Research Article |
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Corresponding author: M. Alejandra Camacho ( macamachom@puce.edu.ec ) Academic editor: Clara Stefen
© 2026 M. Alejandra Camacho, Santiago F. Burneo, Daniel Cadar, Balázs Horváth, Gábor E. Tóth, Jerome Murienne.
This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
Citation:
Camacho MA, Burneo SF, Cadar D, Horváth B, Tóth GE, Murienne J (2026) Geographic structuring and species limits in Phylloderma stenops (Chiroptera: Phyllostomidae): Revalidation of P. septentrionalis in Central America. Vertebrate Zoology 76: 339-359. https://doi.org/10.3897/vz.76.e166549
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Abstract
We investigated the taxonomic diversity of the pale-faced bat Phylloderma stenops (Chiroptera: Phyllostomidae) across South and Central America using morphological analyses and complete mitochondrial genomes. Phylogenetic reconstructions revealed two highly supported clades, with Central American populations showing consistent genetic divergence from South American lineages. Morphological comparisons corroborated this distinction, particularly in cranial and dental traits, supporting the recognition of the northern lineage as Phylloderma septentrionalis Goodwin, 1940. Our results indicate that P. septentrionalis represents a valid species restricted to northern Central America, while P. stenops sensu stricto is distributed from Panama southwards. The genome skimming approach proved effective for recovering complete mitogenomes from both recent and historical specimens, enabling robust phylogenetic inference despite limited sample sizes. These findings are consistent with the hypothesis that geographic features in Central America may have contributed to lineage divergence within Phylloderma, although the exact barrier and transition zone remain to be evaluated with samples from Costa Rica. The results also underscore the importance of integrating morphological and molecular data to reassess taxonomic limits in poorly sampled Neotropical bats. The recognition of P. septentrionalis refines the taxonomy and geographic limits of Phylloderma in Central America and provides a framework for future studies using broader geographic sampling and genomic data.
Biogeographic barriers, evolutionary diversification, genome skimming, integrative taxonomy, mitochondrial genomes, Phyllostominae, species delimitation
The Neotropical region encompasses diverse ecosystems and is home to exceptional biodiversity. Within this region, Central America, which contains the Mesoamerican Biodiversity Hotspot (
The diversity and high endemism of Central America have been attributed to a complex biogeographical history resulting from geological transformations that have created barriers to dispersal, such as high elevations and topographic depressions (
The bat family Phyllostomidae, which is restricted to the tropics and subtropics of the New World, represents the most diverse chiropteran group of the Neotropical Region. It currently includes 61 genera and 230 species occupying a very wide range of habitats (
Phylloderma has historically been treated as a monotypic genus within Phyllostominae. Known as the pale-faced bat, P. stenops (Peters, 1865) has a wide distribution in the Neotropics, adapting to various forest habitats; however, its ecological role, behavioral patterns, morphological and genetic diversity have not been fully studied (
Recent morphological and molecular studies have revealed unrecognized diversity often structured geographically, underscoring the need for systematic reassessment of widespread taxa (
Species delimitation in bats has traditionally relied on mitochondrial markers such as cytochrome b (cyt b) and cytochrome oxidase I (COI), which offer rapid and cost-effective insights into genetic divergence (
In recent years, mitogenome skimming, a low-coverage sequencing aimed at recovering complete mitochondrial genomes, has emerged as an alternative that can improve phylogenetic resolution relative to single-gene approaches. Although still less commonly applied in bat taxonomy, mitogenomes can provide enhanced resolution and support in groups with subtle morphological divergence (
This study investigates phylogenetic relationships and taxonomic uncertainties in Phylloderma by integrating morphology and complete mitochondrial genomes. Morphological analyses focused on craniodental traits, and phylogenetic reconstructions were based on mitogenomic datasets obtained from low-coverage sequencing approaches (
Using this framework, we combine craniodental morphology with mitogenome skimming to assess diversity and taxonomic uncertainty in Phylloderma, a genus with contrasting morphological and genetic patterns, and discuss its implications for bat taxonomy in Central America. We discuss geographic and geological features of Central America as a biogeographic context for interpreting the observed mitogenomic divergence in this genus, while recognizing that their role was not directly tested in this study.
We included samples from most of the geographical distribution of Phylloderma stenops in South and Central America (Fig.
Geographic localities of Phylloderma specimens analyzed in this study. Circles represent specimens measured for morphological analyses, squares represent sequenced specimens, and diamonds represent specimens that were both measured and sequenced. Detailed locality information is provided in Table SS1.
For the morphometric analyses, we examined 58 specimens of Phylloderma from the following collections:
We obtained tissue samples from 18 Phylloderma specimens that are housed at
Lastly, we included published information of locality data and measurements, listed in
We gathered a set of 18 tissue samples from Phylloderma (Table
Specimens, localities, and mitogenomic data used in this study. List of specimens used in the present study, including voucher identification, GenBank accession numbers, mitogenome characteristics, country, and geographic coordinates.
