Research Article |
Corresponding author: Javier Lobón-Rovira ( j.lobon.rovira@hotmail.com ) Academic editor: Uwe Fritz
© 2021 Javier Lobón-Rovira, Werner Conradie, David Buckley Iglesias, Raffael Ernst, Luis Veríssimo, Ninda Baptista, Pedro Vaz Pinto.
This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
Citation:
Lobón-Rovira J, Conradie W, Buckley Iglesias D, Ernst R, Verisimmo L, Baptista N, Vaz Pinto P (2021) Between sand, rocks and branches: an integrative taxonomic revision of Angolan Hemidactylus Goldfuss, 1820, with description of four new species. Vertebrate Zoology 71: 465-501. https://doi.org/10.3897/vz.71.e64781
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Abstract
The taxonomy of Angolan Hemidactylus has recently been revised. However, the lack of fresh material for some groups and regions, has led to the misidentification of some taxa and an underestimation of actual diversity in others. To shed light on the evolutionary history and systematics of Angolan Hemidactylus, we generated a new phylogenetic hypothesis for the group, and updated the taxonomy following an integrative approach. This resulted in the description of four new species (H. pfindaensis sp. nov., H. faustus sp. nov., H. carivoensis sp. nov. and H. cinganji sp. nov.), the reevaluation of two recently described species (H. vernayi and H. paivae) and the synonymization of a recently described species (H. hannahsabinnae). We estimate divergence times for these lineages, providing a preliminary interpretation of their speciation process. Moreover, we suggest and outline 13 Angolan Main Biogeographic Units (AMBUs) in the area, defining a new biogeographic context for future works on Angolan herpetofauna. We now recognize eleven Hemidactylus species in Angola, and we provide here a new morphological key for Angolan Hemidactylus to help with identifications and species assignments in this group.
Angola, biogeography, Gekkota, Hemidactylus, systematics, taxonomy
Angola, the seventh largest African country, is also remarkably biodiverse. Six biomes and 14 terrestrial ecoregions are recognized within its borders, and, in the continent, the country ranks first and second in terms of biomes and ecoregions, respectively (
In the last two decades, Angolan herpetological knowledge has greatly improved, thanks to enhanced social stability and accessibility to previously unexplored regions, which helped to unearth this incredible local biodiversity (
Integrative taxonomic approaches have become prominent to delimit species boundaries in natural groups (
The increment in number of species described in Angola has been most noticeable within the Gekkonidae, in which there has been an increase from 32 to 40 recognized species in the last two years alone (see
Angolan Hemidactylus Goldfuss, 1820 has recently been investigated in detail by
To explore the patterns and levels of diversity within Hemidactylus in Angola, we conducted a thorough and integrative analysis that involved (i) establishing a robust phylogenetic hypothesis based on one mitochondrial and one nuclear molecular marker for 346 individuals, representing all currently described species and potentially independent evolutionary lineages; (ii) a comparative morphological analysis of all lineages recovered in the phylogenetic study; and (iii) an assessment of potential distributions and niche breath for these lineages. This integrative systematic analysis forms the foundation for an updated taxonomy for the group, which includes the description of four new species, the updated description and diagnose of a recently described species, and some nomenclatural adjustments necessary to clarify the taxonomy of Hemidactylus in Angola. Finally, we also present here a morphological dichotomous key that we hope will help researchers for field identification.
Sampling. Since 2011, Hemidactylus specimens and samples were collected across the western half of Angola, a vast region which includes a significant part of the biomes and biogeographic units present in the country (Fig.
A – Topographic map with all Hemidactylus records of Angola (for detail about records see Table S2). B – Map of spatial distribution of Angolan Main Biogeographic Units (AMBUs). Numbers represent: 1 – Mayombe Forest, 2 – Northwestern Forest-Savanna Mosaic, 3 – Northeastern Forest-Savanna Mosaic, 4 – Scarp and Transitional Zone, 5 – Angolan Highlands, 6 – Angolan Miombo Woodlands, 7 – Zambezian Miombo Woodlands, 8 – Baikiaea Woodlands, 9 – Mopane Woodlands, 10 – Semi-arid Savannas, 11 – Namib Desert, 12 – Zambezian Flooded Grasslands and 13 – Mangroves (for AMBUs detail specification see Table S1).
Molecular data. We used phylogenetic analysis to explore and support the morphological findings. We generated 228 new Hemidactylus sequences from individuals across Angola. Mitochondrial gene ND2 (1041 bp) and partial fragments of the nuclear gene RAG1 (1035 bp) were generated for most individuals (Table S2). DNA was extracted using EasySpin Genomic DNA Tissue Kit, following the manufacturer’s protocols. PCR amplifications were performed using the following primers (ND2: MetF1 and TRP R3 H5540, Macey et al. 2007; RAG1: RAG1skink F2 and RAG1skink R1200, Portik et al. 2010) and concentration (5 µl QIAGEN PCR MasterMix, 0.4 µl each Primer, each Primer, 3.2 µl H2O and 2 µl DNA (DNA elution were adjust to extraction results). PCR reactions were adjusted as follows: for ND2, initial denaturing step at 95°C for 15 min, followed by 5 cycles of 95°C for 30 s, 64°C for 20 s, and 72°C for 60 s (decreasing –0.5°C/cycle), followed by 35 cycles of 95°C for 30 s, 64°C for 20 s, and 72°C for 60 s, with a final extension at 60°C for 10 min; for RAG1, initial denaturing step at 95°C for 15 min, followed by 40 cycles of 95°C for 30 s, 50°C for 30 s, and 72°C for 60 s, with a final extension at 60°C for 10 min. For phylogenetic comparisons we combined the newly generated sequences with 219 previously published Hemidactylus sequences, deposited in GenBank, of West and Central African Hemidactylus species as well as representatives from the other major clades of the genus (
Phylogenetic analysis and network analysis. Bayesian Inference (BI) and Maximum Likelihood (ML) analyses were performed using sequence data of 346 specimens in three subsets: ND2, RAG1, and combined ND2+RAG1. The partitioning schemes were determined using PartitionFinder2 (
Average uncorrected pairwise distances (ND2) between selected Angolan Hemidactylus taxa, closely related species and outgroups. Bold numbers represent mean divergence within species. * represents lower than 10% p–distance between species.
