Research Article |
Academic editor: Clara Stefen
© 2024 Arlo Hinckley, Jesús E. Maldonado, Noriko Tamura, Jennifer A. Leonard, Melissa T. R. Hawkins.
This is an open access article distributed under the terms of the CC0 Public Domain Dedication.
Citation:
Hinckley A, Maldonado JE, Tamura N, Leonard JA, Hawkins MTR (2024) Lost in synonymy: Integrative species delimitation reveals two unrecognized species of Southern Asian tree squirrels (Rodentia: Sciuridae: Callosciurinae). Vertebrate Zoology 74: 683-707. https://doi.org/10.3897/vz.74.e133467
|
Abstract
We present a comprehensive integrative taxonomic review of Callosciurus caniceps and Tamiops mcclellandii as they are currently defined. This review combines published molecular evidence, craniodental morphometrics, pelage and bacular variation, evaluations of potential hybrid zones using museum specimens and citizen science photographs, and, for C. caniceps, bioacoustic evidence. Our findings lead to the recognition of two species that had been lost in synonymy and highlight future perspectives on species delimitation in Sciuridae. By comparing phenotypic differentiation across climatic and vegetation transitions and contextualizing our results with the evolutionary history of our study systems, we provide insights into distribution, ecogeographical patterns, and speciation drivers in Southeast Asian vertebrates.
Baculum, bioacoustics, biodiversity, citizen science, Mammalia, morphometrics, Southeast Asia, speciation, taxonomy
In our recent effort (
Map of tropical East Asia indicating the localities of museum specimens examined in this study for Callosciurus caniceps. Different subspecies are labeled with different symbols, while different colors illustrate the potential distribution of the two major genetic lineages described by
Callosciurus caniceps is an omnivorous, mostly arboreal species, that lives in a wide range of habitats including primary and secondary forests, gardens, and plantations in Thailand, peninsular Myanmar, peninsular Malaysia and adjacent islands (Fig.
The past two decades have provided insights into the molecular systematics of C. caniceps. A recent phylogenetic analysis based on cyt b that included a single C. caniceps population demonstrated that this species is most closely related to C. phayrei (
The taxon Tamiops mcclellandii is largely insectivorous and strictly arboreal, inhabiting the trunks and main branches of tall trees of forests and plantations (Bonhote, 1903;
Map of tropical East Asia indicating the localities of museum specimens examined in this study for Tamiops mcclellandii. Different subspecies are labeled with different symbols, while different colors illustrate the potential distribution of the two major genetic lineages described by
Recent phylogenetic analyses (
Here, we present a comprehensive integrative taxonomic review of C. caniceps and T. mcclellandii based on the molecular evidence of
Molecular (
Twenty-six craniodental measurements were collected by M. Hawkins for C. caniceps. These were collected as defined in
Twenty-six measurements were collected by A. Hinckley for T. mcclellandii, as defined in
We followed the terminology of
We log-transformed each measurement prior to computing the principal component analysis (PCA) so that the data was analyzed on the basis of correlations instead of covariances. PCA was implemented in R (R Core Team 2013), with results extracted and visualized with the following functions of the ‘factoextra’ package (
We followed the standardized and statistically robust framework proposed by
Museum specimen-based evidence was complemented with citizen science data from iNaturalist, Observation, and India Biodiversity records with associated images. Morphological results indicated that separately evolving metapopulation lineages within C. caniceps and T. mcclellandii were diagnosable based on pelage features. This approach allowed us to gain insights into the fine-scale distribution and phenological pelage variation of putative species. Verified records with pictures were retrieved from GBIF. In addition, unverified iNaturalist records, with less than three identifications, were also examined across the putative contact area among both C. caniceps lineages in May 2024 (Table S2). Several counties generally associated with protected areas, touristic sites or cities (e.g., Kaeng Krachan NP, Khao Yai NP, Fraser Hill, Chiang Dao, Phuket, Hat Yai, Bangkok, Kuala Lumpur, etc.) had many records and were far away from the contact zone. In these counties a single record was generally kept for the sake of simplicity. We were able to confidently verify a total of 189 citizen science records from unique localities for C. caniceps and 39 for T. mcclellandii. We generated species occurrence maps in RStudio v. 2023.09 with these citizen science records and verified museum specimen records, following the multispecies species occurrence map tutorial at https://github.com/wtesto/SpeciesOccurrenceMapping.