| Museum number | Species ID | GenBank accession number | Mitogenome mean coverage | Mitogenome length | Country | Latitude & Longitude |
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P. s. septentrionalis | PZ428432 | 127.47 | 16557 | Honduras | 14°5.55'N, 87°12.04'W |
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P. s. septentrionalis | PZ428433 | 24.39 | 16557 | Honduras | 14°18.00'N, 87°50.00'W |
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P. s. stenops | PV933985 | 8.34 | 16609 | Trinidad and Tobago | 10°38.25'N, 61°16.93'W |
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P. s. stenops | PV946934 | 9.17 | 16563 | French Guiana | 5°17.00'N, 52°55.00'W |
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P. s. stenops | PV946935 | 142.23 | 16623 | Peru | 12°40.10'S, 71°16.14'W |
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P. s. stenops | PP461486 | 226.13 | 16601 | Ecuador | 1°0.47'S, 76°11.18'W |
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P. s. stenops | PV946936 | 281.51 | 16653 | Panama | 9°4.46'N, 79°39.59'W |
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P. s. stenops | PV946937 | 607.41 | 16633 | Guyana | 4°39.64'N, 58°40.84'W |
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P. s. stenops | PV946938 | 528.52 | 16616 | Guyana | 4°17.00'N, 58°31.00'W |
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P. s. stenops | PV946939 | 199.94 | 16602 | Guyana | 6°29.94'N, 58°13.12'W |
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P. s. stenops | PV946940 | 215.72 | 16690 | Suriname | 4°44.44'N, 56°48.10'W |
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P. s. stenops | PV976855 | 276.36 | 16604 | Suriname | 1°59.67'N, 56°5.53'W |
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P. s. stenops | PV976856 | 55.02 | 16598 | Suriname | 5°6.21'N, 54°30.99'W |
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P. s. stenops | PV976857 | 10.77 | 16590 | Peru | 5°26.10'S, 79°48.17'W |
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P. s. stenops | PV976858 | 143.38 | 16607 | Guyana | 7°31.00'N, 59°23.00'W |
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G. crenulata | PV976859 | 213.03 | 16580 | Ecuador | 0°59.79'S, 76°12.21'W |
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T. bakeri | PV976860 | 14.19 | 16634 | Ecuador | 0°10.02'N, 78°53.28'W |
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V. spectrum | PV976861 | 63.66 | 16674 | Ecuador | 1°3.80'S, 76°12.77'W |
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C. auritus | PV976862 | 56.17 | 16779 | Ecuador | 4°22.11'S, 79°53.97'W |
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T. cirrhosus | PP410143 | 83 | 16579 | Ecuador | 0°55.51'S, 79°45.68'W |
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M. macrophyllum | PP461487 | 17.21 | 16785 | Ecuador | 0°0.58'S, 76°10.90'W |
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P. discolor | ON357733 | 3482 | 16692 | Ecuador | 0°1.81'S, 78°40.84'W |
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L. nicaraguae | ON310506 | 5931 | 16653 | Ecuador | 0°16.26'S, 79°8.59'W |
| MVZ-185587 | L. aurita | KU743908 | 1192.5 | 16661 | Brazil | 6°42.85'S, 35°10.98'W |
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G. soricina | ON321893 | 3055 | 16529 | Ecuador | 0°50.78'S, 79°11.48'W |
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L. robusta | ON357721 | 6901 | 16666 | Ecuador | 0°54.70'S, 79°12.44'W |
Complete mitochondrial genome sequencing and assembly was performed using a genome skimming procedure, as recently performed for other Phyllostomidae groups (
Raw reads were first subjected to a qualitative assessment, followed by the removal of adaptor sequences and the filtration of polyclonal and low-quality reads (<55 bases long) using CLC Genomics Workbench 24 (Qiagen; https://digitalinsights.qiagen.com). Overlapping paired-end (PE) reads were merged to improve quality, while non-overlapping pairs and orphan reads were left unchanged. Deduplication was performed with an assumed 100% identity using BBTools v.39.27 (
Ribosomal RNA (rRNA) and transfer RNA (tRNA) loci were aligned using MUSCLE (
Maximum likelihood phylogeny of Phylloderma based on complete mitochondrial genomes inferred with RAxML-NG under a partitioned GTR+I+G model. Node labels indicate Felsenstein bootstrap support and transfer bootstrap expectation shown as percentages (FBP/TBE). Values ≥ 75% were considered to indicate robust support. The scale bar represents substitutions per site.
To root the phylogenetic analysis and ensure broad taxonomic representation, we selected outgroups that included at least one representative of each genus within the subfamily Phyllostominae (except Mimon, for which no complete mitochondrial genome was available), as well as one representative from the subfamilies Lonchophyllinae and Glossophaginae (Table
We examined 58 Phylloderma specimens to obtain external and craniodental measurements. Only fully mature individuals were included, ensuring consistency by excluding subadult stages (
For each specimen, 26 metrics were recorded, including 16 craniomandibular and 10 external measurements. Total length (TL), tail length (T), hind foot (HF), ear length (E), and mass (W) were obtained from specimen tags when available. The measurements were taken by a single observer (M.A.C.) across all museum visits with a digital caliper (0.01 mm precision) and following a standardized protocol (measurement landmarks and orientation kept constant) to minimize observer-related variance. The measurements of P. stenops boliviensis specimens from the
We adopted the cranial and dental terminology proposed by
The external and craniomandibular measurements, and their abbreviations and descriptions are as follows: calcar length (CL), distance from the joint with the ankle to the tip of the calcar; ear length (E), distance from the inter-tragic notch of the ear to its tip; forearm length (FA), distance from the elbow (external edge of the olecranon process) to the wrist (including the carpals); hindfoot length (HF), distance from the ankle to the tip of the claws; metacarpal III (MET-III), distance from the joint to the wrist (carpal bones) with the 3rd metacarpal to the metacarpophalangeal joint of the 3rd digit; metacarpal IV (MET-IV), distance from the joint of the wrist (carpal bones) and the 4th metacarpal to the metacarpophalangeal joint of the 4th digit; metacarpal V (MET-V), distance from the joint of the wrist (carpal bones) and the 5th metacarpal to the metacarpophalangeal joint of the 5th digit; tail length (T), distance from the base of the tail to its tip; tibia length (TiL), distance from the proximal end of the tibia to the distal base of the calcar; total length (TL), head and body length excluding tail; weight (W), body mass in grams; braincase height (BCH), height of the braincase, posteriorly to the auditory bullae, from the basioccipital bone to the sagittal crest; breadth across upper molars (M2-M2), greatest breadth of the palate across the labial margins of the alveoli of M2s; breadth of brain case (BB), greatest breadth of the globular part of the braincase, excluding the mastoid and paraoccipital processes; condylocanine length (CCL), distance from the occipital condyles to the anterior border of the upper canines; condyloincisive length (CIL), distance between a line connecting the posteriormost margins of the occipital condyles and the anteriormost edge of the upper incisors; coronoid height (COH), perpendicular height from the ventral margin of the mandible to the tip of the coronoid process; dentary length (DENL), distance from the midpoint of the condyle to the anteriormost point of the dentary; greatest length of skull (GLS), distance from the occiput to the anteriormost edge of the premaxilla (including the incisors); mandibular toothrow length (MANDL), distance from the anteriormost edge of the lower canine to the posteriormost edge of m3; mastoid (process) breadth (MPW), greatest breadth across the skull, including the mastoid processes; maxillary toothrow (MTRL), distance from the anteriormost edge of the upper canine to the posteriormost edge of the crown of M3; molariform toothrow (MLTRL), distance from the anteriormost edge of P3 to the posteriormost edge of the crown of M3; palatal width at canines (C-C), distance between the outermost edges of the cinguli of upper canines; palatal length (PL), distance from the posterior palatal notch to the anteriormost edge of the incisive alveoli; postorbital constriction breadth (PB), least breadth at the postorbital constriction; zygomatic breadth (ZB), greatest breadth across the zygomatic arches.