Species | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 18 |
1. Cyrtodactylus angularis | – | |||||||||||||||||
2. Cyrtodactylus ayeyarwadyensis | 27.44 | – | ||||||||||||||||
3. Dravidogecko janakiae | 29.43 | 29.53 | – | |||||||||||||||
4. H. ansorgii | 31.73 | 30.01 | 31.48 | 5.03 | ||||||||||||||
5. H. bayonii | 32.99 | 30.83 | 30.85 | 17.55 | 2.47 | |||||||||||||
6. H. benguellensis | 32.50 | 30.61 | 30.38 | 17.27 | 16.71 | 3.84 | ||||||||||||
7. H. gramineus | 33.06 | 32.24 | 32.66 | 16.84 | 16.26 | 16.06 | – | |||||||||||
8. H. longicephalus | 31.41 | 30.41 | 31.55 | 17.87 | 18.61 | 16.34 | 16.81 | 4.59 | ||||||||||
9. H. mabouia | 34.27 | 31.84 | 31.59 | 26.89 | 27.24 | 27.22 | 30.62 | 27.19 | 2.06 | |||||||||
10. H. mercatorius | 34.40 | 31.96 | 32.63 | 26.90 | 28.11 | 28.35 | 30.34 | 28.67 | 5.90 | 5.05 | ||||||||
11. H. muriceus | 31.69 | 28.78 | 31.57 | 17.58 | 17.28 | 16.23 | 16.47 | 16.73 | 27.66 | 27.78 | 8.54 | |||||||
12. H. nzingae | 30.75 | 29.60 | 31.39 | 17.46 | 15.75 | 17.63 | 8.42* | 17.67 | 28.24 | 28.56 | 16.30 | 0.23 | ||||||
13. H. paivae | 31.91 | 29.27 | 31.50 | 17.31 | 18.35 | 16.33 | 16.11 | 9.66* | 27.31 | 27.68 | 16.49 | 18.02 | 3.01 | |||||
14. H. vernayi | 33.99 | 30.94 | 30.37 | 17.92 | 14.18 | 15.30 | 14.76 | 18.13 | 27.18 | 28.29 | 16.47 | 15.77 | 17.65 | 1.52 | ||||
15. H. cinganji sp. nov. | 31.80 | 29.61 | 29.75 | 17.87 | 16.21 | 11.64 | 14.55 | 16.47 | 27.18 | 27.82 | 15.97 | 15.88 | 15.86 | 15.89 | 1.57 | |||
16. H. pfindaensis sp. nov. | 32.87 | 30.56 | 30.84 | 16.42 | 15.17 | 14.74 | 14.51 | 16.96 | 27.80 | 27.79 | 15.53 | 14.91 | 16.58 | 14.36 | 14.72 | 7.70 | ||
17. H. carivoensis sp. nov. | 32.79 | 29.71 | 30.62 | 16.85 | 15.78 | 12.48 | 15.81 | 17.24 | 26.86 | 27.40 | 14.93 | 16.42 | 17.22 | 15.83 | 12.51 | 15.06 | 0.84 | |
18. H. faustus sp. nov. | 30.85 | 28.64 | 32.47 | 19.28 | 18.29 | 16.68 | 18.15 | 17.67 | 28.88 | 29.20 | 17.32 | 17.85 | 18.14 | 18.47 | 16.68 | 16.57 | 17.01 | 0.36 |
Species trees and divergence times calibration. We estimated a time-calibrated species tree Startbeast using BEAST v2.6.3. We used a pruned dataset (selected target species) to reduce missing data and avoid unrealistic estimation. Best-fit substitution models were obtain using bmodel-test package implemented in BEAST2 (
Morphology. For this study, we examined newly collected material from different expeditions, and deposited at different museums listed before (see Table S2). High quality photographs of specimens of different Hemidactylus species were also analyzed. We examined 132 specimens of Angolan Hemidactylus and compared these to published material by
Habitat assessment. The currently available published information on Angola’s biogeographical characteristics is limited and often authors have relied on the work of
Species assessment. The species delimitation followed in this work is based on an integrative approximation (Vieites et al. 2008;
Phylogenetic relationships and network analyses. Both the Bayesian Inference and Maximum Likelihood analyses are largely concordant, yielding a well-supported topology, as they did with the single mtDNA (not shown). Phylogenetic analyses confirm the Western and Central African Hemidactylus relationship proposed by
Bayesian Inference (BI) phylogenetic tree based on ND2+RAG1 concatenated data, with Maximum Likelihood (ML) support overlaid. Numbers above the key nodes indicates BI posterior probability (≥ 0.90 were considered supported), while below the key nodes indicate ML bootstrap values (≥ 75% were considered supported). Major clades are marked with a thick vertical line.
Bayesian Inference (BI) phylogenetic tree based on ND2+RAG1 concatenated data, with Maximum Likelihood (ML) support overlaid. Numbers above the key nodes indicates BI posterior probability (≥ 0.90 were considered supported), while below the key nodes indicate ML bootstrap values (≥ 75% were considered supported). Major clades are marked with a thick vertical line.
Firstly, a large clade sister to the others includes all the members of the H. mabouia-complex, which differs >26 % (ND2 p-distance) from all remaining Angolan congeners. The latter can be subdivided in six main Angolan groups (in color in Fig.
Another main group corresponds to the H. benguellensis-group, sister to the H. bayonii-group and related species (PP: 0.86, BS: 90). This H. benguellensis-group includes three subclades, all of them well differentiated (≥11.64% minimum ND2 p-distance between subclades, see Table
Four additional main groups could be differentiated in the phylogenetic tree (Fig.
Finally, an independent clade was recovered from Pungo Andongo, without well-supported phylogenetic relationships (PP: 0.54, BS: 45; Fig.
The median-joining network for the RAG1 nuclear marker (Fig.
A – Species tree and Bayesian chronogram of divergences among Angolan Hemidactylus. Branches with posterior probability > 0.9 are denoted by asterisks (*) at relevant nodes. Blue bars depict 95% HPD intervals on estimated divergence date (95% HPD: High Probability Density). B – Median-joining nuclear allele network showing the relationships between Angolan Hemidactylus species, inferred from RAG1 nuclear gene. In all network, circle frequency of alleles and small lines represent mutational steps.
The topology recovered in the time calibrated species tree is congruent with the phylogenetic tree from the ML and BI concatenated analyses. The Time to the Most Recent Common Ancestor (TMRCA) fort the Angolan Hemidactylus is dated to ~11 mya (95% HPD: 6.2–15.9 mya). Most of the TMRCAs for the lineages studied fell also within the Miocene, with the exception for H. bayonii and H. vernayi (~4.43 mya, 95% HPD: 1.6–8.5 mya), H. benguellensis and one of the lineages described here as a new species (~4.42 mya, 95% HPD: 1.7–8.1 mya), and H. longicephalus and H. paivae (~4.5, 95% HPD: 1.8–8.5 mya), which were all of Pliocene age (Fig.
Morphology. Results of the morphological analysis are summarized in Table
Comparison between the different Angolan Hemidactylus (excluding H. mabouia and including H. gramineus from DRC). Measurements are represented in mm (average and standard deviation), based on newly collected material for this work with exception of H. nzingae, H. gramineus and H. paivae, where morphological measurements were compiled from information available in