A total of 84 mating call events emitted by males were recorded by N. Tamura for the putative/recognized species C. caniceps, C. concolor, and C. inornatus, in the course of several published studies (
Principal Component Analysis and univariate plots were run as described for the craniodental morphometrics methodology. Discriminant analysis (DA) and standard univariate statistics were run following
Morphometric evidence was consistent with the molecular evidence of
Morphometric variation in Callosciurus caniceps. First and second principal components from an analysis of 11 craniodental variables. Samples are colored according to the two main lineages from Indochina (in blue) and Sundaland (in orange), and the Koh Tao dwarf population (in pink). Different subspecies are labeled with different symbol-color combinations.
Morphometric variation in Tamiops mcclellandii. A First and second principal components from an analysis of 17 craniodental variables. B Second and third principal components of the same analysis. Samples are colored according to the two major lineages: Sundaland and Indochina (in blue and green), and Himalayas and Arakan Range (in orange). The former of which is further subdivided in two lineages shown here for the sake of comparison: NE Indochina (in green) and remaining Indochina and Sundaland (in blue). Different subspecies are labeled with different symbols.
In C. caniceps, the craniodental PCA discriminated the northern and southern lineages based on size, with a small degree of overlap (Fig.
In T. mcclellandii, the craniodental PCA discriminated between northern and southern lineages based on shape, with only a small degree of overlap (Fig.
Pelage is a key trait in subspecific taxonomy and appears to reflect evolutionary history in C. caniceps, and T. mcclellandii, since major lineages within each taxon are diagnosable based on this trait (see taxonomic section for a description of pelage variation in each of these lineages). Conversely, pelage was largely inconsistent based on molecular evidence within the south T. mcclellandii lineage. A careful examination of a large series at NHMUK suggests that the red suffusion in the dorsal pelage displayed by Indochinese T. m. barbei is affected by sex and phenology. Specimens of T. m. leucotis and T. m. barbei collected at the same localities (Perak, Semangko Pass, Ginting Bidai) and time of the year suggest that females usually exhibit a more reddish suffusion than males. Similarly, a comparison of specimens or iNaturalist pictures from same locations but different times of the year showed that specimens had a more reddish coloration during the wet season. The differentiation between T. m. kongensis and T. m. collinus seems to be the result of ecophenotypic variation, since the former represents a wetter area form, and the latter, a drier area form. These subspecies lack cohesive ranges since some individuals that resemble collinus are in the range of kongensis (drier central Thailand).
Bacular variation reflects evolutionary history in C. caniceps, and T. mcclellandii, since major lineages within each of these taxa are diagnosable based on several features (see taxonomic section for a description of baculum variation in each of these lineages).
Both, the PCA and DA discriminated the northern and southern genetic lineages of C. caniceps and its close relative C. inornatus with just some minor overlap (Fig.
Variation in mating calls of Callosciurus species. A Principal Component Analysis highlighting mating call variation. B Univariate plot showing the number of pulses per call. C Univariate plot of pulse intervals, in seconds. D Univariate plot of frequency modulation, in Hz. Different taxa are represented by distinct symbols.
Based on our findings, which unite molecular phylogenetic (
Sciurus caniceps Gray, 1842, Annals and Magazine of Natural History (Series 1) 10: 263.
Sciurus chrysonotus Blyth, 1847, Journal of the Asiatic Society of Bengal 16: 873.
Sciurus bimaculatus Temminck, 1853, Esquisses zoologiques sur la côte de Guiné, Mammifères: 251.
Sciurus epomophorus Bonhote, 1901, Annals and Magazine of Natural History (Series 7) 7: 272.
Sciurus davisoni Bonhote, 1901, Annals and Magazine of Natural History (Series 7) 7: 273.
Sciurus sullivanus Miller, 1903a, Smithsonian Miscellaneous Collections 45: 17.
Sciurus domelicus Miller, 1903a, Smithsonian Miscellaneous Collections 45: 18.
