Research Article |
|
Corresponding author: Diego Omar Di Pietro ( dipietro@fcnym.unlp.edu.ar ) Academic editor: Uwe Fritz
© 2026 Diego Omar Di Pietro, Julieta Sánchez, Sebastián Poljak, Leandro Alcalde.
This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
Citation:
Di Pietro DO, Sánchez J, Poljak S, Alcalde L (2026) Morphological and molecular variation reveal cryptic diversity in the racer Philodryas patagoniensis (Girard, 1858) (Squamata: Colubridae). Vertebrate Zoology 76: 93-119. https://doi.org/10.3897/vz.76.e169219
|
We analysed the genetic and morphological variation in Philodryas patagoniensis, a widely distributed South American racer snake. Two well-differentiated haplogroups were identified using mitochondrial gene sequences (12S and 16S) and the nuclear gene c-mos. Genetic divergence between these haplogroups correlates strongly with morphological differences, allowing the recognition of two morphotypes within P. patagoniensis. We integrated genetic and morphological data into a total evidence analysis using parsimony. Our results support the distinction between the two haplogroups/morphotypes, consistent with recognising two species within P. patagoniensis. Accordingly, we re-describe P. patagoniensis, refining its morphological variation and geographical distribution to reflect the observed genetic differentiation, and describe a new species. Morphological characteristics can distinguish the two species, including body measurements, scale patterns, and cranial osteology. The new species differs from P. patagoniensis sensu stricto in traits associated with arboreal habits, which are strongly correlated with the distribution of the two taxa across forested and open habitats in South America. Furthermore, P. patagoniensis sensu stricto has a significant Lycosa spider component in its diet, which is absent in the newly described species.
Biodiversity, Dipsadinae, Philodryadini, Serpentes, South America, systematics, taxonomy
Dipsadinae constitutes the most diverse group of snakes worldwide, comprising 112 genera and 853 species, nearly half of the diversity within Colubridae and 20% of all recognised species of Serpentes (
Within the tribe Philodryadini, the genus Philodryas is prominent, comprising 16 recognised species (
Philodryas patagoniensis is one of the most widely distributed species within the genus, ranging from north-eastern Brazil to northern Patagonia in Argentina. Its distribution spans Paraguay, Uruguay, and eastern Bolivia, including a variety of biomes and ecoregions (Nogueria et al. 2019; Fig.
The left side of the figure shows a map of southern South America (AR: Argentina; BO: Bolivia; BR: Brazil; PA: Paraguay; and UR: Uruguay), highlighting the distribution of the two morphotypes identified for Philodryas patagoniensis sensu lato. Grey circles represent the A-morphotype, while black circles denote the B-morphotype. Squares and rectangles indicate locations where genetic samples were collected, and their colours correspond with those on the right side of the figure. The right side of the figure displays the haplotype networks produced by the PopArt software for each gene, based on the number of variable sites in the sequences, revealing the presence of two distinct haplogroups. These correspond well with the A- and B- morphotypes and also show a strong geographic pattern.
Therefore, considering the issues outlined in the previous paragraphs, we aimed to analyse the variation in external morphology, osteology, and hemipenes of P. patagoniensis, alongside genetic analyses using the mitochondrial genes 12S and 16S, and the nuclear gene c-mos. As a result, we provide (1) the identification of two previously unrecognised genetic and morphological groups within P. patagoniensis, (2) an analysis of the position and relationships of both groups within Philodryas using a total evidence phylogenetic approach, (3) a re-description of P. patagoniensis to encompass the full range of external variation exhibited by the species, and (4) the description of a new species previously classified under P. patagoniensis.
We sequenced fragments of two mitochondrial genes (12S and 16S ribosomal RNA) and one nuclear gene (c-mos). These genes were primarily selected because they are the most widely used in phylogenetic studies of Dipsadinae yielding successful results (e.g.,
Total genomic DNA was extracted from tissue samples using a saline DNA extraction method based on lithium chloride, following the protocol of
The PCR was performed using a Bio-Rad T-1000 thermal cycler. The annealing temperature was 54 °C for the 12S and 16S gene fragments and 56 °C for the c-mos fragment. Amplified products were sequenced in Macrogen Inc. (Seoul, South Korea).
Most specimens used in the morphological analysis are currently housed in the herpetological collections of the Museo Argentino de Ciencias Naturales “Bernardino Rivadavia” (MACN, Buenos Aires, Argentina) and Museo de La Plata (MLP.JW and MLP.R, Buenos Aires, Argentina). In addition, we examined photographs of key specimens from Natural History Museum (BMNH, London, United Kingdom), Museu de Ciências e Tecnologia da Pontifícia Universidade Católica do Rio Grande do Sul (MCP, Rio Grande do Sul, Brazil) and United States National Museum, Smithsonian Institution (USNM, Washington, United States: lectotype of P. patagoniensis) (File S1). The sampling used for study of morphological characters (such as scale counts, body measurements, and colouration) was substantially larger than that used for other analyses (genetic, hemipenial, cranial osteology, and other morphology traits), resulting in various degrees of freedom among character types (File S1, Table SS2). Morphological comparisons and analyses within Philodryas patagoniensis were based on morphotypes that were highly consistent with different genetic types (haplogroups). Juvenile specimens were identified following
Cranial osteology was analysed based on the limited descriptions available for skulls of the genus (
The geographic distribution map of the morphotypes of P. patagoniensis was constructed using QGIS v3.28 software (
Sequences were aligned using the MUSCLE algorithm in MEGA7 v7.0 (
We conducted a phylogenetic analysis of Philodryas using a concatenated matrix of the three genes, comprising our sequences and those retrieved from GenBank (1161 bp, 58 terminals). We coded seven external morphological characters related to body measurements and scutellation (four binary and three multistate), five characters concerning the shape and pattern of cephalic scales (three binary and two multistate), and four colour pattern characters (one binary and three multistate), totalling 16 external morphological characters. The states of continuous scutellation characters (i.e., ventrals, subcaudals) were delimited and coded on the basis of the observed discontinuities within the overall variation of a given character. Following this procedure, we selected midpoints within these gaps and defined them as boundaries separating each character state. These were coded following
The total evidence analysis (1161 base pairs plus 28 morphological characters, and 58 terminals; see matrix in File S3) was performed using the traditional search option, beginning with 100 rounds of Wagner trees. Tree Bisection and Reconnection (TBR) was used as the swapping algorithm, with 10 trees saved per round and trees replaced. Chlorosoma viridissima was designated as outgroup. A strict consensus tree, the absolute Bootstrap support (100 replicates) and Jackknife support (removal probability of 40%, 100 replicates), and the list of synapomorphies for each clade, were obtained using the specific tools of the TNT software. The resulting consensus tree was exported as a tree in which the number of synapomorphies on each branch is represented by varying branch lengths, similar to, but distinct from a phylogram. For this purpose, we used the following script: “ttag = ; blength* n; export > filename;” (where n refers to the number of the tree to be exported, using a filename with the .nex extension). For further details on this and other TNT commands, see
The parsimony analysis implemented in TCS for each gene alignment separately identified two haplogroups within Philodryas patagoniensis, referred to here as A- and B-haplogroups, each comprising several haplotypes (Fig.