Descriptive statistics (mean, range and standard deviation) were calculated for all measurements. Only craniomandibular metrics were used in statistical analyses. Missing measurements represented 3% of the morphometric dataset and were estimated using multiple imputation in the SPSS Statistics v. 20 software (
Finally, to evaluate whether morphometric differentiation reflected proportional cranial differences rather than only overall size, we calculated Mosimann size-adjusted variables as the natural logarithm of each measurement minus the individual mean of all log-transformed measurements. A principal component analysis was then performed on these Mosimann variables in R (
We successfully sequenced 15 Phylloderma mitogenomes (Table SS1). The phylogenetic analysis recovered two highly supported clades: one containing individuals distributed from Panama to South America, corresponding to P. stenops (Clade 1; Fig.
Estimates of evolutionary divergence between taxa. Values represent the mean number of base differences per site averaged over all sequence pairs between groups and are reported as percentages. Among-site rate heterogeneity was modeled using gamma distribution. Distances are based on complete mitochondrial genomes.
| Species | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | |
| 1 | M. macrophyllum | ||||||||||||
| 2 | Trachops cirrhosus | 18.12 | |||||||||||
| 3 | Phylloderma stenops | 19.38 | 18.76 | ||||||||||
| 4 | P. septentrionalis | 19.52 | 18.70 | 8.60 | |||||||||
| 5 | Phyllostomus discolor | 18.23 | 17.20 | 15.26 | 15.21 | ||||||||
| 6 | Gardnerycteris crenulata | 18.10 | 17.06 | 16.47 | 16.51 | 14.53 | |||||||
| 7 | Tonatia bakeri | 18.23 | 17.04 | 16.61 | 16.59 | 15.20 | 15.86 | ||||||
| 8 | Lophostoma nicaraguae | 17.82 | 16.93 | 16.49 | 16.53 | 15.02 | 15.50 | 15.53 | |||||
| 9 | Vampyrum spectrum | 19.52 | 19.64 | 18.42 | 18.53 | 17.59 | 18.47 | 17.77 | 17.82 | ||||
| 10 | Chrotopterus auritus | 20.56 | 20.39 | 19.59 | 19.70 | 18.89 | 19.84 | 19.71 | 18.98 | 16.31 | |||
| 11 | Lonchorhina aurita | 18.94 | 18.09 | 18.78 | 19.19 | 17.77 | 17.89 | 17.56 | 17.67 | 18.71 | 20.04 | ||
| 12 | Glossophaga soricina | 19.01 | 18.06 | 20.18 | 20.43 | 18.34 | 18.42 | 18.40 | 18.11 | 20.29 | 21.15 | 18.80 | |
| 13 | Lonchophylla robusta | 19.83 | 18.88 | 18.94 | 18.94 | 17.82 | 18.41 | 18.23 | 17.87 | 17.72 | 19.46 | 18.27 | 18.72 |
Phylloderma septentrionalis is larger in craniomandibular and external measurements than P. s. stenops and P. s. boliviensis (Table
Descriptive measurements (in mm) for Phylloderma septentrionalis, P. stenops stenops, and P. stenops boliviensis analyzed in this study. Values include arithmetic mean, range (minimum–maximum), and standard deviation (in parentheses). Measurements for P. s. boliviensis correspond to the two type series specimens
| Measurement | P. septentrionalis | P. s. stenops | P. s. boliviensis |
| (n = 6) | (n = 50) | (n = 2) | |
| Breadth of brain case (BB) | 13.80, 13.57–13.97 (0.18) | 12.96, 12.19–13.67 (0.35) | 12.78; 13.22 |
| Palatal width at canines (C-C) | 6.97, 6.77–7.09 (0.13) | 6.40, 5.87–7.13 (0.36) | 6.32; 6.19 |
| Condylocanine length (CCL) | 29.32, 29.08–29.64 (0.19) | 26.98, 24.93–29.06 (1.10) | 27.01; 27.01 |
| Condyloincisive length (CIL) | 30.62, 30.47–30.88 (0.2) | 28.24, 26.09–30.34 (1.14) | 28.8; 27.3 |
| Coronoid height (COH) | 8.66, 8.55–8.79 (0.09) | 8.02, 7.07–9.19 (0.53) | 8.67; 8.48 |
| Dentary length (DENL) | 22.04, 21.59–22.39 (0.29) | 20.14, 18.31–21.83 (0.95) | 19.97; 20.34 |
| Greatest length of skull (GLS) | 34.55, 34.13–35.3 (0.50) | 31.60, 29.64–33.81 (1.08) | 30.95; 31.33 |