Sciurus bentincanus Miller, 1903a, Smithsonian Miscellaneous Collections 45: 19.
Sciurus matthaeus Miller, 1903a, Smithsonian Miscellaneous Collections 45: 19.
Sciurus casensis Miller, 1903a, Smithsonian Miscellaneous Collections 45: 19.
Sciurus lucas Miller, 1903a, Smithsonian Miscellaneous Collections 45: 20.
Sciurus altinsularis Miller, 1903a, Smithsonian Miscellaneous Collections 45: 21.
Sciurus epomophorus milleri Robinson & Wroughton, 1911, Journal of the Federated Malay States Museum 4: 233.
Sciurus concolor fallax Robinson & Kloss, 1914, Annals and Magazine of Natural History (Series 8) 13: 225.
Sciurus concolor samuiensis Robinson & Kloss, 1914, Annals and Magazine of Natural History (Series 8) 13: 226.
Sciurus epomophorus inexpectatus Kloss, 1916, Journal of the Natural History Society of Siam 2: 178.
Sciurus helgei Gyldenstolpe, 1917, Kungliga Svenska Vetenskapsakademiens Handlingar 57: 34.
Callosciurus epomophorus nakanus Thomas & Robinson, 1921, Annals and Magazine of Natural History (Series 9) 7: 120.
Callosciurus epomophorus mapravis Thomas & Robinson, 1921, Annals and Magazine of Natural History (Series 9) 7: 120.
Callosciurus epomophorus panjius Thomas & Robinson, 1921, Annals and Magazine of Natural History (Series 9) 7: 119.
Sciurus caniceps helvus Shamel, 1930, Journal of Mammalogy 11: 72.
Not specified in species description.
Dorsal and ventral views of the skins of (A) Callosciurus caniceps (NHMUK 41.1817, lectotype); live images of (B) C. caniceps caniceps taken by Natthaphat Chotjuckdikul (Te’) in Bangkok, Thailand; (C) C. caniceps bimaculatus taken by Pattaraporn Vangtal in Railay Bay Beach, Krabi, Thailand; and (D) C. concolor taken by Cheong Weng Chun in Fraser’s Hill, Pahang, Malaysia.
N Tenasserim, Burma [= Tanintharyi province, Myanmar].
A relatively large-sized Callosciurus (average HB = 228.6 mm, PL = 52.6 mm; Table S6) distinguishable from all other relatives by a sharply marked black tail tip along with two alternative pelage combinations corresponding to its subspecies. In the northern part of its distribution, it displays a bright ochraceous/rufus orange on the flanks and dorsum during the dry season and agouti gray in the wet season. The bright orange fades into agouti gray as it approaches the venter, crown, and proximal one-tenth of the tail. The ears are agouti gray, generally with white hairs along the rim, occasionally resembling a tuft (C. c. caniceps;
A detailed comparison with its closest relative, C. concolor, has been included in the following account. Callosciurus caniceps can be distinguished from all parapatric/sympatric squirrels, including C. concolor, by the combination of gray ventral pelage, lack of a black band in the flank, presence of an abruptly marked black tail tip, and during the dry season, bright ochraceous/rufus orange in flanks and dorsum or rusty reddish suffusion on the side of the neck and groin.
Distributed across mainland Thailand west to the Mekong and up to ca. 19ºN latitude, covering the northern two thirds of peninsular Thailand, and southern Myanmar (Figs
Generalist species found in dry deciduous forest and dry evergreen forest, bamboo forest, secondary forest, parks, gardens, and coconut plantations (
This species has been observed feeding on fruits of Terminalia catappa and Tamarindus indica, and flowers of Triplaris americana in Bangkok parks, and on ten species of plants including Ficus fruits, Sterculia pexa and Acasia seeds, or Mucuna macrocarpa nectar in Sakaerat Biosphere Reserve, and Musa acuminata in Kanchanaburi (
Reproductive information is scarce. A female collected on 11 March 1900 in the Mergui archipelago had two embryos (W.L. Abbott field notes, USNM Mammal Division Archives). No other reproductive information was easily obtained.