Nucleotide p distances (below diagonal) and standard deviations (above diagonal) of ten species of Philodryas, along with C. viridissima and X. argenteus. Values are presented as percentage for each gene individually (extremely low values expressed as < 0.1). Philodryas psammophidea lacks c-mos sequences.
| 12S | |||||||||||||
| sp/sp | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | |
| P. psammophidea | 1 | – | 2 | 2 | 2 | < 0.1 | 1 | 2 | 2 | 2 | 1 | 2 | 2 |
| P. olfersii | 2 | 8 | – | 1 | 2 | 1 | 1 | 1 | 2 | 1 | 1 | 2 | 2 |
| P. baroni | 3 | 8 | 7 | – | 1 | 2 | 1 | 2 | 1 | 1 | 1 | 2 | 2 |
| P. agassizii | 4 | 8 | 8 | 6 | – | 2 | 2 | 1 | 1 | 2 | 2 | 2 | 2 |
| P. aestiva | 5 | 1 | 7 | 8 | 7 | – | 1 | 2 | 2 | 2 | 1 | 2 | 2 |
| P. mattogrossensis | 6 | 6 | 7 | 7 | 7 | 6 | – | 2 | 1 | 2 | 1 | 2 | 2 |
| P. patagoniensis A | 7 | 7 | 8 | 7 | 4 | 7 | 7 | – | 1 | 2 | 2 | 2 | 2 |
| P. patagoniensis B | 8 | 8 | 8 | 6 | 4 | 7 | 6 | 4 | – | 1 | 2 | 2 | 2 |
| P. trilineata | 9 | 9 | 7 | 3 | 7 | 9 | 8 | 8 | 7 | – | 2 | 2 | 2 |
| P. nattereri | 10 | 6 | 6 | 6 | 8 | 6 | 7 | 8 | 8 | 8 | – | 2 | 2 |
| C. viridissima | 11 | 10 | 8 | 9 | 10 | 10 | 8 | 10 | 9 | 9 | 8 | – | 2 |
| X. argenteus | 12 | 10 | 11 | 11 | 10 | 10 | 10 | 9 | 9 | 11 | 10 | 9 | – |
| 16S | |||||||||||||
| sp/sp | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | |
| P. psammophidea | 1 | – | 1 | 1 | 1 | < 0.1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 |
| P. olfersii | 2 | 5 | – | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 |
| P. baroni | 3 | 6 | 5 | – | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 |
| P. agassizii | 4 | 4 | 5 | 6 | – | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 |
| P. aestiva | 5 | 1 | 5 | 5 | 4 | – | 1 | 1 | 1 | 1 | 1 | 1 | 1 |
| P. mattogrossensis | 6 | 6 | 5 | 4 | 5 | 6 | – | 1 | 1 | 1 | 1 | 1 | 1 |
| P. patagoniensis A | 7 | 5 | 5 | 5 | 4 | 4 | 6 | – | 1 | 1 | 1 | 1 | 1 |
| P. patagoniensis B | 8 | 3 | 4 | 6 | 3 | 4 | 6 | 3 | – | 1 | 1 | 1 | 1 |
| P. trilineata | 9 | 5 | 5 | 2 | 5 | 4 | 5 | 5 | 5 | – | 1 | 1 | 1 |
| P. nattereri | 10 | 7 | 7 | 7 | 6 | 6 | 7 | 6 | 6 | 7 | – | 1 | 1 |
| C. viridissima | 11 | 7 | 7 | 7 | 7 | 7 | 8 | 7 | 6 | 7 | 7 | – | 1 |
| X. argenteus | 12 | 5 | 4 | 4 | 3 | 5 | 5 | 6 | 4 | 4 | 5 | 7 | – |
| C–MOS | |||||||||||||
| sp/sp | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | |
| P. psammophidea | 1 | – | × | × | × | × | × | × | × | × | × | × | × |
| P. olfersii | 2 | × | – | < 0.1 | 1 | < 0.1 | < 0.1 | 1 | 1 | < 0.1 | 1 | 1 | 1 |
| P. baroni | 3 | × | 1 | – | < 0.1 | < 0.1 | < 0.1 | < 0.1 | < 0.1 | < 0.1 | < 0.1 | < 0.1 | 1 |
| P. agassizii | 4 | × | 2 | 1 | – | < 0.1 | < 0.1 | < 0.1 | < 0.1 | < 0.1 | 1 | 1 | 1 |
| P. aestiva | 5 | × | 1 | 1 | < 0.1 | – | < 0.1 | < 0.1 | < 0.1 | < 0.1 | < 0.1 | < 0.1 | 1 |
| P. mattogrossensis | 6 | × | 1 | 1 | 1 | 1 | – | < 0.1 | < 0.1 | < 0.1 | < 0.1 | < 0.1 | 1 |
| P. patagoniensis A | 7 | × | 2 | 1 | 1 | < 0.1 | 1 | – | < 0.1 | < 0.1 | < 0.1 | 1 | 1 |
| P. patagoniensis B | 8 | × | 2 | 1 | 1 | < 0.1 | 1 | 1 | – | < 0.1 | < 0.1 | 1 | 1 |
| P. trilineata | 9 | × | 1 | < 0.1 | 1 | 1 | 1 | 1 | 1 | – | < 0.1 | < 0.1 | < 0.1 |
| P. nattereri | 10 | × | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | – | 1 | 1 |
| C. viridissima | 11 | × | 2 | 1 | 2 | 1 | 1 | 2 | 2 | 1 | 1 | – | 1 |
| X. argenteus | 12 | × | 2 | 1 | 2 | 1 | 1 | 2 | 2 | 1 | 2 | 2 | – |
We analysed the morphological characters based on the assignment of specimens to the two haplogroups/morphotypes. For external morphology, we measured 142 specimens representing both morphotypes (A-morphotype = 42; B-morphotype = 100; see Table
Box-plots comparing body proportions (%) and scale counts between both morphotypes (A and B), stratified by sex, and globally. Asterisks denote significant differences at p < 0.05. In the plot, black squares represent the mean, white squares denote the mean ± standard error, lines reflect the mean ± 2standard deviation.