Species | H. faustus sp. nov. | H. pfindaensis sp. nov. | H. carivoensis sp. nov. | H. benguellensis | H. cinganji sp. nov. | H. longicephalus LINEAGE 1 | H. longicephalus LINEAGE 2 | H. paivae | H. bayonii | H. vernayi | H. gramineus | H. nzingae |
Specimens | n=10 | n=4 | n=9 | n=12 | n=2 | n=6 | n=9 | n=18 | n=6 | n=25 | n=2 | n=12 |
SVL | 39.38 ± 3.35 | 45.54 ± 3.12 | 38,18 ± 5,16 | 49.66 ± 8.12 | 48.72 ± 5.19 | 46.21 ± 8.76 | 47.30 ± 3.09 | 57.31 ± 2.19 | 36.29 ± 3.46 | 32.52 ± 4.07 | 36.65±4.03 | 44.28 ± 3.88 |
TL | – | 32.93 | 36,8 ± 7,64 | 40.23 ± 8.65 | 42.77 ± 0 | 44.20 ± 6.94 | 48.52 ± 1.94 | 63.05 ± 7.14 | 30.06 ± 11.11 | 25.92 ± 4.19 | 34.40±0.99 | 40.33 ± 3.48 |
TRL | 16.83 ± 2.51 | 17.85 ± 3.76 | 15,82 ± 1,92 | 21.94 ± 5.93 | 21.33 ± 4.13 | 19.25 ± 4.29 | 18.98 ± 0.09 | 21.45 ± 2.89 | 15.02 ± 2.62 | 13.95 ± 1.88 | 15.85±2.33 | 19.41 ± 2.58 |
BW | 7.44 ± 0.93 | 7.43 ± 0.41 | 6,99 ± 1,92 | 10.056 ± 1.83 | 10.14 ± 0.50 | 8.28 ± 3.26 | 8.5 ± 0.81 | 9.81 ± 0.47 | 6.69 ± 0.78 | 6.12 ± 1.26 | 5±0.14 | 7.27 ± 1.29 |
FL | 9.10 ± 1.36 | 6.99 ± 1.35 | 5,79 ± 0,98 | 7.32 ± 1.81 | 7.86 ± 1.30 | 6.24 ± 1.53 | 8.57 ± 0.12 | 7.12 ± 1.14 | 5.57 ± 0.81 | 5.89 ± 1.23 | 4.70±0.28 | 6.06 ± 0.77 |
CL | 6.32 ± 0.54 | 8.03 ± 1.73 | 6,75 ± 1,18 | 7.74 ± 1.47 | 8.39 ± 1.98 | 7.11 ± 0.76 | 5.47 ± 0.92 | 7.21 ± 1.47 | 6.30 ± 0.63 | 4.90 ± 1.18 | 5.55±0.21 | 7.03 ± 0.68 |
HL | 11.62 ± 1.09 | 13.19 ± 1.40 | 11,10 ± 0,69 | 14.25 ± 2.86 | 12.99 ± 2.62 | 13.12 ± 2.09 | 14.02 ± 0.66 | 14.55 ± 0.59 | 10.13 ± 1.49 | 9.59± 0.79 | 10.5±0.71 | 12.18 ± 0.27 |
HW | 8.22 ± 0.79 | 8.65 ± 0.85 | 6,81 ± 1,10 | 9.72 ± 1.73 | 9.57 ± 0.84 | 8.60 ± 1.55 | 9.38 ± 0.52 | 10.02 ± 0.62 | 6.75 ± 0.56 | 6.01 ± 0.98 | 6.35±0.49 | 8.11 ± 0.57 |
HH | 4.95 ± 0.71 | 5.26 ± 0.28 | 4,21 ± 0,69 | 5.52 ± 0.97 | 6.32 ± 0.58 | 4.93 ± 0.99 | 5.65 ± 0.27 | 6.12 ± 0.28 | 4.37 ± 0.49 | 4.04 ± 0.52 | 4.25±0.49 | 5.08 ± 0.55 |
OD | 2.87 ± 0.29 | 2.81 ± 0.18 | 2,68 ± 0,36 | 2.97 ± 0.39 | 3.14 ± 0.13 | 2.97 ± 0.48 | 3.02 ± 0.11 | 3.21 ± 0.18 | 2.42 ± 0.14 | 2.25 ± 0.29 | 2.10±0.42 | 2.81 ± 0.34 |
NE | 3.39 ± 0.49 | 3.81 ± 0.47 | 3,38 ± 0,51 | 4.52 ± 0.78 | 4.18 ± 0.20 | 4.13 ± 0.64 | 4.45 ± 0.36 | 4.54 ± 0.57 | 2.88 ± 0.67 | 2.68 ± 0.35 | 2.95±0.35 | 4.26 ± 0.68 |
SE | 4.6325 ± 0.31 | 5.32 ± 0.21 | 4,46 ± 0,70 | 6.03 ± 1.13 | 5.38 ± 0.61 | 5.29 ± 0.79 | 6.09 ± 0.85 | 5.80 ± 0.51 | 4.02 ± 0.71 | 3.58 ± 0.45 | 4.25±0.07 | 5.21 ± 0.34 |
EE | 3.29 ± 0.36 | 3.53 ± 0.21 | 2,91 ± 0,39 | 3.89 ± 0.68 | 3.85 ± 0.48 | 3.21 ± 0.63 | 3.66 ± 0.46 | 3.83 ± 0.27 | 2.9 ± 0.46 | 2.75 ± 0.39 | 2.75±0.21 | 3.56 ± 0.23 |
EH | 0.99 ± 0.15 | 0.84 ± 0.25 | 1,73 ± 2,67 | 1.25 ± 0.55 | 1.17 ± 0.42 | 0.92 ± 0.25 | 0.98 ± 0.09 | 0.95 ± 0.37 | 0.69 ± 0.19 | 0.57 ± 0.12 | 0.7±0.0 | 1.07 ± 0.17 |
IN | 1.56 ± 0.24 | 1.36 ± 0.05 | 1,21 ± 0,20 | 3.75 ± 6.35 | 1.42 ± 0.12 | 1.41 ± 0.21 | 1.59 ± 0.15 | 1.63 ± 0.18 | 1.27 ± 0.12 | 1.22 ± 0.18 | – | – |
OI | 3.97 ± 0.40 | 3.9 ± 1.41 | 3,51 ± 0,61 | 4.20 ± 0.66 | 4.81 ± 0.04 | 3.47 ± 0.72 | 4.68 ± 0.17 | 4.85 ± 0.04 | 3.3 ± 0.35 | 2.98 ± 0.49 | – | – |
Precloacal–Femoral Pores | 17–19 | 8 | 15–22 | 23–33 | 26–28 | 5–11 | 6 | 6–8 | 4–9 | 4–6 | 8 | 7–8 |
Post–cloacal (tail) spurs | 1/1 | 1/1 | 1/1 | 1–4/1–4 | 1–2/1–2 | 0–1/0–1 | 1–1/1–1 | – | 1/1 | 1–2/1–2 | – | – |
Scales across belly | 29–32 | 28–30 | 32–38 | 33–41 | 30–32 | 28–37 | 28–36 | 28–34 | 25–32 | 32–39 | 23–25 | 22–27 |
Dorsal tubercles row | 15–17 | 11–12 | 12–18 | 13–18 | 15 | 13–17 | 13–16 | 13–16 | 15–16 | 11–16 | 12–14 | 16–21 |
Supralabials (right/left) | 9/9 | 10/10 | 11/10–11 | 10–11/10–11 | 9/9 | 10–12 | 10–12 | 10–12/10–12 | 8–9/9–10 | 9–10/9–10 | 10/9–0 | 10–11/10–11 |
Infralabials (right/left) | 8/8 | 8–10/9–10 | 9/9–10 | 9–10/8–10 | 7–9/8 | 9–10 | 9–10 | 9–10/8–10 | 7–9/7–8 | 7–8/7–8 | 8–9/8–9 | 8–9/8–9 |
Subcaudals size | Small (< 1⁄4 tail width) | Small (< 1⁄4 tail width) | Small (< 1⁄4 tail width) | Small (< 1⁄4 tail width) | Small (< 1⁄4 tail width) | Small (< 1⁄4 tail width) | Small (< 1⁄4 tail width) | Small–Medium | Small (< 1⁄4 tail width) | Small (< 1⁄4 tail width) | Small (< 1⁄4 tail width) | Small (< 1⁄4 tail width) |
# Granular scales between tubercles | 2–3 | 4–5 | 2–3 | 2–5 | 2–3 | 3–6 | 3–4 | 3–9 | 2–4 | 2–4 | 2–3 | 2–3 |
Lamellae 1st finger | 5–6 | 6–5 | 5 | 6 | 5–6 | 5–6 | 6 | 5–8 | 5–6 | 5–6 | 5 | 5–7 |
Lamellae 4th finger | 7 | 7 | 6–7 | 6–8 | 7 | 7–8 | 7–8 | 8–9 | 7 | 7 | 7 | 6–8 |
Lamellae 1st toe | 5–6 | 5–6 | 5 | 5–7 | 6 | 5–7 | 5–6 | 6–7 | 6 | 5–6 | 5 | 5–7 |
Lamellae 4th toe | 9–8 | 7–8 | 9 | 8–9 | 8 | 8–10 | 8–19 | 9–11 | 8–10 | 7–8 | 7 | 9 |
Habitat assessment (Fig.
In the southern block of the Angolan Highlands, we found one population, recently ascribed to H. benguellensis, but which appears to be highly adaptable and variable in morphology. Furthermore, some populations ascribed to this taxon have also been found on the coastal plain, scarp and plateau and spanning five additional different ecoregions. However, one different form was only found on the original topotypic locality of H. benguellensis, a mountainous region on the interface between the Scarp and Transitional Zone and the northern block of the Angolan Highlands and is apparently specialized to rupicolous habitats. Finally, a further unique and undescribed form was found in the inselbergs of Pungo Andongo. This locality is a well-known and singular geomorphologic feature, and although within the broader Angolan Miombo Woodlands, this potentially new taxon exhibited a high degree of specialization to its unique environment being ground-dwelling and rupestrine.
Hemidactylus nzingae was described by
Morphological variability found within Hemidactylus nzingae. A–G: body, in dorsal view, showing variability pattern present in specimens of H. nzingae (Tissue codes FKH0282, FKH0289, FKH0299, PEM R19895, KH0060, PEM R23991 and KH0061, respectively). H–M: lateral and dorsal view of the head in H. nzingae (Tissue codes: FKH0060 (H–I), FKH0282 and FKH0289 (L–M) (see Table S2 for detailed voucher information). Photographs by Pedro Vaz Pinto (A–C, E, G, H–M) and Werner Conradie (D, F).