| Breadth across upper molars (M2-M2) | 10.66, 10.4–10.82 (0.15) | 9.75, 8.66–10.74 (0.51) | 9.63; 9.28 |
| Mandibular toothrow length (MANDL) | 12.2, 11.67–13.63 (0.72) | 11.28, 10.4–11.96 (0.41) | 11.54; 11.45 |
| Molariform toothrow (MLTRL) | 6.93, 6.8–7.07 (0.11) | 6.63, 6.18–7.1 (0.23) | 8.32; 8.26 |
| Mastoid (process) breadth (MPW) | 15.83, 15.77–15.98 (0.10) | 14.11, 13.09–15.78 (0.56) | 14.52; 14.35 |
| Maxillary toothrow (MTRL) | 11.31, 10.91–12.73 (0.7) | 10.34, 9.5–11.04 (0.39) | 10.56; 10.17 |
| Postorbital constriction breadth (PB) | 9.50, 9.29–9.73 (0.20) | 8.97, 8.3–9.47 (0.26) | 8.68; 8.77 |
| Palatal length (PL) | 15.11, 14.99–15.29 (0.16) | 13.60, 12.05–15.18 (0.77) | 13.37; 13.76 |
| Zygomatic breadth (ZB) | 17.32, 16.73–17.69 (0.34) | 15.52, 14.21–16.85 (0.69) | 15.25; 15.9 |
| Braincase height (BCH) | 11.96, 11.56–12.54 (0.42) | 11.31, 10.11–13.56 (0.57) | 12.83; 13.51 |
| Calcar length (CL) | 18.25 | 14.44, 11.05–17.73 (1.60) | 14.14; 13.08 |
| Forearm length (FA) | 76.28, 65.43–81.64 (5.59) | 71.37, 63.72–77.77 (3.20) | 73.2; 73.2 |
| Hindfoot length (HF) | 20.07, 11.4–23 (4.31) | 19.25, 14–23 (2.15) | 20.12; 18.04 |
| Metacarpal III (MET-III) | 77.53, 73.06–81.6 (3.53) | 67.32, 61.7–73.8 (2.96) | 65.34; 66.81 |
| Metacarpal IV (MET-IV) | 76.21, 72.63–80.33 (3.17) | 66.62, 58.73–72.96 (3.18) | 64.88; 65.42 |
| Metacarpal V (MET-V) | 79.08, 75.17–83.05 (3.45) | 69.17, 63.28–76.76 (3.22) | 66.72; 67.83 |
| Tibia length (TiL) | 31.08, 29.5–32.73 (1.62) | 29.02, 25.83–33.3 (4.40) | 29.62; 28.46 |
| Tail length (T) | 16.88, 11.49–21 (4.45) | 18.65, 7.44–25 (3.9) | 14.65; 15.15 |
| Total length (TL) | 114.10, 109.6–130 (8.05) | 112.34, 81–128 (10.37) | 140; 140 |
| Ear length (E) | 26.69, 22.11–31 (3.36) | 26.24, 15–32 (2.98) | 21.7; 23.2 |
Independent-samples comparisons between Phylloderma septentrionalis and P. stenops based on 16 log10-transformed craniomandibular measurements. Values are mean ± SD. Statistical results correspond to Welch’s t-tests used for all variables due to unbalanced sample sizes. Significant P-values (α = 0.05) are indicated.
| Trait | P. stenops mean ± SD (n = 50) | P. septentrionalis mean ± SD (n = 6) | Test statistic | df | P-value | Significant? (α = 0.05) |
| BB | 1.1126 ± 0.01172 | 1.1339 ± 0.01196 | t = –4.138 | 6.210 | 0.006 | Yes |
| CC | 0.8057 ± 0.02411 | 0.8541 ± 0.02707 | t = –4.178 | 5.992 | 0.006 | Yes |
| CCL | 1.4305 ± 0.01754 | 1.4732 ± 0.01318 | t = –7.212 | 7.317 | < 0.001 | Yes |
| CIL | 1.4505 ± 0.01728 | 1.4916 ± 0.01201 | t = –7.499 | 7.742 | < 0.001 | Yes |
| COH | 0.9030 ± 0.02851 | 0.9450 ± 0.01872 | t = –4.854 | 8.105 | 0.001 | Yes |
| DENL | 1.3038 ± 0.02037 | 1.3507 ± 0.01931 | t = –5.590 | 6.412 | 0.001 | Yes |
| GLS | 1.5003 ± 0.01506 | 1.5390 ± 0.00579 | t = –12.160 | 15.366 | < 0.001 | Yes |
| M2M2 | 0.9883 ± 0.02287 | 1.0335 ± 0.01502 | t = –6.532 | 8.104 | < 0.001 | Yes |
| MANDL | 1.0523 ± 0.01558 | 1.0858 ± 0.02484 | t = –3.223 | 5.482 | 0.021 | Yes |
| MLTRL | 0.8215 ± 0.01520 | 0.8552 ± 0.03570 | t = –2.287 | 5.220 | 0.069 | No |
| MPW | 1.1491 ± 0.01713 | 1.1843 ± 0.02706 | t = –3.116 | 5.491 | 0.023 | Yes |
| PB | 0.9534 ± 0.01252 | 0.9761 ± 0.00931 | t = –5.415 | 7.368 | 0.001 | Yes |
| PL | 1.1333 ± 0.02461 | 1.1959 ± 0.01929 | t = –7.269 | 7.117 | < 0.001 | Yes |
| ZB | 1.1900 ± 0.01936 | 1.2401 ± 0.00855 | t = –11.301 | 12.568 | < 0.001 | Yes |
| BCH | 1.0522 ± 0.02209 | 1.0633 ± 0.02508 | t = –1.035 | 5.968 | 0.341 | No |
| MTRL | 1.0144 ± 0.01665 | 1.0530 ± 0.02564 | t = –3.594 | 5.518 | 0.013 | Yes |
The PCA based on Mosimann size-adjusted variables explained 25.14% of the total variance along PC1 and 21.53% along PC2 (Fig.