Measurements, body proportions and scale counts of each morphotype. Values presented as mean (mm) ± standard deviation, alongside minimum and maximum values. Abbreviations (in the order they appear in the table): HL, head length; SVL, snout-vent length; TL, tail length; TTL, total length; V, ventral scales; SC, subcaudal scales.
| Variables | A-morphotype | B-morphotype | ||||
| Sex | ♂ | ♀ | Global | ♂ | ♀ | Global |
| HL | (n = 18) | (n = 22) | (n = 40) | (n = 40) | (n = 47) | (n = 87) |
| 28±3.1 | 32±4.3 | 30.2±4.2 | 24.4±2.9 | 30.2±4.7 | 27.5±4.9 | |
| (21.1–33.1) | (22.9–39.4) | (21.1–39.4) | (18.5–30.6) | (20.3–39.4) | (18.5–39.4) | |
| SVL | (n = 18) | (n = 22) | (n = 40) | (n = 40) | (n = 47) | (n = 87) |
| 678.5±104.5 | 849.7±142.9 | 772.7±152.3 | 545.5±73.1 | 765.8±147.4 | 664.5±161.9 | |
| (435–871) | (497–1170) | (435–1170) | (425–752) | (471–1130) | (425–1130) | |
| TL | (n = 18) | (n = 22) | (n = 40) | (n = 39) | (n = 46) | (n = 85) |
| 275.7±43.3 | 285.2±52.1 | 280.9±47.9 | 205.5±25.8 | 218.5±41.5 | 212.5±35.6 | |
| (183–343) | (175–382) | (175–382) | (161–259) | (128–285) | (128–285) | |
| TTL | (n = 18) | (n = 22) | (n = 40) | (n = 37) | (n = 46) | (n = 83) |
| 954.3±138.8 | 1135±191.9 | 1053.6±191.1 | 747.2±95.6 | 981.1±180 | 876.8±188.4 | |
| (618–1207) | (672–1552) | (618–1552) | (605–976) | (622–1415) | (605–1415) | |
| %HL/TTL | (n = 18) | (n = 22) | (n = 40) | (n = 37) | (n = 46) | (n = 83) |
| 2.9±0.2 | 2.8±0.3 | 2.9±0.2 | 3.3±0.3 | 3.1±0.3 | 3.2±0.3 | |
| (2.7–3.4) | (2–3.4) | (2–3.4) | (2.7–4.6) | (2.3–4) | (2.3–4.6) | |
| %SVL/TTL | (n = 18) | (n = 22) | (n = 40) | (n = 37) | (n = 46) | (n = 83) |
| 71.1±2.3 | 74.9±1.4 | 73.2±2.6 | 72.5±1.6 | 77.6±2.2 | 75.3±3.2 | |
| (68–76.4) | (71.8–77.7) | (68–77.7) | (68.2–77) | (74.1–88.8) | (68.2–88.8) | |
| %TL/TTL | (n = 18) | (n = 22) | (n = 40) | (n = 37) | (n = 46) | (n = 83) |
| 28.9±2.3 | 25.1±1.4 | 26.8±2.6 | 27.5±1.6 | 22.4±2.2 | 24.6±3.2 | |
| (23.6–32) | (22.2–28.2) | (22.2–32) | (22.9–31.8) | (11.2–25.9) | (11.2–31.8) | |
| V | (n = 19) | (n = 23) | (n = 42) | (n = 46) | (n = 54) | (n = 100) |
| 177±6 | 187±5 | 183±8 | 170±6 | 177±6 | 174±7 | |
| (166–191) | (179–199) | (166–199) | (159–191) | (162–193) | (159–193) | |
| SC | (n = 14) | (n = 19) | (n = 33) | (n = 46) | (n = 52) | (n = 98) |
| 107±8 | 94±7 | 100±10 | 88±7 | 75±6 | 81±9 | |
| (96–124) | (81–106) | (81–124) | (68–109) | (57–96) | (57–109) | |
Although cephalic scales and dorsal scale counts showed considerable variation, we identified a dominant pattern for each scale type within each morphotype (e.g., dorsal scale formula 19–19–15 vs. other less represented combinations, see Table
Lateral (A–C), dorsal (D–F), and ventral (G–I) views of the heads of representative specimens from both morphotypes. The left column (A, D, G) shows a B-morphotype specimen from the Monte of Plains and Plateaus (Rio Negro province, MLP.R 5313). The middle column (B, E, H) features a B-morphotype specimen from the Pampa (Buenos Aires province, MLP.R 6039). The right column (C, F, I) presents an A-morphotype specimen from the Humid Chaco (Corrientes province, MLP.R 5449, holotype). Arrows and asterisks highlight character states (see File S2). Photographs A–F include a line-drawing diagram highlighting in grey the scales involved in each character state, as indicated by arrows and asterisks in the corresponding images. Scale bars = 5 mm.