Finally, the a sister species to H. nzingae was subsequently described from the Democratic Republic of the Congo as H. gramineus (
Hemidactylus bayonii was described by
Hemidactylus vernayi was described by
Morphological variability of head and body found within Hemidactylus bayonii. A–H: lateral view of head and dorsal view of the body showing robustness and pattern variability in genetically identified specimens of H. bayonii (Catalog Codes: FKH0052, FKH0053, FKH0054, FKH0220, FKH0055, FKH0221, PEM R25190 and PEM R26514, in order) (see Table S2 for detailed voucher information). Photographs by Pedro Vaz Pinto (A–F) and Werner Conradie (G–H).
Interestingly, specimens collected from Hanha (paratype locality of H. vernayi, see Fig.
A – dorsal view in life of Hemidactylus vernayi (MNCN 50541), B – habitat of H. vernayi, C – updated records of the H. bayonii–group and H. nzingae–group (blue color represents H. bayonii, purple H. vernayi, and green H. nzingae; circles represent genetically confirmed records, while triangles represent historical or non-genetically assigned records based on
Based on both phylogenetic hypothesis (BI and ML), H. vernayi is sister species to H. bayonii, presumably a relic in arid coastal ecosystems (Fig.
ANGOLA • 2 ♀; Namibe Prov., Santa Marta, Lucira; –13.87861°, 12.42444°; 48 m a.s.l.; 24 May 2019; Pedro Vaz Pinto; FKH0226–7 and MNCN 50538 • 3 ♂; same collecting data as previous material; FKH0228, MNCN 50539, FKH0232 • 4 ♀, 1 ♂ same collecting data as previous material; 6 Jul. 2019; Pedro Vaz Pinto and Javier Lobón-Rovira; FKH0263–6, MNCN50533 • 1 ♀ juv.; same collecting information as previous material; FKH0268 • 2 ♀; Bentiaba; –14.17596°, 12.44689°; 150 m a.s.l.; 15 Feb. 2020; Pedro Vaz Pinto and Javier Lobón-Rovira; MNCN 50541 and ZMB 90448 • 2 ♂; same collecting information as previous material; FKH0417 and ZMB 90449 • 3 ♂; Lucira; September 1956; Charles Koch; TM 24447, 24450–1 • 1 ♂ and 1 ♀; Benguela Prov., Hanha; –12.24245°, 13.71399°; 39 m a.s.l.; 16 Nov. 2019; Pedro Vaz Pinto; ZMB 90450–1.
Hemidactylus vernayi is readily distinguished from non-Angolan congeners by sharing the same distinctive characters as H. bayonii (see
In life (specimen FKH0417; Fig.
This species is considered the sister species of H. bayonii, so far only known to occur along the arid coast from Bentiaba in northern Namibe Province, northwards to Hanha in coastal Benguela Province (Fig.
Hemidactylus vernayi is an arid-adapted species, found foraging among small shrubs in arid coastal rocky semi-desert environments on the northern fringes of the Kaokoveld desert, and present also in vegetated valleys cutting through coastal semi-arid savannas. The species occurs along a coastal strip within the Semi-Arid Savanna AMBU, a region strongly influenced by the Namibe fog-belt (Cernak et al. 2012;
Hemidactylus paivae:
Based on both phylogenetic hypothesis (BI and ML), Hemidactylus pfindaensis sp. nov. is the sister group of a well-supported clade within the H. bayonii/nzingae-group, and represents a northern clade present in the Tropical and Subtropical Moist Forests Biome. Due to the lack of accurate morphological assessments within western African Hemidactylus until
ANGOLA • 1 ♀; Cabinda Prov., Chiloando; –5.12083°, 12.36667°; 95 m a.s.l.; 16 Mar. 2019; Pedro Vaz Pinto; FKH0178.
ANGOLA • 1 ♂; same collecting information as the holotype; without tail; MNCN 50537 • 1 ♂; Uíge Prov., Macocola; –7.01802°, 16.07658°; 952 m a.s.l.; 25 Sept. 2018; Pedro Vaz Pinto; without tail; FKH 0044 • 1 ♂; Uíge Prov., Serra do Pingano; –7.68451°, 14.92978°; 957 m a.s.l.; 31 Oct. 2014; Raffael Ernst; MTD 48932.
A medium sized Hemidactylus, with SVL of 45.53 mm (mean) with moderate long snout, 10 supralabials and 8–10 infralabials (Fig.
Holotype of Hemidactylus pfindaensis sp. nov. (FKH0178) from Chiloando, Cabinda Province, Angola. A – Dorsal and ventral view of body. B – Detail of head in lateral, dorsal and ventral views (from top to bottom). C – Detailed of left toes and right fingers (from left to right). Photos by Pedro Vaz Pinto.
Hemidactylus pfindaensis sp. nov. differs from the other non-Angolan, western and central African congeners, based on the same characteristics of the other Angolan species (
Measurements and meristic characters of the holotype are presented in Table S5. Adult female with a snout-vent-length (SVL) of 49.09 mm, a regenerated tail length (TL) of 32.93 mm. Body slender, nape distinct. Head slightly narrower than the body and largely elongated (HW/HL 0.62). Canthus rostralis not prominent, but well-marked. Eye diameter (2.96 mm), with vertical pupil and crenulated margin. Supraciliar scales small and slightly pointed. Ear height (0.93 mm). Ear to eye distance slightly larger than orbit diameter (3.6 mm). Snout rounded. Frontal scales granular and larger than occipital scales. Occipital scales granular with lateral conical a large tubercle scale. Rostral wider than deep (2.21 vs. 1.04 mm, respectively). Rostral semidivided anterodorsally, in contact with 1st supralabial, nostril, prenasal and one internasal scales. 11 supralabials and 11 infralabials. First supralabial in contact with the nostril. Nostril circular rounded by rostral, supranasal, two postnasal and first supralabial. Postnasals larger than supranasal. Nostril in direct contact with the rostral and 1st supralabial. One row of scales between supralabials and the orbit. Mental large and markedly triangular, with two large rectangular postmental scales in broad contact posteriorly to the mental. 5 post-postmental scales, composed by post-postmental slightly smaller than postmental scales in contact with postmentals, 1st and 2nd infralabials, and 3 small post-postmental in contact with postmental scales. Gular scales and granular smaller than ventral scales. Between the gular scales and infralabials, a row of enlarged scales is present, decreasing in size until the 5th infralabial where they become the same size as the gular scales.
Body relatively slender and elongated (TRL/SVL 0.45). Ventral scales about double size than dorsal scales, with 28 scales across the belly. The dorsal pholidosis present heterogenous conical, granular scales interspersed by 12 keeled dorsal tubercle rows at midbody. Dorsal tubercle rows are separated by 4–5 granular scales. Tubercle scales reach the posterior part of head and the nape, where tubercle scales lose the keeling progressively. Base of the tail with four large keeled dorsal tubercle rows dorsally and subcaudal scales small, about one fourth of the tail width. Regenerated tail has no presence of tubercle scales, having largely homogeneous scales along and across the tail. Precloacal scales enlarged and one well-developed postcloacal spurs on each side.
Fore- and hindlimbs relatively short, stout; forearm short (FL/SVL 0.17); tibia short (CL/SVL 0.18). Short digits and clawed. All digits of manus and pes indistinctly webbed. Scansors beneath each toe equally divided, with the exception of 1st and terminal scansor undivided. 4th and 5th toes with 2 and 3 undivided terminal scansors, respectively. Scansors beneath each finger equally divided, with the exception of 1st and two terminal scansor undivided. 1st and 5th fingers with 3 undivided terminal scansors. Number of scansors: 5-7-7-8-7 (right manus), 5-7-8-8-9 (right pes). Relative length of digits: V < IV=III=II > I (right manus); V < IV=III > II > I (right pes).
Variation in scalation and body measurements of the paratypes of H. pfindaensis sp. nov. are reported in Table S5. All the material analyzed agrees entirely with the holotype description. However, paratype FKH0179, shows undivided rostral scales and MTD 48932, 3rd and 4th supralabials semi-fused at the base.
In life (specimen FKH0178; Fig.