Our study analyzed phylogenetic relationships and unresolved diversity in Phylloderma using morphological and genetic data, including complete mitochondrial genomes and newly sequenced outgroup sequences. It has already been demonstrated that under adequate analytical conditions, complete mitogenomes prove to be useful for resolving patterns of phylogenetic relationships within Phyllostomidae (
We recognize that species delimitation in the genomic era, particularly under the standards set by the Bat1K initiative (
Our results support the distinctiveness of northern Central American populations historically treated as Phylloderma stenops septentrionalis. This study confirms that this northern lineage is generally larger than P. stenops in both craniomandibular and external measurements, corroborating previous findings (
Two distinct clades were identified, with a complete mitogenome divergence of 8.60% between the Honduran P. septentrionalis and the Panamanian-South American P. stenops. Because this estimate is based on complete mitochondrial genomes, it is not strictly comparable with single-locus distances such as cyt b or COI, but it provides a broader mitochondrial estimate of divergence across multiple genes. The magnitude of this divergence is consistent with values reported among congeneric chiropteran species based on mitochondrial markers, including the 2–11% cyt b range discussed by
The Northern Central American P. septentrionalis is generally larger than the Panamanian-South American form, with considerable size differences in GLS and MET III to MET V. Skull size varies, and even though skull shape is similar in both groups, there are notable dental differences (see Taxonomy Section). Phylloderma stenops boliviensis is intermediate in size between the other taxa. Thus, P. septentrionalis is distinguished by its larger size, diagnostic dental traits, and deep complete mitogenome divergence. Although some morphometric traits exhibit overlapping ranges and the size-adjusted PCA does not show complete morphometric separation, consistent trends in trait means, diagnostic cranial characters, and mitogenomic divergence support species-level differentiation. Based on this evidence, we propose revalidating Phylloderma septentrionalis Goodwin, 1940 as a species-level taxon. We acknowledge, however, that this interpretation is constrained by the limited number of specimens available from Central America and by morphological differences that are not equally marked across all characters. Therefore, we treat the revalidation of P. septentrionalis as a well-supported taxonomic hypothesis that should be further tested with additional material, especially from Costa Rica and adjacent regions, and with complementary genetic analyses using nuclear markers.
While multivariate analyses can summarize patterns of morphological variation, we also emphasize classical taxonomic comparison. We acknowledge the disparity in sample sizes among Phylloderma taxa, which can reduce statistical power (
This taxonomic decision also has direct biogeographic implications. Phylloderma septentrionalis appears to have a distribution restricted to the region between southern Mexico (Oaxaca and Chiapas) and Costa Rica (
To interpret these patterns, geology provides a context. The tectonic and geological history of Central America is known to have influenced bat distribution and speciation (
At a finer scale, the Talamanca Range’s diverse ecological zones shape bat diversity and distribution. Species compositions in Costa Rica and Panama differ from those in the northern transition zone, including Nicaragua (
Our study shows northern Central American (Mexico to Nicaragua) Phylloderma to represent a distinct clade. A critical limitation of this study is the absence of samples from Costa Rica, the region where the Hess Escarpment and the Talamanca Range are most prominent. This gap prevents precise localization of the phylogeographic break and limits our ability to assess which species these populations belong to under our revised taxonomy or even whether they represent an intermediate lineage. Consequently, we treat the role of specific barriers as an informed hypothesis that requires direct sampling across Costa Rica for confirmation.
While our study spans a broad geographic range, we acknowledge that the number of sequenced specimens is modest relative to the spatial scale. However, the use of complete mitochondrial genomes provides high-resolution insights into lineage divergence, and the geographic breadth of our sampling captures key biogeographic transitions. These data allowed us to formulate our species hypothesis based on mitogenomic divergence and spatial structure, but we emphasize that broader sampling and nuclear genomic validation will be essential to confirm species boundaries and assess population-level variation.
Further genetic analysis is needed to clarify the taxonomic status of Costa Rican and Panamanian specimens of Phylloderma. Despite being rare in collections, they are widespread in the Neotropics, thus are ideal for studying geographically structured diversification and hidden lineage boundaries (
Despite the recent uncovering of previously unrecognized species endemic to the region, owing to the limited number of specimens in scientific collections (
To facilitate visualization of diagnostic differences among the Phylloderma taxa treated here, we summarize key qualitative characters and selected external and craniodental measurements in Table
Comparative morphological characters and selected external/craniodental measurements for the taxa treated in this study.