Lateral views at midbody of the same specimens described in Figure
Dorsal views at midbody of the same specimens described in Figure
Ventral views at midbody of the same specimens described in Figure
Global pholidosis variation of each morphotype of P. patagoniensis. The most common formula for each pholidosis type is highlighted in bold.
| Pholidosis type | A–morphotype | B–morphotype |
| Preoculars | 1 (n = 41) – 1 / 2 (n = 1) | 1 (n = 99) |
| Postoculars | 2 (n = 42) | 2 (n = 99) |
| Temporals | 1+2 (n = 32) – 1+2+3/1+2 (n = 2) 1+1+2 (n = 2) – 1+1+2/1+2 (n = 1) 1+2/1+2+3 (n = 1) – 1+1/1+2 (n = 1) 2+2/1+2 (n = 1) – 1+2/1+4 (n = 1) 1+3+1/1+2 (n = 1) | 1+2 (n = 70) – 1+1+2/1+2 (n = 4) 1+2/1+3 (n = 3) – 1+2+3/1+2 (n = 2) 2+2 (n = 2) – 2+3 (n = 2) 1+2+3 (n = 1) – 1+2/2+2 (n = 1) 1+3/1+2 (n = 1) – 1+1+3/1+3 (n = 1) 1+2/1+1+2 (n = 1) – 1+2+2/1+2 (n = 1) 1+2+2/1+2+3 (n = 1) – 1+3+3/2+2+3 (n = 1) 2+3/1+3 (n = 1) – 1+1/1+1+2 (n = 1) 2+3/2+1+2 (n = 1) – 1+1/1+2 (n = 1) 1+1+1/1+2 (n = 1) – 1+2/1+4 (n = 1) 2+1+2 (n = 1) – 1+2/2+1+2 (n = 1) |
| Supralabials | 7 [3,4] (n = 42) | 7 [3,4] (n = 85) – 8 [4,5] (n = 7) 8 [4,5] / 7 [3,4] (n = 3) – 7 [3,4,5] / 7 [3,4] (n = 1) 8 [3,4,5] / 8 [4,5] (n = 1) – 8 [3,4,5] / 7 [3,4] (n = 1) 8 [3,4] (n = 1) |
| Infralabials | 9 [5] (n = 40) – 9 [5] / 8 [5] (n = 1) 11 [6] / 10 [6] (n = 1) | 9 [5] (n = 81) – 10 [5] / 9 [5] (n = 4) 10 [5] (n = 4) – 9 [5] / 8 [5] (n = 1) 11 [5] (n = 1) – 10 [6] / 9 [5] (n = 1) 8 [5] / 9 [5] (n = 1) – 9 [5] / 10 [5] (n = 1) 9 [6] / 8 [5] (n = 1) – 9 [6] / 9 [5] (n = 1) 10 [6] (n = 1) – 9 [5] / 10 [6] (n = 1) |
| Dorsals | 19–19–15 (n = 31) – 20–19–15 (n = 4) 18–19–15 (n = 3) – 19–18–15 (n = 2) 19–19–16 (n = 1) – 19–15–15 (n = 1) | 19–19–15 (n = 89) – 19–19–16 (n = 5) 19–18–15 (n = 3) – 20–19–15 (n = 3) 19–19–13 (n = 1) – 20–15–15 (n = 1) 21–19–15 (n = 1) – 18–19–15 (n = 1) |
The hemipenes of both morphotypes were found to be extremely similar (Fig.
Sulcate (A, C, E) and asulcate (B, D, F) faces of the hemipenes from both morphotypes: (A, B) B-morphotype specimen from the Monte of Plains and Plateaus (Neuquén province, MLP.JW 1821); (C, D) B-morphotype specimen from Pampa (Buenos Aires province, MLP.R 6039); and (E, F) A-morphotype specimen from Humid Chaco (Corrientes province, MLP.R 5449, holotype). Scale bars = 5 mm.
The cranial osteological analysis revealed variations in four bones between the two morphotypes: shape of the vomerine process of the premaxilla (rectangular in A-morphotype, square in B-morphotype, character 17), orientation of the vomerine processes of the premaxilla (divergent in A-morphotype, sub-parallel in B-morphotype, character 18), general appearance of the horizontal dorsal nasal lamina (slender in A-morphotype, robust in B-morphotype, character 20), posterior edge of the horizontal dorsal nasal lamina (notched in A-morphoptype, smooth in B-morphotype, character 21), configuration of the parabasisphenoid rostrum (bidentate in A-morphotype, tridentate in B-morphotype, character 22), and shape of the maxillary process of the palatine (pointed in A-morphotype, rounded in B-morphotype, character 24); see Figure
Osteological characters of the A-morphotype (right side drawings: B, D, F, H) and B-morphotype (left side drawings: A, C, E, G): (A, B) ventral view of the premaxilla; (C, D) dorsal view of nasals; (E, F) ventral view of the parabasisphenoid; and (G, H) dorsal view of the left palatine. Arrows highlight character states (see File S2). Scale bars = 1 mm.
We obtained 70 equally parsimonious trees (374 steps), in which both clades of Philodryas patagoniensis (A- and B-morphotypes) were consistently recovered with high support (each with Bootstrap 100 and Jackknife 100). As consequence, the consensus tree retained the clades described in the next paragraphs (Fig.
Strict consensus tree constructed from a parsimony analysis using total evidence. Bootstrap and jackknife support values for each major clade are shown below the grey circles, in that order and separated by a slash. The number of synapomorphies supporting each clade of interest is indicated in rectangles, with the number before the plus sign referring to morphological synapomorphies and the number after to molecular ones.