A – Dorsal view of Hemidactylus pfindaensis sp. nov. (Holotype, FKH 0178). B – habitat of H. pfindaensis sp. nov. C – records of H. pfindaensis sp. nov. (yellow circles represent records of H. pfindaensis sp. nov.; star depicts the type locality). Photos by Pedro Vaz Pinto (A) and Luke Verburgt (B).
The name “pfindaensis” derives from the local word “pfinda” which in Kikongo – the main language used in Uíge Province and northwestern Angola – refers to a “gallery forest” or a “continuous block of thick forest”, the main habitat type associated with the species.
A typical forest gecko, this species has been found in two sites of northern Angola, both in Uíge Province, and on a third site in the enclave of Cabinda. Its known presence north and south of the Congo River, suggests a much larger distribution range, that will likely extend to Democratic Republic of the Congo and Republic of the Congo, and possibly also into Gabon. In Angola, it will also likely be present in the Mayombe Forest and Northeastern Forest-Savanna Mosaic. However, due to limited number of records we cannot calculate the EOO and thus we regard the conservation status of the species as Data Deficient, and further studies are suggested to better assess its full distribution and conservation status. Although central African forests are currently threatened by deforestation and human encroachment, the occurrence of this species across a large geographical and altitudinal range, suggests that it is likely common, yet further studies are necessary to evaluate its conservation status.
Hemidactylus pfindaensis sp. nov. appears to be a species strongly associated with moist evergreen forests. Specimens were collected at various altitudes, both near sea level and above 900 m a.s.l., but always in moist gallery forest, within the Northwestern Forest-Savanna Mosaic. All specimens were found foraging at night on tree trunks of well-developed trees, approximately 1–2 m above ground. Although never found hiding, it seems likely that it finds shelter under tree bark.
Hemidactylus longicephalus was described in vague terms by
Based on the newly assigned H. longicephalus, this species represents a large size gecko with maximum SVL of 60.08 mm (mean=46.6), with reduced number of precloacal-femoral glands (6–11 vs. 23–33 in H. benguellensis group).
Records of Hemidactylus longicephalus species complex. Light orange color represents H. longicephalus Lineage 1; dark mustard represents H. longicephalus Lineage 2; pink represents H. paivae. Circles represent genetically assigned records, while triangles represent historical or morphologically assigned records by
Our phylogenetic analysis reveals three well-supported lineages within this group. Two closely related western lineages across woodlands, thickets and forests present in the Scarp and Transitional Zone, and including the sample from São Tomé, and a third lineage mostly found on the plateau in the Angolan Miombo Woodlands represented by H. paivae. However, a low p-distance in ND2 was observed within this group (8.99% between both western clades and 8.71% and 10.21% between the plateau clade and the two western clades, respectively). Moreover, the meristic analysis barely support differentiation between these three lineages, with large level of overlap among material examined (see Table
A large series of H. longicephalus and H. paivae provided in this work, show a large overlap between these closely related species (Table
A large sized Hemidactylus, with SVL of 57.31 mm (mean). Hemidactylus paivae differs from the other non-Angolan western and central Africa congeners based on the same characteristics as H. longicephalus (
A – PCA plots of the first principal component (PC 1) versus the second (PC 2) of morphometric analysis for H. longicephalus–complex. Light brown polygon denote distribution within PCAs of H. longicephalus and pink polygon H. paivae. B – Statistical distribution of morphometric parameters examined by ANOVA. Significant t–values are highlighted by an asterisk (*). For abbreviations see Material and Methods section
Hemidactylus benguellensis was described by
The Hemidactylus benguellensis-group represents variable forms mostly in overall size (mean SVL=46.59 mm; standard deviation 8.34; based on adult material only) and widely distributed, spanning from the central Angolan highlands and southern plateau to the coastal arid lowlands in Namibe Province. This group, which until the present work comprised only the species H. benguellensis, is characterized by a large number of precloacal-femoral pores (higher than 23), and absence of large subcaudal scales characteristic of H. mabouia (Table
Hemidactylus benguellensis:
Hemidactylus benguellensis:
The original description of H. benguellensis by Bocage make reference to “… species with 16 to 18 longitudinal series, 9 upper labials and 9 lower and 26 pre-cloacal and femoral pores, 13 on each side in a continuous series”. These characters were later corroborated by
In February 2020, a survey was conducted at Ebanga, Benguela Province, about 40 kilometers south of Cahata, the original type locality (
A – From top, dorsolateral view of Hemidactylus cinganji sp. nov. (FKH0435), H. benguellensis (FKH0413) and H. carivoensis sp. nov. (MNCN 50543); B – records of H. benguellensis–group (purple color represents records of H. cinganji sp. nov.; blue H. benguellensis; dark green H. carivoensis sp. nov.; circles represent genetically assigned records, while triangles represent historical or non-genetically assigned records by
Interestingly, our phylogenetic analysis revealed a genetically separate lineage well-differentiated from the material assigned to H. benguellensis by
Based on field observations, the material assigned to H. benguellensis by
Furthermore, the material recently assigned to H. benguellensis by
ANGOLA • 1 ♂; Benguela Prov., Ebanga; –12.77082°, 14.77102°; 1916 m a.s.l; 22 Feb. 2020; Pedro Vaz Pinto and Javier Lobón-Rovira; FKH0439.
ANGOLA • 1 ♂; Benguela Prov., Passe; –12.66774°, 14.01607°; 828 m a.s.l; 13 Feb. 2020; Pedro Vaz Pinto and Javier Lobón-Rovira; FKH0413.
A large sized Hemidactylus, with maximum SVL of 55 mm (mean) and maximum width of 10.5 mm (Fig.
Hemidactylus cinganji sp. nov. can be distinguished from other non-Angolan western and central Africa congeners based on the same characteristics of H. benguellensis (
Measurements and meristic characters of the holotype are presented in Table S6. Adult male with a snout-vent-length (SVL) of 45.05 mm and a tail length (TL) slightly smaller than SVL 42.07 mm. Body slender, nape distinct. Head slightly narrower than the body and moderate head length (HW/HL 0.72). Canthus rostralis not prominent. Eye diameter (3.05 mm), with vertical pupil and crenulated margin. Supraciliar scales small and rounded. Ear height (1.47 mm). Ear to eye distance slightly larger than orbit diameter (4.17 mm). Snout rounded and pointed. Frontal scales granular and larger than occipital scales. Occipital scales granular interspersed with large number of smooth and keeled tubercle scales from eyes to nape. Rostral undivided, in contact with 1st supralabial, nostril, supranasal and one internasal scales. 9 supralabial and 8–9 infralabials. First supralabial and rostral in direct contact with the nostril. Nostril circular rounded by rostral, 1st supralabial, supranasal, and two postnasals. One row of scales between supralabials and the orbit. Mental large, triangular and rounded posteriorly, with two larges rectangular postmental scales in broad contact posteriorly to the mental. 2 post-postmental scales, in contact with post-postmental slightly smaller than postmental scales and 1st and 2nd infralabials. Gular scales slightly smaller than ventral scales and granular.
Body relatively robust and slightly elongated (TRL/SVL 0.40). Ventral scales widely larger than dorsal scales, with 32 scales across the belly. The dorsal pholidosis present heterogenous conical, granular scales interspersed by 15 strongly keeled dorsal tubercle rows of at midbody. Dorsal tubercle rows are separated by 3 granular scales. Tubercle scales reach the posterior part of the eye region where tubercle scales remain keeled. Tail with six strongly keeled dorsal tubercles rows dorsally and subcaudal scales medium sized, interspersed by 11 horizontal whorls of keeled scales on the original portion of the tail. Regenerated portion of the tail presents homogeneous scales all around the surface without tubercle scales. 27 precloacal-femoral pores enlarged and 2 well-developed postcloacal spurs on each side.
Fore- and hindlimbs relatively short, stout; forearm short (FL/SVL 0.15); tibia short (CL/SVL 0.16). Short digits strongly clawed. All digits of manus and pes indistinctly webbed. Scansors beneath each toe composed by 1st and terminal scansor undivided with the exception of 4th and 5th toes with 3 and 2 undivided terminal scansor, respectively. Scansors beneath each finger equally divided, with exception of 1st and last terminal scansor undivided. Number of scansors: 5-5-6-7-6 (right manus), 6-8-8-9-7 (right pes). Relative length of digits: V < IV=III > II > I (right manus); V < IV < III > II > I (right pes).