Recorded in several protected areas, including Doi Pha Hom Pok, Khao Yai, Kaeng Krachan, Erawan, Nam Tok Tham Sadet, Sirinat, Mu Ko Lanta, Khao Luang, and Hat Chao Mai National Parks, Sakaerat Biosphere Reserve, and Chiang Dao Wildlife Sanctuary (iNaturalist; Table S1). Despite these records, the frequency of detection of C. caniceps was lower in areas with human activity compared to adjacent forests even when human activity and fragmentation impacts were minimal (
The subspecies C. c. bimaculatus and C. c. caniceps represent two distinct but recently diverged mitochondrial clades, exhibiting limited nuclear differentiation (
Sciurus concolor Blyth, 1855, Journal of the Asiatic Society of Bengal 24: 474.
Sciurus adangensis Miller, 1903a, Smithsonian Miscellaneous Collections 45: 17.
Sciurus lancavensis Miller, 1903a, Smithsonian Miscellaneous Collections 45: 16.
Sciurus concolor terutavensis Thomas & Wroughton, 1909, Annals and Magazine of Natural History (Series 8) 4: 535.
Callosciurus erubescens Cabrera, 1917, Boletín de la Real Sociedad Española de Historia Natural 17: 518.
Callosciurus concolor telibius Thomas & Robinson, 1921, Annals and Magazine of Natural History (Series 9) 7: 121.
Callosciurus moheius Thomas & Robinson, 1921, Annals and Magazine of Natural History Annals and Magazine of Natural History (Series 9) 7: 122.
Callosciurus moheius mohillius Thomas & Robinson, 1921, Annals and Magazine of Natural History (Series 9) 7: 122.
ZSI9328. Skin and skull, collected or donated by G. Moxon in 1847. This specimen was not cited in the “Annotated Catalogue of the Type Specimens of the Indian Museum” (
From the vicinity of Malacca” [Melaka, Malaysia].
A medium-sized Callosciurus (average HB = 218.3 mm, PL = 49.1 mm) that can be distinguished from all other relatives by the combination of the following morphological characters: “reddish suffusion of color occurring on the mid dorsum [that usually extends to the proximal section of the tail] but not on the sides of the neck and body…; absence of a sharply marked off, quite black tip of the tail… [except in northern edge populations; see following sections], and a cool silvery gray color of the venter” (
Callosciurus concolor can be distinguished from its closest relative, C. caniceps, by its smaller size (average HB: 220 vs 235 mm; with the exception of the C. caniceps Koh Tao Island dwarf population, which is even smaller than C. concolor and excluded from this comparison). Additionally, this species exhibits relatively longer postorbital processes and a distinct distribution of ornamented pelage coloration. During the dry season, its dorsum has a reddish suffusion in the midline that generally extends to the most proximal side of the tail, while C. caniceps has a brighter, ochraceous/rufus orange in flanks and dorsum (C. c. caniceps) or a rusty reddish suffusion in the side of the neck and groin, and frequently, in the flanks and upper part of the legs (C. c. bimaculatus; Fig.
Baculum morphology provides additional distinguishing characteristics between C. concolor and C. caniceps: Presence vs absence of a dorso-lateral (right) expansion at shaft proximal end in C. caniceps; presence vs absence of a large lateral expansion at blade base posterior half in C. caniceps, giving a sinuous (C. concolor) vs straight (C. caniceps) appearance from a lateral view, and a relatively rounded/oval (C. concolor) vs triangular (C. caniceps) shaped appearance from a dorsal view (Fig.
Finally, C. concolor can be easily distinguished from its closest genetic relative, C. caniceps, by its generally distinct mating call (Fig.
It can be easily distinguished from sympatric congeneric C. notatus and C. nigrovittatus by its lack of lateral stripes, and from C. erythraeus by its silvery gray venter, grayish head and limbs which contrast with the remaining dorsum, and darker tail tip vs reddish brown, reddish or agouti venter, homogeneously olive brown colored dorsum, including head, limbs and tail. It can be distinguished from sympatric Sundasciurus robinsoni, S. tahan, and S. tenuis by its larger size, grayish head and limbs, bushier dark-tipped tailed, and thinner and less contrasted pale eye ring, and from S. hippurus by its silvery gray venter coloration with just some black or dark gray/brown in the tail tip vs rusty red venter with entirely black tail in S. hippurus.