The patagoniensis group was defined by three morphological synapomorphies (supralabial formula 7(3,4)*; infralabial formula 9(5); anterior border of the optic foramen positioned anterior to the midline that bisects the orbit*) and six molecular synapomorphies (asterisks indicate unambiguous synapomorphies). Within this group, we found two distinct clades: one corresponding to the A-morphotype and the other to the B-morphotype + P. agassizii. The A-morphotype clade was strongly supported by five morphological (head proportionally long with HL/TTL<3%; lateral edge of the supraocular scale straight in a dorsal view; long first temporal scale with height <45% of the length; ventral scales at midbody with consistently transverse lines and lacking lateral spots*; and dorsal scales at midbody in adults exhibiting a dotted pattern) and 11 molecular synapomorphies. The clade comprising B-morphotype + P. agassizii is supported by six morphological synapomorphies (mean number of ventral scales<178*; mean number of subcaudal scales<87*; dorsal head scales bearing noticeable black spots centrally and occasionally along the margins; sub-parallel vomerine processes of the premaxilla; a robust horizontal dorsal nasal lamina; and a rounded maxillary process of the palatine), but we did not recover molecular synapomorphies. The species P. agassizii exhibited four morphological autapomorphies (13 dorsal scale rows at the anterior body*; 13 dorsal scale rows at midbody*; 13 dorsal scale rows at the posterior body; and an infralabial formula 8(5)*), and 12 molecular synapomorphies. All terminals of the B-morphotype formed a clade supported by two morphological synapomorphies (midbody ventral scales in adults exhibiting a transverse line that may be complete, incomplete, or absent with a lateral black spot always present; and a maculated dorsal and lateral colour pattern at midbody in adults*) in addition to 11 molecular synapomorphies. See File S2 for the details of each character state.
The recovered topology and levels of support enabled the recognition of two distinct taxa within the nominal P. patagoniensis. Notably, one of these was grouped in a clade that included all specimens of P. patagoniensis (Girard, 1858) sensu stricto. In contrast, the other clade comprises all A-haplogroup specimens (A-morphotype), representing a new species that has remained cryptic due to the extensive morphological variability within P. patagoniensis sensu lato. The only specimen of P. agassizii genetically analysed in this study corresponds to the sole available sequence in the GenBank, and (except
To formally re-describe P. patagoniensis (Girard, 1858) and encompass the full spectrum of morphological variation, we will focus on key aspects and distinctive features that differentiate it (B-haplogroup, B-morphotype, southern populations: see above for the list of characters) from the A-morphotype (A-haplogroup, northern populations), which will be designated as a new species.
Callirhinus patagoniensis Girard, 1858: 182
Euophrys modestus Günther, 1858: 139
Pseudophis patagoniensis – Cope (
Liophis poecilostictus Jan, 1863a: 289
Dirrhox patagoniensis – Cope (
Philodryas schottii (not Schlegel, 1837) –
Chlorosoma schottii –
Philodryas patagoniensis –
We propose changing the common name “Patagonia green racer” used for P. patagoniensis sensu lato to “Patagonia maculated racer” to better reflect the characteristics (i.e., distinctive maculation pattern) of P. patagoniensis sensu stricto.
In-life colouration of A a Monte of Plains and Plateaus specimen of P. patagoniensis (Rio Negro, Chipauquil, Meseta de Somuncura), B a Pampa specimen of P. patagoniensis (Buenos Aires, Sierra de Curamalal), and C a Humid Chaco specimen of P. pseudomamba sp. nov. (Chaco, Tres Isletas). Photos are not to scale. Photo credits: David Vera (A), Eduardo Schaeffer (B).
USNM 5536, an adult female from the mouth of the Río Negro, border of Río Negro and Buenos Aires provinces, Argentina (41.0241°S, 62.7896°W; elevation 0 m), collected by the U.S. Exploring Expedition under the command of Captain Charles Wilkes during 1838–1842.
We examined 213 museum specimens (see File S1) from Argentina and Uruguay, corresponding to the B-morphotype. This collection included photographs of the lectotype, and also of the two syntypes of E. modestus, which were entirely consistent with our re-description of P. patagoniensis (see below), thereby confirming that name as a junior synonym of P. patagoniensis sensu stricto. Additionally, numerous photographs from citizen science platforms were analysed to enhance the distribution dataset, bringing the total number of B-morphotype specimens considered for this purpose to 322 (File S1).
Philodryas patagoniensis differs from all other species of the genus by the following combination of characters: (1) dorsal scale rows 19–19–15, (2) HL/TTL between 2.3 and 4.6%, (3) SVL/TTL between 68.2 and 88.8%, (4) TL/TTL between 11.2 and 31.8%, (5) ventral scales between 159 and 193, (6) subcaudal scales between 57 and 109, (7) loreal markedly quadrate, (8) dorsal half of the preocular barely exceeds the posterior margin of the loreal, (9) supralabials 7 (3,4), (10) lateral border of the supraocular concave in dorsal view, (11) first temporal scale short (height >45% of the length), (12) dorsal scales of the head brown, irregularly spotted with black, and bordered with wide black margins, (13) dorsal body design with maculated pattern, and (14) ventral scales exhibiting lateral black spots.
See Fig.
In adult males, TTL ranges from 605 to 976 mm (mean: 747.2 ± 95.6 mm), HL from 18.5 to 30.6 mm (mean: 24.4 ± 2.9 mm), SVL from 425 to 752 mm (mean: 545.5 ± 73.1 mm), and TL from 161 to 259 mm (mean: 205.5 ± 25.8 mm); in adult females, TTL ranges from 622 to 1415 mm (mean: 981.1 ± 180 mm), HL from 20.3 to 39.4 mm (mean: 30.2 ± 4.7 mm), SVL from 471 to 1130 mm (mean: 765.8 ± 147.4 mm), and TL from 128 to 285 mm (mean: 218.5 ± 41.5 mm). Tables
In life, the colouration of P. patagoniensis (Fig.
Some specimens from both patterns exhibit paravertebral lines on the dorsal scales. The lateral areas of the head (the ventral half of the supralabials and infralabials), the gular region, and all ventral and subcaudal scales are pale yellow. The caudal edge of each supralabial is bordered in black. The pale-yellow ventral colouration is interrupted by black pigmentation on the ventral scales (less distinct on the subcaudals). This pigmentation forms lateral spots along adjacent scales’ anterior and posterior margins, sometimes producing a black line between them, which may be complete, incomplete, or absent. The tongue is bicoloured, with a red base and a black fork.