Variation in scalation and body measurements of the holotype and paratype of H. cinganji sp. nov. are reported in Table S6.
In life (holotype FKH0439; Fig.
The name “cinganji” is a widespread traditional word used in Angolan local languages that represents an ancestral spiritual entity that reincarnates assuming different physical forms in different places and occasions. This name is suitable as the new species corresponds to a taxon that was first described under a different name, then became lost and now resurfaces after its original name had been hijacked by a surrogate sister-species. The species epithet is used as a neuter singular noun in opposition to the generic name.
The full distribution range of the species remains unknown, even though so far it has only been confirmed to occur in the interior of Benguela Province, from Cahata to Passe and Ebanga, above 800 m a.s.l. Due to poor sampling and few material confirmed to belong to this species, we cannot calculate the EOO and thus we regard the conservation status of the species as Data Deficient. Additional data will need to be collected to address its conservation status.
Hemidactylus cinganji sp. nov exhibited a rock-dwelling behavior associated to large granitic boulders in mountainous regions from medium to high altitudes. The confirmed records fall in Benguela’s transition region between the Scarp and Transitional Zone and the Angolan Highlands. Both specimens were collected at night while foraging in large vertical granitic walls, one on a mountain cliff and the other on a boulder overhanging a forest stream. However, due to the poor sampling of this species, its natural history and real habitat requirements remain uncertain.
Hemidactylus carivoensis sp. nov. represents a new form genetically divergent from the two related species, with ND2 p-distance of 12.51% from H. cinganji sp. nov. and 12.48% from H. benguellensis (Table
ANGOLA • 1 ♀; Benguela Prov., Fazenda Carivo; –13.19167°, 13.41806°; 382 m a.s.l.; 15 Jul. 2018; Pedro Vaz Pinto; good condition with a ventral-lateral incision for the removal of liver sample and some torn skin in the ventrum; FKH0033.
ANGOLA • 1 ♀, juv.; Benguela Prov., Santa Maria, Praia do Meva; –13.19167°, 12.99139°; 287 m a.s.l.; 12 Nov. 2016; Pedro Vaz Pinto and William R. Branch; PEM R24218 (field number AG 16.63) • 1 ♂; same collecting locality as holotype; 7 Jan. 2020; MNCN 50542 • ♂; same collecting locality as holotype; Dec. 2020; ZMB 90453 • 1 ♂; Benguela Prov., between Dombe and Equimina; –13.18333°, 12.99139°; 367 m a.s.l.; 14 Feb. 2020; Pedro Vaz Pinto and Javier Lobón-Rovira; MNCN 50543 • 1 ♀; same collecting details as previous material; ZMB 90452.
ANGOLA • 2 ♂, subadult; same collecting locality as holotype; Dec. 2020; MNCN 50544 and FKH0499 • 1 ♀; same collecting locality as previous; FKH0500.
A medium sized Hemidactylus, with SVL of 43.2 mm (mean) and maximum width of 8.8 mm (Fig.
Holotype of Hemidactylus carivoensis sp. nov. (FKH0033) from Carivo, Benguela Province, Angola. A – Ventral and dorsal view of body. B – Details of head in lateral, dorsal and ventral views (from top to bottom). C – Details of right toes and left fingers (from left to right). Photos by Pedro Vaz Pinto.
Hemidactylus carivoensis sp. nov. can be distinguished from other non-Angolan western and central African congeners based on the same characteristics of H. benguellensis (
Measurements and meristic characters of the holotype are presented in Table S7. Adult female with a snout-vent-length (SVL) of 45.16 mm and a tail length (TL) about the same size than SVL 44.79 mm. Body slender, nape distinct. Head slightly narrower than the body and largely elongated (HW/HL 0.65). Canthus rostralis not prominent. Eye diameter (3.04 mm), with vertical pupil and crenulated margin. Supraciliar scales small and rounded. Ear height (0.83 mm). Ear to eye distance slightly larger than orbit diameter (3.46 mm). Snout rounded and pointed. Frontal scales granular and larger than occipital scales. Occipital scales granular interspersed with large number of smooth and conical tubercle scales from eyes to nape. Rostral wider than deep (2.31 vs. 0.93 mm, respectively). Rostral semi-divided posterodorsally, in contact with 1st supralabial, nostril, two postnasals and one internasal scales. Eleven supralabials and 9 infralabials. First supralabial in contact with the nostril. Nostril circular rounded by rostral, supranasal and two postnasals. Postnasals larger than supranasal. One or two rows of scales between supralabials and the orbit. Mental large, triangular and rounded posteriorly, with two large rectangular postmental scales in broad contact posteriorly to the mental. 4 post-postmental scales, composed by post-postmental slightly smaller than postmental scales in contact with postmentals and 1st and 2nd infralabials, and 2 post-postmental half size than lateral post-postmental in contact with postmental scales. Gular scales slightly smaller than ventral scales and granular. Between the gular scales and infralabials a row of enlarged scales is present, decreasing in size until the 5th infralabial where they become the same size as the gular scales.
Body relatively robust and slightly elongated (TRL/SVL 0.39). Ventral scales widely larger than dorsal scales, with 36 scales across the belly. The dorsal pholidosis present heterogenous conical, granular scales interspersed by 17 strongly keeled dorsal tubercle rows of at midbody. Dorsal tubercle rows are separated by 3 granular scales. Tubercle scales reach the posterior part of the eye region where tubercle scales lose the keeling progressively. Tail with four strongly keeled dorsal tubercles rows dorsally and subcaudal scales small, about one fourth of the tail width, interspersed by 22 horizontal whorls of keeled scales. Precloacal scales enlarged and one well-developed postcloacal spur on each side.
Fore- and hindlimbs relatively short, stout; forearm short (FL/SVL 0.16); tibia short (CL/SVL 0.18). Short digits and clawed. All digits of manus and pes indistinctly webbed. Scansors beneath each toe composed by 1st and two terminal scansor undivided. 4th toes with 3 undivided terminal scansors. Scansors beneath each finger equally divided, with the exception of 1st and last terminal scansors undivided. Number of scansors: 6-6-7-7-7 (right manus), 7-8-9-10-7 (right pes). Relative length of digits: V < IV=III > II > I (right manus); V < IV < III > II > I (right pes).
Variation in scalation and body measurements of the paratypes of H. carivoensis sp. nov. are reported in Table S7. All the material analyzed is in agreement entirely with the holotype.
In life (specimen MNCN 50543; Fig.
The species epithet “carivoensis” refers to the Farm Carivo, an old estate situated along the banks of the mid-lower Coporolo River on the coastal plain of Benguela Province, and where most of the type series was collected. The species proved to be common in the area, and by recognizing the farm, we also acknowledge the ongoing support from the owners to researchers, similar to the Chapmans nearly a century ago.
The full distribution range of the species remains unknown, even though so far it has only been confirmed to occur across the coastal plain of western Benguela Province. Due to the variable morphology of the taxon known as H. benguellensis and which formerly included material now assigned to H. cinganji sp. nov., it is possible that some historical material was wrongly identified and should instead belong to this newly described species. Spiny savannas are well distributed in western Angola, suggesting that the new species might be common across a wider range than what is currently known, but available data is still poor. However, due to limited material confirmed to belong to this species, we can’t calculate the EOO and we regard the conservation status of this species as Data Deficient. Therefore, it is important for future studies to establish the real distribution of H. benguellensis, H. cinganji sp. nov. and H. carivoensis sp. nov. to better determine the conservation status of the species.
Hemidactylus carivoensis sp. nov. represents an arboreal species occurring on coastal savanna habitats dominated by small acacia (Senegalia spp.) trees and bushes, and often with abundant accumulation of dead wood. Their preferred habitat is well contained within the Semi-arid Savannas. The species was found during night surveys and in sympatry with Afrogecko ansorgii, albeit in different niches. While individuals of A. ansorgii were found foraging in small twigs and branches at medium height of bushes (
The phylogenetic analysis revealed that Hemidactylus faustus sp. nov. clusters within a large clade, which includes the H. nzingae-group, H. bayonii-group, H. benguellensis-group, and H. pfindaensis, although its phylogenetic position is not well-stablished (Fig.
