DOI: 10.3897/vz.76.e167783

Authors: Eduardo A. Aguilar-Herrera, Salomón Sanabria-Urbán, Dulce L. Flores-Martínez, José David Gómez-Tapia, Misael Seba-Chacha, Leopoldo D. Vázquez-Reyes, Francisco A. Rivera-Ortíz, Patricia Ramírez-Bastida, Bruno Cortés-Ortiz, R. Alejandro Calzada-Arciniega, Etienne U. Avila-Ortega, Dónovan I. Víquez-Vega, Omar Hernández-Ordoñez, Christopher Blair, Víctor H. Jiménez-Arcos

Abstract: Abstract We describe three new species of lungless salamanders (Plethodontidae) in the genus Pseudoeurycea from Cerro Rabon, located on the eastern slopes of the Sierra Mazateca, Oaxaca, Mexico. This mid-elevation mountain, largely surrounded by warmer lowlands, remains relatively understudied. We present molecular and morphological evidence distinguishing the three new species from their congeners. According to our phylogenetic analysis, one of the new species belongs to the P. leprosa group, while the other two are members of the P. juarezi group. Notably, one of the new species represents the fourth worm salamander known from west of the Isthmus of Tehuantepec, and another exhibits morphological features resembling those of cave- or saxicolous salamanders. In addition, we obtain genetic information from Pseudoeurycea werleri and find high divergence between populations of Los Tuxtlas region, Veracruz and Sierra Mazateca, Oaxaca. With the species described herein, the number of recognized species in the genus Pseudoeurycea rises to 44, of which 43 are distributed in Mexico. Due to their occurrence at high elevations and in rainforest (low elevation) on Cerro Rabon, the new species are likely at risk of extinction. However, the protection of communal lands by Mazatec communities could support the conservation of these species and the rest of the biodiversity on a regional scale.

HTML

XML

PDF

DOI: 10.3897/vz.76.e180973

Authors: Oleg V. Brandler, Andrey R. Tukhbatullin, Svetlana Y. Kapustina, Sergey N. Matveevsky, Fatimat A. Tembotova, Andrey Y. Puzachenko

Abstract: Abstract The systematics of blind mole rats (Spalacinae), a group of highly specialized subterranean rodents, remain a subject of debate. Within the genus Spalax, the greater blind mole rat (Spalax microphthalmus) is distinguished by its unique diploid chromosome number (2n = 60 versus 2n = 62 in others) and the most extensive geographic range. However, its intraspecific variation has been insufficiently studied. Previous finding of specimens with 2n = 62 in the North Caucasus were attributed to chromosomal polymorphism within S. microphthalmus. In this study, we conducted a comprehensive analysis of morphometric, morphological, molecular, and chromosomal variation across the entire range of S. microphthalmus, integrated with a comparative analysis of the genus Spalax. Our results demonstrate that the North Caucasian populations (2n = 62) exhibit consistent species-level differences in molecular genetics (from 8% to 12% divergence in cyt b), karyotype, and cranial morphology, distinguishing them from S. microphthalmus and all other congeners. This lineage also possesses a unique combination of morphological traits, including features that bring it closer to the hypothetical common ancestor of all modern Spalax species. Based on this integrative evidence, we describe this lineage as a new species: Spalax lyapunovae sp. nov., increasing the number of extant Spalax species to nine. This newly recognized species, endemic to the central North Caucasus, requires further ecological and distributional studies. Given its presumably limited range, an urgent assessment of its conservation status is warranted.