Distributed across the Thai-Malay peninsula extending from Melaka to Trang province in the west coast and from central Pahang to Surat Thani in the east coast (Figs
Recorded in Labis and Ulu Gombak Forest Reserves, Hala Bala Wildlife Sanctuary, Perlis, Gunong Stong and Selangor State Parks, Tasik Bera Ramsar Site, and Taman Negara National Park (
Northwestern edge populations from the islands of Langkawi (named form lancavensis), Telibun [Ko Libong] (named form telibius), Adang (named form adangensis) and Mohea, Nakhon Si Thammarat (named forms mehoeius/mohillius), have a pelage that is somewhat intermediate between C. concolor and C. caniceps bimaculatus, but more similar to the former (This study;
Sciurus mcclellandi Horsfield, 1839, Proceedings of the Zoological Society of London 1839: 152.
Sciurus pembertoni Blyth, 1842, Journal of the Asiatic Society of Bengal 11: 887.
Sciurus macclellandi manipurensis Bonhote, 1900, Annals and Magazine of Natural History (Series 7) 5: 51.
Holotype not specified in description. Two examined specimens are labeled as cotypes: NHMUK 79.11.21.372, skin and skull, an adult male, also marked as “lectotype”, and NHMUK 79.11.21.373, skin and skull, a young adult marked as “lectoparatype”.
“Assam” [= Assam, India].
A small-sized Tamiops (average HB = 116.5 mm, W = 56.7 g, GLS = 32.7 mm; Table S8;
Dorsal and ventral views of the skins of (A) Tamiops mcclellandii (NHMUK 79.11.21.372, lectotype), (B) T. barbei barbei (NHMUK 1914.7.8.36, topotype), and (C) T. barbei inconstans (NHMUK 12.7.25.31, holotype); live images of (D) T. mcclellandii taken by Lee Alloway in Kumarkata, Assam, India, and (E) T. barbei taken by Andaman Kaosung in Kaeng Krachan District, Thailand.
It can be externally distinguished from its allopatric relatives Tamiops maritimus and T. mishanica, as well as the allopatric/elevational parapatric T. swinhoei, based on its smaller size and outer pair of light stripes which are connected to a light facial stripe in T. mcclellandii, but just extend to the shoulder in the other species (except in T. swinhoei in which it can be rarely connected with a faint line). Its pelage is also generally harsher, thinner, and shorter vs softer, denser and longer in T. swinhoei (although these features are affected by latitude, elevation and seasonality), and it lacks a yellow/orange hue in its ear tufts and reddish suffusion in crown while these features are frequently present in T. swinhoei. Its facial stripe is distinctive vs diffuse in T. minshanica, and its venter is buff or gray colored, lacking any red hue vs rust colored in T. minshanica (
Distributed across the Eastern Himalayas including Nepal, Sikkim (NE India), Bhutan, Assam and Arunachal Pradesh (NE India), Kachin (Myanmar), and Yingjiang County, north of the Daying River (SW China; Figs
Recorded in Neora Valley, Royal Manas, Namdapha, Jigme Singye Wangchuck, Phrumsengla, and Nat Ma Taung National Parks, Buxa and Pakke Tiger Reserves, Eaglenest and Pangolakha Wildlife Sanctuaries, and Cherrapunji-Mawsynram Reserve Forest (Table S1; iNaturalist;
Cyt b pairwise uncorrected genetic distances between populations from Sikkim and the Arakan Range are relatively high (ca. 5–6%) but there is little nuclear differentiation (
Sciurus barbei Blyth, 1847, Journal of the Asiatic Society of Bengal 16: 875.
Tamias [sic] leucotis Temminck, 1853, Esquisses zoologiques sur la côte de Guiné, Mammifères: 252.
Sciurus mcclellandi kongensis Bonhote, 1901, Proceedings of the Zoological Society of London 1901: 55.
Sciurus novemlineatus Miller, 1903b, Proceedings of the Biological Society of Washington 16: 147.