| Character or measurement | Phylloderma septentrionalis | Phylloderma stenops stenops | Phylloderma stenops boliviensis |
| Sample size (morphology) | n = 6 | n = 50 | n = 2 (type series; descriptive only) |
| Total length (TL) | 109.6–130 | 81–128 | 140; 140 |
| Forearm length (FA) | 65.43–81.64 | 63.72–77.77 | 73.2; 73.2 |
| Greatest length of skull (GLS) | 34.13–35.3 | 29.64–33.81 | 30.95; 31.33 |
| Metacarpal III (MET-III) | 73.06–81.6 | 61.7–73.8 | 65.34; 66.81 |
| Metacarpal IV (MET-IV) | 72.63–80.33 | 58.73–72.96 | 64.88; 65.42 |
| Metacarpal V (MET-V) | 75.17–83.05 | 63.28–76.76 | 66.72; 67.83 |
| Ear shape and internal striations | Pointed ears; striations subtle | Rounded ears; marked inner striations | Ears with rounded tips; faint crenulations on edge. |
| Ventral pelage pattern | Underparts distinctly paler; light coloration extends over shoulders/neck sides | Underparts more uniformly colored | Dorsal fur reported with a clearer zone at neck level vs uniform in P. s. stenops |
| Upper inner incisors (I1) | Clearly bilobed | Smooth or weakly bifid cutting edge | Smooth edges, without evident lobulation |
| Lower incisors | Inner lower incisors longer than outer; outer lower incisors smaller, with irregular cutting edges but not evidently bilobed | Inner incisors weakly bilobed or with a visible medial notch | Inner lower incisors longer than outer; weakly bilobed (as in P. septentrionalis) |
| Main cusp of lower p4 | Non-pointed | Pointed | Not evaluated beyond limited material |
| Upper molars: paracone and metacone, stylar shelves | Cusps shallower; metastylar and parastylar shelves reduced | Cusps taller; metastylar and parastylar shelves well developed | Cusps taller; well-developed parastylar shelves protruding from the rest of the molariform cusps in profile view. |
| Overall cranial robustness and rostrum | Skull robust; short rostrum | Skull less massive; rostrum slightly longer and flatter | Descriptive only (n = 2); intermediate size trend noted |
| Geographic distribution | Southern Mexico (Oaxaca, Chiapas) to Nicaragua | Southern Panama (south of Central Cordillera) to South America | Southeastern Bolivia |
Family Phyllostomidae Gray, 1825
Genus Phylloderma Peters, 1865
Phylloderma stenops septentrionalis – Handley (
6 specimens including 6 skins, 6 skulls, 2 complete mitochondrial genomes.
“Las Pilas, six miles north of Marcala, about 4000 feet elevation; Department of La Paz, Honduras, March 26, 1937”.
Phylloderma septentrionalis is distinguished by its larger size (FA 65.4–82.5 mm; GLS 32.7–35.3 mm), pointed ears with subtle striations, and a high, rounded braincase. It differs from P. stenops by the presence of bilobed upper inner incisors, a non-pointed main cusp on the third lower premolar (p4), and shallower upper molar cusps with reduced metastylar and parastylar shelves. The skull is robust, with a short rostrum and complete, rounded zygomatic arches. Externally, the underparts are distinctly paler and extend over the shoulders and neck sides, contrasting with the darker dorsal fur and wing membranes.
Phylloderma septentrionalis is a large and robust species. Reported measurements for this species, including the ranges from this study, are: Total length 109.6–137 mm, forearm length 65.4–82.5 mm; and greatest skull length 32.7–35.3 mm (
The upper inner incisors are bilobed; the upper external incisors are small, without evident lobulation, although the cutting edges are not uniform. The lower external incisors have irregular cutting edges but are not evidently bilobed and somewhat smaller than the internal ones.
The rostrum is shorter than the braincase, with no depression between the orbits. It is also rather wide, giving a robust appearance to the skull. The zygomatic arches are rounded and complete (
Comparative skull and mandible morphology of Phylloderma septentrionalis (left,
The averages of the craniodental and external measurements analyzed in this study were greater for P. septentrionalis than for P. stenops. In the cases of GLS, MET III, MET IV, and METV, the measurements do not overlap and are always greater in the northern Central American species. The skull differs in size, but not in shape, although there are some differences in the teeth worth noting: the upper inner incisors are bilobed in P. septentrionalis, but with smooth or weakly bifid cutting edges in P. stenops (
Phylloderma septentrionalis occurs from southern Mexico (Oaxaca and Chiapas) to Nicaragua, presumably with the Hess Escarpment as the limit of its distribution (Fig.
Geographic distribution of Phylloderma based on examined specimens, mitogenomes, and published records. Circles represent P. septentrionalis and squares represent P. stenops. The inset shows lower Central America and the main montane systems discussed as possible barriers to the observed phylogeographic break: 1) Guanacaste Cordillera, 2) Central Cordillera of Costa Rica, and 3) Talamanca Cordillera. In the absence of Costa Rican specimens, the precise location of the transition between both taxa remains unresolved.
This species consumes fruits, other plant materials, and insects (
The International Union for Conservation of Nature (IUCN) currently classifies Phylloderma stenops as ‘Least Concern’, but P. septentrionalis has not been assessed separately. However, the Mesoamerican taxon (formerly Phylloderma s. septentrionalis) is listed as “Threatened” within the Conservation Initiatives for the Mammals of Oaxaca, Mexico (
Ph[yllostoma] (Phylloderma) stenops Peters, 1865: 513.
G[uandira] cayanensis Gray, 1866: 114
Phylloderma stenops – Dobson, (1878: 483): recognition of Phylloderma as a genus and invalidation of Guandira cayanensis
Phylloderma septentrionalis (partim) – Goodwin (
Phylloderma stenops – Handley (
Phyllostomus stenops – Baker et al. (
Phylloderma stenops – Timm et al. (
Two subspecies are recognized: Phylloderma stenops stenops and P. s. boliviensis.
52 specimens including 52 skins, 52 skulls, 13 complete mitochondrial genomes.
