) are credited.</license-p>
          </license>
        </permissions>
        <attrib specific-use="authors">Fritz U, Herrmann H-W, Rosen PC, Auer M, Vargas-Ramírez M, Kehlmaier C (2024)</attrib>
      </supplementary-material>
    </sec>
  </back>
</article>