The colouration in preservative remains similar to that observed in life, except in poorly preserved specimens or those fixed with aggressive concentrations of formalin, which tend to exhibit a general darkening of the scales (e.g., obscuring maculae and other scale patterns). Specimens that have been properly fixed and well preserved exhibit a slightly attenuated pattern compared to live individuals; for example, the ventral scales shift from pale yellow to beige or white. The contrast between the head and dorsal body colouration remains evident, although in slightly muted tones. Loss of the outermost scale layer can result in a lighter appearance (pale lavender; see Fig.
The hemipenes of P. patagoniensis are long and bilobed, with the maximum width occurring at the level of the lobes (width 2.8 to 3.5 times the length of the hemipenis). The lobes comprise approximately one-third of the total hemipenis length. On the sulcate face, the spermatic groove is bifurcated near the base, with both branches running parallel and close to each other before diverging approximately halfway along the hemipenis. The sulcate and asulcate faces exhibit longitudinal rows of elongated spines that increase in length distally. Among the eight hemipenes examined, the sulcate face displayed various spine configurations: 4/4, 4/6, 5/5 (n = 3), 5/6 (n = 2), and 7/7 (Fig.
Based on current knowledge, the distribution of Philodryas patagoniensis should be considered restricted to Argentina and Uruguay, with most records concentrated in Argentina. In Argentina, the species occurs across nine provinces: Buenos Aires, Chubut, Córdoba, La Pampa, Mendoza, Neuquén, Río Negro, San Luis, and Santa Fe. Its range encompasses six ecoregions (Patagonian Forests, Dry Chaco, Espinal, Steppe, the Monte of Plains and Plateaus, and the Pampa) and 22 regional sub-complexes sensu
Finally, the species has also been recorded in 14 departments of Uruguay: Canelones, Colonia, Durazno, Florida, Lavalleja, Maldonado, Montevideo, Paysandú, Río Negro, Rocha, Salto, San José, Soriano, and Tacuarembó. These localities span seven ecozones sensu
The species was initially described as Callirhinus patagoniensis by
Dryophilax schottii (not Schlegel, 1837) – Duméril (
Philodryas schottii (not Schlegel, 1837) – Günther (
Pseudophis schottii – Cope (
Chlorosoma schottii –
Philodryas patagoniensis – Hoge (1964: 67, in part), Peters and Orejas-Miranda (1970: 244, in part), Thomas (1976: 172, in part), Williams and Francini (1991: 75, in part), Cei (1993: 639, in part), Lobo and Scrocchi (
Pseudablabes patagoniensis – Melo-Sampaio et al. (
South American dotted racer.
MLP.R 5449, an adult male from Colonia Carlos Pellegrini, San Martin department (28.5333°S, 57.1712°W; elevation 67 m), Corrientes Province, Argentina; collected by Cátedra de Herpetología, Facultad de Ciencias Naturales y Museo, Universidad Nacional de La Plata between 11 and 15 November 2008.
Argentina. Chaco Province: MLP.JW 1949 (adult female) from Juan José Castelli, General Güemes department, collected by I. Berkunsky in January 2001; MACN 38710 (adult female) from Resistencia, San Fernando department, collected by C. Schlinger on 19 November 1956. Corrientes Province: MACN 50189 (adult female) from Provincial Road 5 between San Luis del Palmar and Laguna Brava, San Cosme department, collected by B. Cajade and E. Nenda on 30 July 2017; MACN 48195 (adult male) from Yapeyú, San Martín department, collected by Ayudantía Marítima Yapeyú on 6 September 1965. Entre Ríos Province: MACN 48165 (adult female) from the surroundings of La Paz, La Paz department, collected by M. Baldi on 7 November 1975; MACN 48163 (adult female) from Pronunciamiento, Uruguay department, collected on 30 October 1967. Formosa Province: MACN 48134 (adult male) from Bartolomé de Las Casas, Patiño department. Misiones Province: MACN 48166 (adult female) from Posadas, Capital department, collected on 24 April 1966. Santa Fe Province: MLP.R 6445 (adult male) from 4 km NE of Aguará Grande, San Cristóbal department, collected by L. Alcalde, M. J. Cassano and M. B. Semeñiuk on 29 October 2016; MLP.R 6434 (adult male) from Provincial Road 3 in Los Tábanos, Vera department, collected by L. Alcalde, M. J. Cassano and M. B. Semeñiuk on 21 October 2016; MLP.R 6450 (adult female) from Provincial Road 3 near Vera, Vera department, collected by L. Alcalde, M. J. Cassano and M. B. Semeñiuk on 25 October 2016; MLP.R 6455 (adult male) from road cross between Provincial Road 3 and National Road 11 near Vera, Vera department, collected by L. Alcalde, M. J. Cassano and M. B. Semeñiuk on 25 October 2016. Santiago del Estero Province: MACN 4325 (adult male) form Malbrán, Aguirre department, collected by Cazale and Peyrade. — Brazil: São Pablo State: MACN 36703 (adult female) from the surroundings of Ibiúna, Ibiúna municipality, collected by Instituto Butantán in April 1996.
For the species description, 178 museum specimens corresponding to the A-morphotype were examined (File S1), including those from the type series. In addition, numerous photographs from citizen science platforms were analysed to enhance the distribution dataset, bringing the total number of A-morphotype specimens considered to 403 (File S1).
The prefix pseudo of the epithet derives from Greek, meaning “falseness” or “falsehood”. Mamba refers to the term “imamba” used in the Bantú language (spoken by various African ethnic groups) to designate snakes of the genus Dendroaspis, commonly known in English and other languages as “mambas”. The species name was explicitly inspired by D. polylepis (the black mamba), due to the general physical resemblance and notably aggressive behaviour shared by both species.