Tamiops inconstans Thomas, 1920, Annals and Magazine of Natural History (Series 9) 5: 306.
Tamiops mcclellandi collinus Moore, 1958, American Museum Novitates 1879: 1.
Two syntypes are housed in the National Zoological Collection of the Zoological Survey of India: ZSI9482 and ZSI9483. These represent two unsexed study skins and skulls collected by J. Barbe and have been previously cited by their former Indian Museum catalog numbers: c2 and d2. The third syntype described by Blyth could not be found in this collection (
Zami River, Ye Province, 100 miles south of Moulmein, Tenasserim, Burma [= c. 161 km south of Mawlamyine, Mon, Myanmar; ca. 16.21°N, 97.74°E].
A small-sized Tamiops [average HB = 107–114 mm (T. b. inconstans/T. b. barbei), W = 47 g, GLS = 32 mm;
In general terms, T. barbei is distinguished from its parapatric relative T. mcclellandii by its more colorful venter and paler tipped tail hairs, and at the turnover area between these species (west and central Indochina), by its strongly striped appearance and longer tail (Figs
Allopatric T. b. inconstans and T. mcclellandii can be externally distinguished based on less pelage features: venter gray hair bases are short and entirely covered by the colored hair tips vs venter gray hair bases are long and not entirely covered by colored hair tips in T. mcclellandii, giving T. b. inconstans a homogeneous bright orange ventral coloration vs yellow-buff mixed with gray/brown in T. mcclellandii; buff/pale yellow vs golden/yellow tipped tail hairs in T. mcclellandii.
It can also be distinguished from T. mcclellandii by its longer (106–163 mm) vs shorter (75–113 mm) tail in their distribution contact area (west and central Indochina; Fig. S2A). Similarly, cranium morphospace is also more distinct between parapatric T. b. barbei and T. mcclellandii, than between allopatric T. b. inconstans and T. mcclellandii (Figs
Finally, T. b. barbei can also be differentiated from T. mcclellandii through the following baculum characteristics: Presence vs absence of a small concavity where the blade is attached to shaft in T. mcclellandii; blade attachment orientation is perpendicular vs tangent to shaft orientation in T. mcclellandii; shorter (4.70–5.09 mm) vs longer (6.15–6.65 mm) shaft in T. mcclellandii (Fig.
It is currently thought to have an allopatric distribution with its relatives Tamiops maritimus, T. mishanica and T. swinhoei (although T. barbei inconstans might have a sympatric/parapatric elevational distribution with T. swinhoei/maritimus in Yunnan and northern Vietnam) from which it can be externally distinguished based on its outer pair of light stripes, which are connected to the light facial stripe in T. barbei barbei (except in some T. barbei inconstans specimens), but just extend to the shoulder in the other species (except in T. swinhoei in which it is rarely connected with a faint line). Its pelage is also harsher, thinner, and shorter vs softer, denser and longer in T. swinhoei, and it lacks a yellow/orange hue in its ear tufts and reddish suffusion in crown while these features are frequently present in T. swinhoei. Its facial stripe is distinctive vs diffuse in T. minshanica, and its crown is characterized by a dull brown gray vs bright reddish-brown coloration in T. mishanica. It can be differentiated from parapatric T. rodolphii based on the following external features: outer light lines are thinner but more distinctive, contrasted and lighter than inner light lines, which are less conspicuous vs outer and inner light lines are of equal width and similar brightness, distinctiveness, and contrast with the dorsum in T. rodolphii; outer dark lines’ coloration is homogeneous along the anterior-posterior axis vs outer dark lines generally grade posterior-anteriorly from black/dark brown to brown/reddish-brown in T. rodolphii; absence of a thin pale brown line across the black mid-dorsal line vs presence of a thin pale brown line across the black mid-dorsal line in T. rodolphii (except in SE Thailand populations).