ANGOLA • 1 ♀; Malanje Prov., Pungo Andongo; -9.67333°, 15.59222°; 1217 m a.s.l.; 11 Jul. 2019; Pedro Vaz Pinto and Javier Lobón-Rovira; good condition with partially regenerated tail; FKH0281.
ANGOLA • 1 ♂; same collecting details as holotype; MNCN50534 • 2 ♀; same collecting details as holotype; MNCN50535 and ZMB 90447 • 1 ♀; same collecting locality as holotype; 11 Aug. 2018; Beatriz Vaz Pinto; FKH0023.
ANGOLA • 1 ♀; same locality as type material; 11 Aug. 2018; Pedro and Afonso Vaz Pinto; ZMB 90446 • 1 ♂, juv.; same collecting details as previous material; ZMB 90445 • ♀; same locality as type material; 15 Oct. 2020; Pedro Vaz Pinto; MNCN 50536.
A robust medium sized Hemidactylus, with SVL of 39.4 mm (mean) and maximum width of 7.4 mm (Fig.
Holotype of Hemidactylus faustus sp. nov. (FKH0281) from Pungo Andongo, Malanje Province, Angola. A – Ventral and dorsal view of body. B – Details of head in lateral, dorsal and ventral views (from top to bottom). C – Details of left toes and right fingers (from left to right). Photos by Pedro Vaz Pinto.
Head slightly more quadrangular than the other members of the Angolan Hemidactylus (HL/HW ≤1.4 vs. >1.5 Angolan congeners) and regenerated thickened tail found in all specimens collected (n=8), a feature never recorded among Angolan congeners. It can be distinguished from the other non-Angolan western and central Africa congeners based on the same characteristics of the other Angolan species (
Measurements and meristic characters of the holotype are presented in Table S8. Adult female with a snout-vent-length (SVL) of 39.39 mm and regenerated tail length (TL) of 22.84 mm. Robust body, nape slightly distinct. Head slightly wider than the body and shorten (HW/HL 0.67). Canthus rostralis not prominent, but slightly marked. Eye diameter (3.05 mm), with vertical pupil and crenulated margin. Supraciliar scales small and pointed. Ear height (0.98 mm). Ear to eye distance slightly larger than orbit diameter (3.17 mm). Snout rounded. Frontal scales granular and of similar size as occipital scales. Occipital scales granular interspersed with large number of smooth and conical tubercle scales from eyes to nape. Rostral wider than deep (1.66 vs. 0.91 mm, respectively). Rostral semi divided posterodorsally, in contact with 1st supralabial, nostril, two postnasal and one internasal scales. 9 supralabial and 7 infralabials. First supralabial in contact with the nostril. Nostril circular rounded by rostral, supranasal, prenasal and 2 postnasals. Prenasal, postnasal and supranasal same size. One row of scales between supralabials and the orbit. Mental large, triangular, with two larges rectangular postmental scales in short contact posteriorly to the mental. 7 post-postmental scales, composed by 2 post-postmental half size of postmental scales in contact with postmentals and 1st and 2nd infralabials, and 5 small post-postmentals in contact with postmental scales. Gular scales half size than ventral scales and granular. Between the gular scales and infralabials a row of enlarged scales is present, decreasing in size towards the 5th infralabial where they become the same size as the gular scales.
Body robust and slightly short (TRL/SVL 0.41). Ventral scales widely larger than dorsal scales, with 31 scales across the belly. The dorsal pholidosis presents heterogenous conical, granular scales interspersed by 16 conical dorsal tubercle rows at midbody. Dorsal tubercle rows are separated by 3 granular scales. Tubercle scales reach the posterior part of the eye region where they lose the keeling progressively. Tubercle in the base of tail is well developed. Tail with lateral conical tubercle rows. Regenerated tail with regular larger scales (after precloacal) enlarged and 2 well-developed postcloacal spurs on each side.
Fore- and hindlimbs relatively short, stout; forearm medium sized (FL/SVL 0.23); tibia short (CL/SVL 0.18). Digits short and clawed. All digits of manus and pes indistinctly webbed. Scansors beneath toes and fingers are equally divided and composed by 1st scansor undivided and variable number of undivided terminal scansors. Number of scansors: 6-8-7-7-7 (right manus), 7-10-11-10-9 (right pes). Relative length of digits: V < IV < III > II > I (right manus); V < IV < III > II > I (right pes).
Variation in scalation and body measurements of the paratypes and additional material of H. faustus sp. nov. are reported in Table S8. All the material examined is in concordance with the description of the holotype.
In life (specimen MNCN 50534; Fig.
The name “faustus” applies to a Latin word that designate ‘good luck’, evoking the serendipitous discovery of this species. The species epithet is used as a masculine adjective singular. The first specimen was found by Beatriz Vaz Pinto, daughter of PVP, under a small stone which was removed while preparing a campsite. This unexpected find led to further collecting of this new and previously unrecorded form, albeit from a locality that had been regularly surveyed since the mid-19th century.
This species is likely a micro-endemic form, strictly associated with the conglomerate inselbergs of Pungo Andongo also known as Pedras Negras (Black Rocks), just north of the mid-Cuanza River in western Malanje Province, Angola (Fig.
Hemidactylus faustus sp. nov. represents a ground-dwelling rupicolous species apparently associated with the unique geological formation of conglomerate massifs in northern Angola. It was found sheltering under small rocks or between the cavities created by plant roots growing on the flattened top of massive inselbergs, at around 1250 m a.s.l. Most specimens were collected at night foraging on the ground or at times climbing the sparse and stunted vegetation present, possibly hunting small spiders and other invertebrates. The specimens displayed an elusive behavior, jumping and disappearing quickly between the cavities and among vegetation roots when disturbed. The species occurs in sympatry with H. paivae (see Table S2 for H. paivae recorded localities), which occupies a different ecological niche, the latter living on the vertical and inaccessible walls of the conglomerate boulders. Both species could also be found in the rocky conglomerate base that makes the transition between various inselbergs. The site where the species was discovered lies within the Angolan Miombo Woodlands, even though the local ecological conditions can be considered atypical.
Hemidactylus mabouia is the most genetically distant species from all the Angolan congeners (minimum ND2 uncorrected p-distance >26%, see Table
Consequently, this work provides 25 new records (Table S2, Fig.