Adult, probably male, skin with skull removed (RNH 16843), collector and date of capture unknown. The specimen might be in the Rijksmuseum van Natuurlijke Historie, Leiden, Netherlands (
Cayenne, French Guiana (
Phylloderma stenops is characterized by its moderate size within the genus (FA 63.7–81 mm; GLS 29–35.4 mm), rounded ears with marked inner striations, and a flatter facial profile. It differs from P. septentrionalis by the presence of smooth or weakly bilobed upper inner incisors, a pointed main cusp on the third lower premolar (p4), and taller upper molar cusps with more developed metastylar and parastylar shelves. The skull is less massive, with a slightly longer and flatter rostrum. Externally, the underparts are uniformly colored.
Phylloderma stenops can be characterized as a large and robust bat. Reported measurements for this species, including the ranges from this study, are total length 80–128 mm; forearm length 63.7–81 mm; and greatest skull length 29–35.42 mm (
The upper inner incisors are relatively long compared to the external ones, with smooth or weakly bifid cutting edges, and usually converging distally. The upper external incisors are bilobed and slightly less than half the size of the internal ones.
The braincase is relatively high and rounded. The rostrum is shorter than the braincase and has a dorsal profile that is not convex and does not have a depression between the orbits. The zygomatic arches are rounded and complete.
The diploid number is 32, and the fundamental number is 58 (
All craniodental and external measurements average smaller in P. stenops than in P. septentrionalis, with overlapping ranges except for GLS, MET III, MET IV, and MET V. The skull differs in size but not in shape. The upper inner incisors have smooth or weakly bifid cutting edges in P. stenops, as opposed to being clearly bifid in P. septentrionalis. The main cusp of the third lower premolar (p4) is more pointed in P. stenops than in P. septentrionalis. The metacones and paracones are not as deep, and the metastylar and parastylar shelves are relatively shorter in P. septentrionalis than in P. stenops. The ears of P. stenops are rounded with distinct marginal striations on the inner surface, whereas in P. septentrionalis the ears are more pointed with less visible striations (
A comparison of the two South American subspecies reveals that P. s. boliviensis is larger than P. s. stenops, although this conclusion is based on the only two specimens reported to date. The lower incisors of P. s. stenops are even and unlobed, whereas in P. s. boliviensis the middle incisors are longer than the outer ones and weakly bilobed (as in P. septentrionalis). The dorsal fur of P. s. stenops is distributed uniformly, whereas in P. s. boliviensis there is a clearer zone at the level of the neck (
The species is distributed from the south of the Central Cordillera in Panama to South America, including the Guianas, Venezuela, Trinidad and Tobago, Colombia, Ecuador, Peru, Bolivia, and Brazil (Fig.
There is limited knowledge regarding the natural history of the genus Phylloderma. Apparently, P. stenops is omnivorous. Its diet consists primarily of fruits of the families Annonaceae, Cucurbitaceae, Myrtaceae, and Cecropiaceae; and has been documented consuming adult insects, insect larvae, and pupae from an active nest of a social wasp (
Accurate taxonomic classification is vital for biogeography, ecology, and conservation, forming the basis for biodiversity protection. Precise species identification helps to understand biodiversity, identify hotspots, and prioritize conservation. In biodiverse regions like Central America, documenting hidden evolutionary diversity is challenging due to complex ecosystems, requiring multidisciplinary approaches to delineate species boundaries with precision. By clearly articulating our species concept and delimitation framework, we aimed to reduce taxonomic ambiguity and provide a reproducible model for future studies in morphologically conserved bat lineages.
Although our sample sizes are limited, the mitogenomic divergence observed across broad geographic regions supports the revalidation of P. septentrionalis. This taxonomic hypothesis should be further tested with expanded sampling, especially from Costa Rica and adjacent regions, and with complementary genetic analyses.
Morphological evidence and complete mitochondrial genomes distinguish the northern Central American lineage P. septentrionalis from Panamanian–South American P. stenops. Accordingly, we revalidate Phylloderma septentrionalis Goodwin, 1940, as a species and provide amended taxonomic treatment for Phylloderma stenops Peters, 1865. The >8% complete mitogenome divergence observed between these lineages is substantial and consistent with values reported among several congeneric phyllostomid species. Such divergence, coupled with morphological trends, supports its recognition as a distinct taxon.
The observed genetic divergence in Phylloderma is consistent with a barrier in the Talamanca region, yet the absence of Costa Rican samples means this scenario remains hypothetical. Targeted sampling in Costa Rica is essential to pinpoint the geographic location of the divergence and determine whether intermediate lineages exist.
We recommend further field studies to collect and preserve specimens in local museums, especially in countries with limited collections like El Salvador. Future research should prioritize sampling across Costa Rica, integrating nuclear markers, additional morphological comparison, and ecological niche modeling to refine species limits and test the role of the Talamanca Cordillera and adjacent geological features as possible barriers. Similar efforts are needed in South America for the subspecies P. s. boliviensis, which remains poorly understood owing to the scarcity of specimens. Our study highlights the complex evolutionary histories of Phylloderma, influenced by historical biogeographical and ecological factors, and underscores the need for comprehensive taxonomic and evolutionary studies to protect biodiversity in Central America.
We thank the French Embassy in Ecuador and the Ministry of Europe and Foreign Affairs for supporting the FSPI–Doctoral Schools Project of 2021 and the Agence Nationale de la Recherche; CEBA, ANR-10-LABX-25-01; TULIP, ANR-10-LABX-0041. Special thanks to Marisa Surovy, Darrin Lunde, Nicolás Reyes-Amaya, and Oscar E. Murillo-García for access to natural history collections. We are grateful to Adam Ferguson, Bruce Paterson, Marie L. Campbell, Joseph Cook, Jacqueline Miller, and Burton Lim for providing tissue samples, and Mónica Díaz for morphological data. Thanks to Alexandra Bialonski and Marike Petersen for mtDNA sequencing and assembly. We are also grateful to Patricia Balaresque, Frédéric Delsuc, Alexandre Hassanin, Sergio Solari, and Andrés Merino-Viteri for their comments and suggestions on an early version of this work. Pamela Enríquez provided assistance with organizing sequence data and preparing the GenBank submission tables and Rubén D. Jarrín provided photographic contributions.