HTML

XML

PDF

DOI: 10.3897/vz.76.e178403

Authors: Krystal Tolley, Werner Conradie

Abstract: Abstract Several populations of forest-living chameleons in the genus Nadzikambia have been recorded from the montane sky island forests in northern Mozambique. These populations have not been evaluated for their species status, despite the potential for these allopatric populations having diverged at the species level due to vicariance of forest since the mid-Miocene. With only two described species of Nadzikambia, we hypothesised that candidate (new) species occur on each of four additional montane sky islands surveyed. We applied an integrative taxonomic approach to evaluate this, using morphological and genetic data collected from each population. Their distributions were mapped, the morphological dataset was quantitatively analysed using a multivariate analysis, and one nuclear and three mitochondrial genes were sequenced to generate a phylogeny and allele networks. Independent species delimitation analyses were applied to the genetic dataset (mPTP, SpeciesIdentifier, p distances) as supporting evidence for candidate species. By applying integrative taxonomy under the General Lineage Species Concept, we find support for four new species of Nadzikambia. The montane forests where they occur have declined in extent due to slash and burn agriculture and these forest endemics are presumed to be in a proportional decline as their habitat contracts. By examining historical and present-day satellite imagery, we show that all Nadzikambia species have lost significant proportions of their range. Given they do not occur outside these forests, these species are in imminent danger of extinction.

HTML

XML

PDF

DOI: 10.3897/vz.76.e176241

Authors: Aurélien Miralles, Mark D. Scherz, Sam Hyde Roberts, Andolalao Rakotoarison, Frank Glaw, Miguel Vences

Abstract: Abstract Madascincus is a genus of quadrupedal skinks endemic to Madagascar, with 12 recognized species described between the 19th and 21st centuries, occupying diverse habitats from humid forests to arid southern regions and even high-altitude areas. Recent field expeditions uncovered two morphologically distinct forms that did not match any known species, prompting integrative taxonomic analyses that combine multilocus phylogenetics and morphology. Results revealed that each of these forms represents a highly divergent and likely ancient lineage, as evidenced by the substantial branch lengths in both mitochondrial and nuclear phylogenetic trees. These investigations led to the formal description of two new species with restricted distribution ranges: Madascincus irery sp. nov., likely endemic to the island of Nosy Be, and Madascincus minotaurus sp. nov., apparently restricted to the Tsingy de Namoroka karst system.

HTML

XML

PDF

DOI: 10.3897/vz.76.e169219

Authors: Diego Omar Di Pietro, Julieta Sánchez, Sebastián Poljak, Leandro Alcalde

Abstract: We analysed the genetic and morphological variation in Philodryas patagoniensis, a widely distributed South American racer snake. Two well-differentiated haplogroups were identified using mitochondrial gene sequences (12S and 16S) and the nuclear gene c-mos. Genetic divergence between these haplogroups correlates strongly with morphological differences, allowing the recognition of two morphotypes within P. patagoniensis. We integrated genetic and morphological data into a total evidence analysis using parsimony. Our results support the distinction between the two haplogroups/morphotypes, consistent with recognising two species within P. patagoniensis. Accordingly, we re-describe P. patagoniensis, refining its morphological variation and geographical distribution to reflect the observed genetic differentiation, and describe a new species. Morphological characteristics can distinguish the two species, including body measurements, scale patterns, and cranial osteology. The new species differs from P. patagoniensis sensu stricto in traits associated with arboreal habits, which are strongly correlated with the distribution of the two taxa across forested and open habitats in South America. Furthermore, P. patagoniensis sensu stricto has a significant Lycosa spider component in its diet, which is absent in the newly described species.

HTML

XML

PDF

DOI: 10.3897/vz.76.e166419

Authors: N. Joris Fleck, Alice Petzold, Andolalao Rakotoarison, Miguel Vences, Mark D. Scherz

Abstract: The role of regional diversification versus the effect of migration in generating local species assemblages remains poorly known. Here, we contribute to the understanding of the role of colonisation and in situ diversification by studying an assemblage of miniaturised microhylid frogs of the genus Stumpffia Boettger, 1881, of which six species have been known to occur on Montagne d’Ambre, a volcanic mountain in the north of Madagascar. These six species are distributed over different, partly overlapping elevational levels. We examined this assemblage based on molecular data (16S mtDNA and Rag1 nDNA), new data on the elevational distribution among local Stumpffia species, and differences in advertisement calls. Our results revealed several genetic lineages constituting distinct species, including another species record for the mountain, S. mamitika Rakotoarison et al., 2017, as well as the new candidate species Stumpffia sp. aff. angeluci. This brings the total number of described species known to occur on the mountain to seven, four of which are micro-endemic. Our data indicate that one clade, consisting of four species, has arisen in situ as a microendemic radiation. We discuss alternative evolutionary scenarios for the biogeographic origin of the observed Stumpffia species.