1a) | Median subcaudals broadened transversely (> ½ tail width) | H. mabouia |
1b) | Median subcaudals small, not forming broad transverse plates (< ½ tail width) | 2 |
2a) | Regenerate and original tail widened at the base | H. faustus sp. nov. |
2b) | Regenerate and original tail not widened at the base | 3 |
3a) | Precloacal-femoral pores > 15 | 4 (H. benguellensis -group) |
3b) | Precloacal-femoral pores < 11 | 6 |
4a) | Series of keeled subcaudal scales under the tail whorls and precloacal-femoral pores < 22 | H. carivoensis sp. nov. |
4b) | Lack of keeled subcaudal scales and precloacal-femoral pores > 23 | 5 |
5a) | 9 Supralabials | H. cinganji sp. nov. |
5b) | ≥ 10 Supralabials | H. benguellensis |
6a) | Feebly keeled dorsal and caudal tubercles | 7 |
6b) | Strongly keeled dorsal and caudal tubercles | 10 |
7a) | SVL of adult individuals < 43 mm | 8 (H. bayoni -group) |
7b) | SVL of adult individuals > 44 mm | 9 (H. longicephalus -group) |
8a) | Scales across the belly usually more than 32 | H. vernayi |
8b) | Scales across the belly usually less than 32 | H. bayonii |
9a) | TRL/SVL ratio ≥ 0.44 | H. paivae |
9b) | TRL/SVL ratio < 0.44 | H. longicephalus |
10a) | Scales across the belly < 27 and dorsal tubercle rows more than 15 | H. nzingae |
10b) | Scales across the belly ≥ 28 and dorsal tubercle rows less than 13 | H. pfindaensis sp. nov. |
Knowledge on Angolan herpetofauna has notably increased in recent years, with several new reptile species being described in recent years (
This work provides the first integrative taxonomic assessment for Angolan Hemidactylus, in which large biogeographic, phylogenetic and morphological datasets were analyzed to address variability and cryptic diversification in the genus. The study highlights that integrative taxonomy provides a more robust tool to resolve traditional taxonomical hypotheses thereby avoiding misidentifications (
Time-tree analysis shows that most Angolan Hemidactylus lineages have diversified during the Miocene, coinciding with a progressively cooling climate and increased climatic seasonality in southern Africa, leading to the expansion of moist savannas and increased ecological heterogeneity (
A fourth lineage of uncertain phylogenetic relationships is represented by the highly specialized and micro-endemic form H. faustus sp. nov., whose ancestors may have persisted in the inselberg regions of Pungo Andongo as climatic instability could have increased selection pressure over Hemidactylus populations, possibly leading to local extinctions and higher specialization. Two other closely related Miocene lineages may have primarily evolved in the highly heterogeneous and mountainous regions of southern central Angola, possibly splitting into a coastal form represented today by H. carivoensis sp. nov., and a highland lineage that includes the cluster H. benguellensis-cinganji. The seventh and most divergent of all Angolan Hemidactylus lineages includes the H. longicephalus-group, which may have evolved in moister habitats along the Angolan escarpment forests. Our findings suggest that three of these seven lineages may have split further in response to habitat shifts resulting in niche specialization, likely during the Pliocene. We now recognize several of these younger lineages as species. The coastal lineage may have split into an arid-adapted arboreal form, represented by H. vernayi, and a more woodland/thickets ground-dwelling form, represented by H. bayonii. The highland lineage is represented by one form H. cinganji sp. nov., which to date has only been found in Benguela’s escarpment and its lower highlands where it may have evolved, and a second, highly variable taxon in southern Angola, now recognized as H. benguellensis. The latter species is atypical among Angolan Hemidactylus, because of its morphological variability and adaptability to different niches and ecological conditions. Furthermore, it is present across different biomes and a high range of altitudes, from montane environments to the Namib Desert. Interestingly, a similar speciation pattern was found in another Angolan gekkonid of the genus Afroedura, in which the species present in the southern highlands is also widespread across the coastal plain while showing a much deeper divergence with remaining highland species (
Finally, the more divergent H. longicephalus-complex, may also have diversified during the Pliocene, forming three clades, two within H. longicephalus, and the other represented by H. paivae. The two H. longicephalus clades showed only moderate genetic differentiation and could not be separated morphologically or ecologically. Therefore, we speculate that both arboreal forms are likely going through an incipient process of speciation, with two lineages that may have evolved segregated by the Cuanza River. Angolan Scarp forests are known to promote speciation, which has been well documented in the case of birds, for which there are endemic representatives on the scarp forest blocks north and south of the Cuanza River (
Nevertheless, the relatively poor molecular support, absence of clear morphological differentiation and possible distributional and molecular overlap with sister-clades, suggests that the validity of H. paivae and H. gramineus (from the Congo basin) may be questionable and should be reassessed in the future appending availability of larger series with better geographical coverage and additional molecular data.
We applied a preliminary biogeographic overview framework extracted from a rendition of Angola’s Main Biogeographic Units (AMBU), which is currently being elaborated (Veríssimo et al. in prep.). This categorization is used to tentatively provide interpretations of scenarios for the distributions and ecological requirements of regional populations of Hemidactylus. Notably all strictly Angolan taxa, with the exception of the highly adaptable H. benguellensis, which has been confirmed to be present in at least seven different AMBU’s, are associated with a single AMBU, or in some cases are only marginally represent in transition zones between two AMBUs. Nevertheless, some Hemidactylus species are known to exhibit remarkable adaptability, being successful colonizers, such as H. mabouia (
The phylogenetic hypothesis provided in this work highlights Angola as an important source of diversification within Hemidactylus in west-central Africa. The discovery of several micro-endemic species of Hemidactylus (H. faustus sp. nov. and H. carivoensis sp. nov.) as well as of other reptiles (
Special thanks to the late William R. Branch, to whom we dedicate this work. He was part of this project since the very beginning and his collection, knowledge and contributions were highly needed to achieve this work. We thank Beatriz Vaz Pinto, who found the first specimen ever of the newly described species, H. faustus sp. nov., and Afonso Vaz Pinto for his enthusiastic and incredible support on the field, collecting and processing crucial material for this work. We thank to Raquel Godinho for her help in the molecular analysis. We thank to CTM-CIBIO workers for their support on genetic and lab efforts, specially to Susana and Rocio. We thank the Angolan Ministry of Environment Institute of Biodiversity (MINAMB) issuing export permits (31/GGPCC/2016) for biodiversity surveys that resulted in the discovery of the new species, and in particular the Director of Instituto Nacional da Biodiversidade e Áreas da Conservação (INBAC), Dr. Albertina Nzuzi. RE’s fieldwork was made possible through the help of the University of Kimpa Vita in Uíge and partially funded through a travel grant from the German Academic Exchange Service (DAAD) and the “strategic partnership” program of the TU Dresden (C. Neinhuis and T. Lautenschläger). Additional surveys were supported by the Ministério do Ambiente - Instituto Nacional da Biodiversidade e Áreas de Conservação (INBAC) within the project agenda “Expansão e Fortalecimento do Sistema de Áreas Protegidas em Angola” through a grant provided by GEF under the auspices of UNEP. RE thanks M. F. Branquima, J. Lau and M. Hölting for support in the field. Permission to conduct biodiversity research in Angola and to export specimens was granted by the Instituto Nacional da Biodiversidade e Áreas de Conservação (INBAC), Ministério do Ambiente, República de Angola and the Gabinete Provincial da Agricultura, Pecuária e Pescas do Uíge under permission numbers 122/INBAC.MINAMB/2013, no. 17/014, no. 02/018; no. 05/2019. The lab work was supported by a grant from the Paul-Ungerer-Stiftung. We also recognize the unconditional, and crucial support and advice received by Vladimir Russo, and the kind hospitality of Álvaro Eugénio hosting the team at Fazenda Carivo. We thank Luke Verburgt and Rogério Ferreira for providing some photographs used in this study. Funding for fieldwork was provided by the National Research Foundation of South Africa (to William R. Branch), the South African National Biodiversity Institute (2009 expedition), and the National Geographic Okavango Wilderness Project (2016 to 2019 expeditions). NLB and JLR are currently supported by Fundação para a Ciência e Tecnologia (FCT) contract SFRH/PD/BD/140810/2018 and PD/BD/140808/2018, respectively.
File 1
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Explanation note: Table S1. Different Angolan Main Biogeographic Units (AMBUs) defined on this work with ID Codes, names and descriptions.
File 2
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Explanation note: Table S2. List of material used for the genetic and morphological analyses with information on coordinates, localities, source, type of record (G – genetics; V – voucher; L – Lost Material), Catalog numbers, Field numbers and GenBank accession numbers. Asterisks (*) denoted historical Hemidactylus material which species ID requires reevaluation based on new species description.
File 3
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Explanation note: Table S3. Measurements (in mm) and scale counts for newly collected material of Hemidactylus bayonii. For abbreviations see Material and Methods section.
File 4
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Explanation note: Table S4. Measurements (in mm) and scale counts for newly collected material of Hemidactylus vernayi. For abbreviations see Material and Methods section.
File 5
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Explanation note: Table S5. Measurements (in mm) and scale counts of the holotype and paratypes of Hemidactylus pfindaensis sp. nov. For abbreviations see Material and Methods section.
File 6
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Explanation note: Table S6. Measurements (in mm) and scale counts of the holotype and paratypes of Hemidactylus cinganji sp. nov. For abbreviations see Material and Methods section.
File 7
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Explanation note: Table S7. Measurements (in mm) and scale counts of the holotype and paratypes of Hemidactylus carivoensis sp. nov. For abbreviations see Material and Methods section.
File 8
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Explanation note: Table S8. Measurements (in mm) and scale counts of the holotype and paratypes of Hemidactylus faustus sp. nov. For abbreviations see Material and Methods section.