Finally, the glandes penis and bacula among T. minshanica, T. swinhoei, T. maritimus, T. barbei barbei, and T. barbei inconstans differ distinctly from each other (
Distributed from the Irrawaddy River to the West to the Northwest provinces of Vietnam to the East (A. E. Balakirev pers. comm.), southern Yunnan (China) ca. 23.5º N to the North, and to Selangor (Malaysia) to the South (Figs
Recorded feeding on cherry blossom flowers/nectar, Mudhuca floribunda, Ficus hirta, Musa acuminata, and Castanopsis acuminatissima (iNaturalist;
Recorded in Khao Sok, Khao Yai, Ko Tarutao, Thai Muang, Kaeng Krachan, Khoa Luang, Phu Suan Sai, Phu Kradueng, Thale Ban, Khao Pu-Khao Ya, Mae Ping, Si Satchanalai and Doi Luang, Doi Inthanon National Parks, Lentang Forest Reserve, Fraser’s Hill and Krau Wildlife Reserves, Chiang Dao, Phu Luang, and Huai Kha Khaeng Wildlife Sanctuaries (iNaturalist; Table S1).
The subspecies Tamiops barbei inconstans might merit species-level recognition. It is well differentiated from T. barbei barbei populations based on mitochondrial DNA, having divergerged ca. 3.54 million years ago with cyt b pairwise uncorrected genetic distances ca. 5% (
In T. barbei barbei, morphological sampling in Kra sensu lato complemented and supported the limited molecular evidence in this area of
The recognition of two additional species of Asian tree squirrels (Callosciurinae) illuminates the amount of taxonomic work remaining in many understudied genera in this subfamily. Taxonomic instability seems not only rampant in Tamiops (
This research supports an integrative future for Sciuridae species delimitation (
The examination of museum specimens and citizen science pictures supported the clear distinction between these two species pairs and their homogeneity across vast areas of Southeast Asia, indicating that they are independent evolutionary lineages. Despite possible limited introgression in a small contact zone between C. caniceps–C. concolor (Fig.
Squirrel species and subspecies were historically described based on pelage characters, but this and additional ongoing research suggests that many of such species have been lost in synonymy during the last decades. The data presented here, along with other integrative taxonomic revisions (
The use of baculum variation for species delimitation in squirrels is not novel.
Ecological and behavioral divergences, and the resulting morphological differentiation, seem to be consequences rather than initial drivers of speciation, yet they may further contribute to the isolation process (
Two major mammal species distribution transitions have been described in the boundary between Sundaland and Indochina: the IoK and the Kanggar Pattani Line (
Remarkably, on the western side of the NSTR, the transition seems to be further south, in Trang, for both C. caniceps–C. concolor, and many other taxa (e.g., R. affinis: Lay Hong Son, 7.84, 99.48; Maxomys whiteheadi and M. rajah: Trang; Sundasciurus hippurus: Trang-Krabi border; Tupaia belangeri vs Tupaia glis: Ko Lanta, 7.58, 99.07 vs Trang, Khao Sai Dao, 7.35, 99.85;
However, other non-commensal taxa break this pattern, with their northern or southern distribution limits at different latitudes. These include Callosciurus nigrovittatus, Pithecheir parvus, Niviventer cremoriventer, Sundamys annandalei, Sundamys muelleri, and Hylomys maxi (
This research underscores the important role of topography in the diversification of tropical east Asia’s fauna (
Our study taxa, C. caniceps–C. concolor and T. barbei barbei, followed a Bergmannian size pattern in the PCA, with higher latitude Indochinese populations/species exhibiting a larger size than Sundaic ones (
We extend our gratitude to R. Voss, E. Hoeger, M. Surovy, M. Omura, M. Mullon, L. Heaney, A. Ferguson, L. Smith, D. Lunde, I. Rochon, M. Viera, P. Jenkins and R. Portela for their assistance with specimens housed at AMNH, MCZ, FMNH, USNM, and NHMUK. We also acknowledge the contributions of various historic collectors, listed in the Supporting Information, Table S1, whose efforts made available the specimens of this study. We gratefully acknowledge Larry Heaney for providing invaluable training to A. H. during the data collection phase. Larry Heaney and Darrin Lunde additionally offered important feedback on the initial draft of this manuscript. We would also like to sincerely thank the following individuals for their invaluable contributions: Alexander Balakirev, and an anonymous reviewer for their comments and suggestions, which improved the quality of this manuscript; Teresa Hsu and Jennifer J. Hill for μCT scanning the bacula and/or providing advice on visualization and segmentation software; Paula Jenkins, Roberto Portela, and Uttam Saikia for providing information/pictures of type specimens housed at NHMUK and ZSI; Boonkhaw Phadet for assistance with field audio recordings at Dong Phaya Yen WRS; Pipat Soisook for helping with local names; and Natthaphat Chotjuckdikul, Pattaraporn Vangtal, Cheong Weng Chun, Lee Alloway, Andaman Kaosung, and Katie Sayers for providing pictures of live/USNM hybrid specimens that have been used in figures; iNaturalist, Observation, and the citizen scientists listed in Table S2 for their pictures and records.