Philodryas pseudomamba sp. nov. differs from all other species of the genus by the following combination of characters: (1) dorsal scale rows 19–19–15, (2) HL/TTL between 2 and 3.4%, (3) SVL/TTL between 68 and 77.7%, (4) TL/TTL between 22.2 and 32%, (5) ventral scales between 166 and 199, (6) subcaudal scales between 81 and 124, (7) loreal scale rectangular, longer than tall, (8) dorsal half of the preocular markedly exceeding the posterior margin of the loreal, (9) supralabials 7 (3,4), (10) lateral border of the supraocular straight in dorsal view, (11) first temporal scale large (height being less than 40% of the length), (12) dorsal scales of the head with completely immaculate olive colouration featuring tiny black scale margins, (13) dorsal body design dotted, not maculated, and (14) ventral scales lacking lateral black spots.
See Figs
Morphological features include: loreals 1/1 (square-shaped with a dominant cranial-caudal axis, longer than tall), preoculars 1/1 (with the dorsal half markedly exceeding the half of the loreal), postoculars 2/2, temporals 1+2/1+2 (the first temporal is long, with the height representing 35% of the scale length), supralabials 7(3,4)/7(3,4) with the 5th and 6th being larger than the others (Fig.
In preservative, the dorsal surfaces of the head and neck are olive brown, closely matching the colouration of the dorsal body (Fig.
The hemipenes of the holotype of P. pseudomamba sp. nov. are long and bilobed, with the lobes comprising approximately one-third of the total hemipenial length. The maximum width occurs at the level of the lobes and corresponds to 3.1 times the hemipenial length. The branches of the spermatic groove bifurcate near the base of the hemipenis and run in close parallel before diverging at approximately the midpoint of the organ. The sulcate and asulcate faces bear longitudinal rows of enlarged spines that increase in height distally. On the asulcate face, the spine configuration is 5/6, and on the sulcate face, 6/6 (Fig.
In adult males, TTL ranges from 618 to 1207 mm (mean: 954.3 ± 138.8 mm), HL from 21.1 to 33.1 mm (mean: 28 ± 3.1 mm), SVL from 435 to 871 mm (mean: 678.5 ± 104.5 mm), and TL from 183 to 343 mm (mean: 275.7 ± 43.3 mm); in adult females, TTL ranges from 672 to 1552 mm (mean: 1135 ± 191.9 mm), HL from 22.9 to 39.4 mm (mean: 32 ± 4.3 mm), SVL from 497 to 1170 mm (mean: 849.7 ± 142.9 mm), and TL from 175 to 382 mm (mean: 285.2 ± 52.1 mm). Tables
The colouration in life (Fig.
The ventral colouration of the head and body is pale yellow. The boundary between the dorsal ochre and the ventral pale-yellow lies below the midpoint of the supralabials. The black pigmentation along the sutures of the head scales is more delicate than in P. patagoniensis, particularly in the parietals, frontal, and supraoculars, which also lack the irregular dark markings characteristic of P. patagoniensis. The pale yellow ventral colouration is occasionally interrupted by black lines between successive ventral scales. Each of these lines is typically continuous, although they may less frequently be interrupted at the mid-ventral region. In the subcaudal region, this pattern becomes progressively blurred. The tongue is bicoloured, displaying a red base and a black fork.
In preservative, the colouration resembles that observed in life, except in poorly preserved specimens. Adequately fixed and well-preserved specimens appear pale compared to live specimens. For example, the ventral scales often fade from pale yellow to beige or white, and the contrast between the head and dorsal body colouration becomes less distinct. Although melanistic specimens are frequently found in collections (e.g., MACN 10228 or MACN 39619), we did not encounter melanism during our fieldwork. Typical head and body patterns are entirely or partially obscured in these melanistic specimens. Furthermore, black rings surrounding dorsal scales are present in some specimens and appear more frequently than in P. patagoniensis (e.g., MACN 7841, MACN 48179).
The other specimen examined for hemipenial morphology differed from the holotype in a single aspect: it exhibited a 5/5 configuration of the elongated spines on the sulcate and asulcate faces.
The dorsal scale rows distinguish Philodryas pseudomamba sp. nov. (19–19–15) from P. agassizii (13–13–13), P. varia (17–17–13 to 19–17–13;
Lastly, P. pseudomamba sp. nov. differs from P. patagoniensis by (character states of the former in parenthesis): (1) head and body shorter (larger), (2) short tail (large), (3) subcaudal scales 57–109 and ventral scales 159–193 (high number in both cases: 81–124 subcaudal scales and 166–199 ventral scales), (4) loreal scale markedly quadrate with no dominant axis, and the dorsal half of the preocular barely exceeds the posterior margin of the loreal (loreal scale is rectangular, longer than tall, with the dorsal half of the preocular markedly exceeding the posterior margin of the loreal), (5) external border of the supraocular concave in dorsal view (straight in dorsal view), (6) first temporal scale shorter, with the height representing more than 45% of the length (longer than it is tall, with the height being less than 40% of the length), (7) parietal, frontal, and supraocular scales brown, irregularly spotted with black, and bordered with wide black margins (completely immaculate olive colouration featuring tiny black scale margins), (8) dorsal scales exhibit a maculated pattern (not maculated), (9) lateral black spots present in the ventral scales (absent), (10) vomerine processes of the premaxilla sub-parallel (slightly divergent), (11) dorsal lamina of the nasal robust with non-concave posterolateral flange (dorsal lamina of the nasal slender with concave posterolateral flange), (12) three pointed and double-notched anterior ends of the parabasisphenoid (two pointed and single median-notched), and (13) rounded maxillary process of the palatine (triangular).
See Fig.