HTML

XML

PDF

DOI: 10.3897/vz.75.e156077

Authors: Amanda K. Pinion, Daemin Kim, Elizabeth P. Dolan, David S. Portnoy, Gary Voelker, Kevin W. Conway

Abstract: Combined analyses of molecular and morphological data support a revised classification of Notropis stramineus comprising five distinct evolutionary lineages, two for which names are available, Notropis stramineus (Cope, 1865) and N. missuriensis (Cope, 1871), herein redescribed, and three for which no names are available, here formally described as new species. Four of these clades comprise a species complex, here termed the N. stramineus species complex, while these four clades, in addition to N. procne, N. topeka, N. chihuahua and the fifth clade form a monophyletic group here termed the N. stramineus species group. Notropis lucifer sp. nov., sister taxon of N. chihuahua, is distributed in the Colorado River and Rio Grande basins of Texas (USA), where it is distributed in the Devils River, and presumably also in Pinto Creek; based on distribution, populations in tributaries of the Rio Grande in Mexico are tentatively also assigned to this species. Notropis lucifer sp. nov. can be distinguished from other members of the N. stramineus species group primarily by coloration in life and pigmentation patterns which are still visible after preservation. Notropis oblitus sp. nov. is found in several Gulf Slope streams in Texas, including the upper reaches of Nueces, San Antonio, and Guadalupe River basins, though likely absent from the Colorado River basin. This species can be distinguished from other members by head shape, eye size and pigmentation patterns. Notropis multicorniculatus sp. nov. is found in the western portions of the Arkansas, Canadian and Red River basins in parts of Texas, Oklahoma, and Kansas, and likely also Arkansas and Colorado, as well as the Pecos River (New Mexico), where it is likely non-native. This species can be distinguished from other members of the species complex by comparatively larger and more abundant tubercles in males and differences in body shape. Comments are provided regarding the genus Miniellus, which has been recently suggested to comprise 21 species, including N. stramineus.

HTML

XML

PDF

DOI: 10.3897/vz.75.e167366

Authors: Werner Conradie, Chad Keates, Eli Greenbaum, Javier Lobón-Rovira, Krystal A. Tolley, Max Benito, Pedro Vaz Pinto, Reuben V. van Breda, Luke Verburgt

Abstract: Abstract Ichnotropis is a genus of medium-sized lacertids endemic to sub-Saharan Africa, characterised by rough head shields. The genus currently comprises six nominal species distributed across much of southern, central, and eastern Africa. Some species are apparently active at only certain times of the year, resulting in limited specimen collections and severely hampering research. This scarcity of material has historically made comprehensive systematic reviews of the genus difficult and has led to the description of numerous regional morphological variants as distinct species or subspecies. Material collected in recent years has enabled us to provide a new phylogenetic hypothesis of Ichnotropis using two mitochondrial genes (16S and ND4) and two nuclear genes (c-mos and RAG-1). Our phylogenetic dataset includes 56 individuals representing five of the six currently recognised species (excluding I. chapini). Additionally, the broad geographical sampling of the widespread I. capensis group has allowed us to explore the taxonomic status of several species and subspecies within the group. As a result, we demonstrate the monophyly of Ichnotropis in relation to other African lacertids and present the most comprehensive phylogeny of the genus to date. We also provide the first phylogenetic placements for I. tanganicana and I. grandiceps, which allows us to validate their taxonomic statuses. Furthermore, we recovered a new cryptic species closely related to I. grandiceps, and identified several well-supported clades within the I. capensis group, all corroborated by multi-locus species delimitation analyses. One of these clades is described herein as a new species, while the remaining taxa of interest are discussed and highlighted for future investigation. Based on our findings, we recommend the following taxonomic revisions: Ichnotropis longipes and I. macrolepidota should remain synonyms of I. capensis; I. bivittata pallida and I. capensis nigrescens are treated as a junior synonyms of I. bivittata; and I. overlaeti is considered a junior synonym of I. tanganicana. Although we could not determine the phylogenetic placement of I. chapini due to the lack of genetic material, its head morphology and scalation support its reassignment to the I. bivittata group. Thus, it is retained as a valid species pending the availability of new material for further taxonomic actions. In conclusion, this study resolves several long-standing taxonomic issues within one of Africa’s most understudied lacertid genera and lays a solid foundation for future research on the genus Ichnotropis.