A. H. was supported by a Ministerio de Economía y Competitividad contract CGL2014-58793-P, and a “Margarita Salas” postdoctoral grant funded by the Ministerio de Universidades de España and the European Union “NextGenerationEU”. A. H. was also supported by an Ernst Mayr Travel grant funded by Harvard’s Museum of Comparative Zoology, AMNH Collection Study Grant, and a SYNTHESYS Project financed by European Community Research Infrastructure Action under the FP7 “Capacities” Program. The project was supported by the Spanish Ministry of Science and Innovation grant PID2023-152577NB-I00. This research did not require any permits.
Figures S1–S5
Data type: .zip
Explanation notes: Figure S1 Callosciurus caniceps and C. concolor bivariate plots of craniodental and selected external measurements. — Figure S2 Tamiops mcclellandii and T. barbei bivariate plots of craniodental and selected external measurements. — Figure S3 Distribution map and potential hybrid zone between Callosciurus caniceps and C. concolor, derived from museum specimens and verified citizen science records. — Figure S4 Comparison of Callosciurus caniceps, C. concolor, and potential hybrid specimens from the contact zone in southern Peninsular Thailand. Specimens are displayed in the following order from top to bottom: USNM355628 (C. concolor, Nathawi, Songkhla), USNM535161 (potential hybrid, Lan Saka, Nakhon Si Thammarat), USNM355080 (potential hybrid, Ban Tah Pae, Chawang, Nakhon Si Thammarat), USNM355078 (potential hybrid, Doi Kaeo, Chawang, Nakhon Si Thammarat), USNM256872 (potential hybrid, Tha Lo, Bandon [Surat Thani]), USNM256871 (C. caniceps bimaculatus, Tha Lo, Bandon [Surat Thani]). — Figure S5 Distribution map of Tamiops barbei and T. mcclellandii, derived from museum specimens and verified citizen science records.
Tables S1–S4
Data type: .zip
Explanation notes: Table S1 Specimens included in this study and associated information. — Table S2 Citizen science records. — Table S3 Craniodental and selected external measurements. — Table S4 Mating call data for Callosciurus caniceps.
File S1
Data type: .docx
Explanation notes: File S1 – Part A (Morphometrics): Table S5A, B PCA results for Callosciurus caniceps and Callosciurus concolor; Table S6A Craniodental and selected external measurements (mm), weight (g) of adult Callosciurus caniceps and Callosciurus concolor. The dwarf Callosciurus caniceps population of Koh Tao island and potential hybrids are shown separately for the sake of comparison. Mean, standard deviation (±), ranges and sample size (n) are specified for each measurement; Table S6B Univariate normality assumption check; Table S6C Homogeneity of variance check; Table S6D Welch Two Sample t-test; Table S6E Wilcoxon rank sum exact test; Table S7A PCA results for Tamiops barbei and T. mcclellandii; Table S7B Variable contribution to variance; Table S8A Craniodental and selected external measurements (mm), weight (g) of adult Tamiops mcclellandii and Tamiops barbei. Mean, standard deviation (±), ranges and sample size (n) are specified for each measurement; Table S8B Tamiops: Sex dimorphism analysis; Table S8C Univariate normality assumption check; Table S8D Homogeneity of variance check; Table S8E Welch Two Sample t-test; Table S8F Wilcoxon rank sum exact test. — Part B (Bioacoustics): A Mating call sonograms of Callosciurus spp; B Mating call PCA results; variable contribution to variance.