In Uruguay, P. pseudomamba has been recorded in seven departments: Artigas, Cerro Largo, Paysandú, Río Negro, Rivera, Salto, and Tacuarembó. It occurs in four ecozones: Western Sedimentary Basin, Basaltic Slope, Gondwanic Sedimentary Basin, and Eastern Hills (
In this study we identified two distinct taxa, P. patagoniensis sensu stricto (hereafter referred to as such unless otherwise specified) and P. pseudomamba sp. nov., based on variation in two mitochondrial genes (12S and 16S ribosomal RNA) and one nuclear gene (c-mos). The p distance values observed between P. patagoniensis and P. pseudomamba sp. nov. exceeded those found between other well-differentiated species pairs within the genus (e.g., P. aestiva–P. psammophidea for 12S, P. aestiva–P. agassizii for c-mos, and P. trilineata–P. baroni for all three genes; see Table
Our objective was to establish a phylogenetic framework to assess the position of the new species relative to P. patagoniensis and other species of Philodryas, rather than to perform a comprehensive phylogenetic analysis of the genus’ internal and external relationships. Accordingly, we do not provide a detailed discussion of the phylogenetic relationships recovered. Nevertheless, we note that, in broad terms, our results are consistent with clades and relationships previously reported in the literature. For instance, our results support the clade formed by P. trilineata + P. baroni (
Except for
Many of the synapomorphies we identified were first discussed by earlier authors, who highlighted several of them in their studies on the variation of external morphology within P. patagoniensis sensu lato. For example,
The geographical distribution of P. pseudomamba sp. nov. and P. patagoniensis reveals a clear correlation with forested and open habitats, respectively (FAO 2020), with an area of overlap in central Argentina and central Uruguay (Fig.
Philodryas pseudomamba sp. nov. exhibits greater snout-vent length (SVL) and tail length (TL), and higher counts of ventral and subcaudal scales than P. patagoniensis. These traits are strongly associated with arboreal habits in snakes (e.g.,
In the context outlined above, the previously observed geographical variation in the diet of P. patagoniensis sensu lato may offer valuable ecological insight into the morphological differences between P. patagoniensis and P. pseudomamba sp. nov. Both species exhibit a broad diet that includes anurans, lizards, snakes (including instances of cannibalism), small birds and mammals (primarily rodents), and even fish and a wide range of arthropods (e.g., ants, coleopterans) (
Finally, this study re-describes P. patagoniensis and formally describes P. pseudomamba sp. nov., reflecting the molecular and morphological variation previously observed within P. patagoniensis sensu lato. Distinct patterns of colouration, cranial osteology, scale morphology (shape and counts), body proportions, and aspects of natural history, such as diet and habitat use, allow clear differentiation between the two species.
We extend our gratitude to Teresa Hsu and Esther M. Langan from the Division of Amphibians and Reptiles at the UNSM, Smithsonian Institution, for providing photographs of the Philodryas patagoniensis lectotype (USNM 5536). We also thank the staff of the Natural History Museum, London, for sending us photographs of the E. modestus syntypes (BMNH 1946.1.2.84 and 1946.1.8.40). Our sincere thanks go to Julian Faivovich and Santiago Nenda for their support and hospitality during our visit to the herpetological collection of the Museo Argentino de Ciencias Naturales “Bernardino Rivadavia”. We are grateful to David Vera and Eduardo Schaeffer for their assistance in providing photographs of living specimens, and to Juliano Romanzini from Museu de Ciências e Tecnologia da PUCRS for his help with locality data for a specimen used in GeneBank sequences. Rodrigo Calvo kindly took the photos used for Figures
Tables S1, S2
Data type: .zip
Explanation notes: Table SS1. DNA samples utilised in this study. Abbreviations: GB (GenBank accession numbers for each gene); MACN (Museo Argentino de Ciencias Naturales “Bernardino Rivadavia”, Buenos Aires, Argentina); MLP.R (Reptile collection of the Museo de La Plata, Buenos Aires, Argentina). The asterisk indicates the specimens of P. patagoniensis belonging to the new species described in this work. — Table SS2. Raw data for external measurements (HL, SVL, TL, TTL), scale counts (number of ventral and subcaudal scales), and scale formulae for each specimen studied, categorized by morphotype and sex. For specific locality information corresponding to each acronym, refer to File S1. Note that (1) the specimens referred to as studied for pholidosis in File S1 may not necessarily align in degrees of freedom with the data presented here, as explained in the Materials and Methods section, and (2) specimens studied from photographs as the syntypes of E. modestus and the lectotype of P. patagoniensis were examined for external measurements provided in the literature but were not measured by us.
Files S1–S3
Data type: .zip
Explanation notes: File S1. Localities of all specimens used in the present study. Museum acronyms are as follows: BMNH (The Natural History Museum, London, United Kingdom), MACN (Museo Argentino de Ciencias Naturales “Bernardino Rivadavia”, Buenos Aires, Argentina), MCP (Museu de Ciências e Tecnologia da Pontifícia Universidade Católica do Rio Grande do Sul, Rio Grande do Sul, Brazil), MLP.JW (Jorge Williams collection housed at the Museo de La Plata, Buenos Aires, Argentina), MLP.R (Reptile collection of the Museo de La Plata, Buenos Aires, Argentina), and USNM (United States National Museum, Smithsonian Institution, Washington, United States). Websites for citizen science include: ER (Ecoregistros; https://www.ecoregistros.org) and IN (iNaturalist; https://www.inaturalist.org). The abbreviations at the end of each specimen indicate how each specimen was employed (CP: coloration pattern; DI: distribution; EM: external measurements; HP: hemipenes; PH: pholidosis; SK: skull). Acronyms followed by a double asterisk indicate individuals with mixed features between P. patagoniensis and P. pseudomamba sp. nov. [.docx file] — File S2. Morphological characters used in the phylogenetic analysis [.docx file]. — File S3. Matrix employed in the total evidence analysis. The names of the terminals correspond to the first three letters of the specific epithet as follows (in order of appearance in the matrix): VIR: Chlorosoma viridissima, AES: Philodryas aestiva, AGA: P. agassizii, ARG: Xenoxybelis argenteus, BAR: P. baroni, MAT: P. mattogrossensis, NAT: P. nattereri, OLF: P. olfersii, PSE: P. pseudomamba sp. nov., PAT: P. patagoniensis, PSA: P. psammophidea, and TRI: P. trilineata. Other abbreviations refer to localities and museum or GenBank acronyms (see Table SS1) [.txt file].