Materials examined
Phylloderma stenops (measured)
BOLIVIA – El Beni • 1 ♀ Rio Mattos, Beni Reserve; 14°38.31’S, 66°17.06’W; 190 m; 14 Sep 1987;
BRAZIL – Amazonas • 2 ♂ Manaus; 3°1.83’S, 59°57.60’W; 80 m; 14 Jan 1980;
COLOMBIA – Arauca • 1 ♀ Vereda Caribabare; 6°16.62’N, 71°46.04’W; 285 m; 31 Mar 2015; IAvH-M-10080. – Casanare • 1 ♂ Vereda Piedecuesta; 5°36.00’N, 72°13.00’W; 360 m; 18 May 2001; IAvH-M-7113. – Chocó • 1 ♂ La Italia, Valencia; 4°57.06›N, 76°17.24’W; 925 m; 30 Jul 1985;
ECUADOR – El Oro • 1 ♀ Bosque Petrificado de Puyango; 3°52.77’S, 80°5.57’W; 325 m; 22 Jul 2004;
FRENCH GUIANA – Cayenne • 1 ♀, 1 ♂ Paracou; 5°17.00’N, 52°55.00’W; 40 m; 31 Aug 1993/4 Nov 1994;
GUYANA – Barima-Waini • 1 ♀ Baramita; 7°22.28’N, 60°29.75’W; 142 m; 30 Jan 1999;
PANAMA – Canal Zone • 1 ♂ Barro Colorado Island, Lutz Creek; 9°9.40’N, 79°50.78’W; 160 m; 10 Mar 1976;
PERU – Loreto • 1 ♂ Nuevo San Juan, Galvez River; 5°15.00’S, 73°10.00’W; 120 m; 15 Jun 1998;
VENEZUELA – Amazonas • 1 ♀ Capibara, Brazo Casiquiare; 2°37.20’N, 66°19.20’W; 110 m; 6 Jun 1967;
Phylloderma stenops (sequenced)
GUYANA – Demerara-Mahaica • 1 ♀ Ceiba Biological Station; 6°29.94’N, 58°13.12’W; 20 m; 28 Nov 2000;
PANAMA – Canal Zone • 1 ♀ Parque Nacional Soberanía; 9°4.46’N, 79°39.59’W; 75 m; 24 Feb 1995;
PERU – Madre de Dios • 1 ♂ Madre de Dios, Manu; 12°40.10’S, 71°16.14’W; 425 m; 21 Jun 1905;
SURINAME – Sipaliwini • 1 ♀ Bakhuis; 4°44.44’N, 56°48.10’W; 265 m; 1 Feb 2006;
Phylloderma stenops (both measured and sequenced)
ECUADOR – Orellana • 1 ♀ PN Yasuní; 1°0.47’S, 76°11.18’W; 240 m; 7 Mar 2019;
TRINIDAD AND TOBAGO – Trinidad • 1 ♀ Arima; 10°38.25’N, 61°16.93’W; 60 m; 18 May 1963;
Phylloderma septentrionalis (measured)
BELIZE – Toledo • 1 ♀ Columbia Forest Station; 16°17.73’N, 88°55.23’W; 45 m; 12 Dec 1969;
HONDURAS –– La Paz • 1 ♀ Las Pilas; 14°18.00’N, 87°50.00’W; 1165 m; 23 Mar 1937;
MEXICO – Chiapas • 1 ♂ San Antonio Nuevo Paraíso; 17°9.60’N, 94°21.18’W; 260 m; 21 Feb 2012; ECOAN-MAM S/N.
Phylloderma septentrionalis (both measured and sequenced)
HONDURAS – La Paz • 1 ♀ Las Pilas; 14°18.00’N, 87°50.00’W; 1165 m; 26 Mar 1937;
Chrotopterus auritus (sequenced)
ECUADOR – Loja • 1 ♂ Jorupe; 4°22.11’S, 79°53.97’W; 680 m; 21 Mar 2018;
Gardnerycteris crenulata (sequenced)
ECUADOR – Orellana • 1 ♀ PN Yasuní; 0°59.79’S, 76°12.21’W; 230 m; 16 Mar 2019;
Vampyrum spectrum (sequenced)
ECUADOR – Orellana • 1 ♀ PN Yasuní; 1°3.80’S, 76°12.77’W; 270 m; 24 Nov 2018;
Tonatia bakeri (sequenced)
ECUADOR – Pichincha • 1 ♂ Reserva Mashpi; 0°10.02’N, 78°53.28’W; 875 m; 27 Sep 2019;
Macrophyllum macrophyllum (sequenced)
ECUADOR – Sucumbíos • 1 ♀ RPF Cuyabeno. Cabañas Neotropic; 0°0.58’S, 76°10.90’W; 225 m; 12 Dec 2015;
Table SS1, S2
Data type: .zip
Explanation notes: Table SS1. Voucher specimens used for morphological and molecular analyses across all datasets. The table lists all specimens examined in this study, including museum catalog numbers, species identification, country and locality information, and whether each specimen was measured, included in morphological analyses, sequenced, or yielded as valid sequences. All literature references correspond to previously published records when applicable [.xlsx file]. — File S2. Loadings, eigenvalues, and percentage of variance for the principal components from a PCA of the 16 linear measurements for adult specimens of Phylloderma [.pdf file].