HTML

XML

PDF

DOI: 10.3897/vz.75.e162650

Authors: Amirtha Balan, Abhijit Das, Bitupan Boruah, Frank Tillack, Samuel Lalronunga, Veerappan Deepak

Abstract: Abstract The genus Ptyctolaemus Peters, 1864 is currently represented by three species; P. gularis, P. collicristatus and P. chindwinensis. Previous molecular phylogenetic studies have highlighted additional lineages within P. gularis. Phylogenetic analysis using the ND2 mitochondrial gene recovered three distinct lineages in India. Multivariate analyses using morphological data placed the type specimen of P. gularis (ZMB 5004) with the samples collected from Meghalaya. We assign this lineage as P. gularis and describe the other two lineages as new species. Ptyctolaemus siangensis sp. nov. found west of Siang River in Arunachal Pradesh and Ptyctolaemus namdaphaensis sp. nov. found in Namdapha, Changlang district of Arunachal Pradesh. Although phenotypically similar the two new species differ from its congeners in gular colouration and subtle morphological differences.

HTML

XML

PDF

DOI: 10.3897/vz.75.e149399

Authors: Nikolay A. Poyarkov, Dana D. Skorinova, Andrey M. Bragin, Veniamin V. Kolchanov, Vladislav A. Gorin, Alexey V. Trofimets, Alexander P. Yuzefovich, Dac Xuan Le, Tan Van Nguyen, Pavel P. Skutschas

Abstract: Abstract Herein we examined the cranial osteology of 15 species of Ichthyophis (I. asplenius, I. beddomei, I. glutinosus, I. kohtaoensis, I. larutensis, I. mindanaoensis, I. multicolor, I. nguyenorum, I. nigroflavus, I. sikkimensis, I. singaporensis, I. supachaii, I. tricolor, I. weberi, and Ichthyophis sp. from northern Vietnam) with a special emphasis on the temporal region. We presented the first detailed description of the cranium and the atlas of an Ichthyophis species based on micro-CT scanning data. We discuss the implications of temporal region composition for the systematics of this group and the evolution of the cranium in Gymnophiona as a whole. We further provided comments on a jaw-closing mechanism and reported on the presence of phylogenetically basal cranial features in ichthyophiids that are also found in stem caecilians. Our detailed morphological description was based on a specimen from a previously unknown population of unstriped Ichthyophis from northern Vietnam. We consequently described this population as a new species based on morphological and molecular (3967 bp from cyt b, 12S rRNA, and 16S rRNA mitochondrial DNA genes) lines of evidence. We provide comparisons of external morphological traits of the new species with its congeners and further compare its cranial osteological features with other Ichthyophis for which skull descriptions exist. The new species differs from the morphologically similar species I. yangi and I. chaloensis by a significant divergence in cyt b and 16S rRNA mitochondrial DNA gene sequences (p = 6.5%–6.9% and p = 4.5%, respectively). The new species is currently known only from evergreen forests of Xuan Lien National Park (Thanh Hoa Province) and Pu Hoat (Nghe An Province) Nature Reserve, northern Vietnam, and was recorded at elevations of 700–800 m asl. We suggest the new species be considered Data Deficient (DD), following the IUCN’s Red List categories.

HTML

XML

PDF

DOI: 10.3897/vz.75.e159878

Authors: Francisco Brusquetti, Diego Bueno-Villafañe, Andrea Caballero-Gini, Paulo D. P. Pinheiro, Flavia Netto, Freddy Burgos-Gallardo, Danilo Fernández Ríos, Edgar Bernabé Cardozo, Diego Baldo

Abstract: Abstract The widely distributed Neotropical frog Leptodactylus fuscus has long been suspected to represent a species complex. Among its numerous synonyms is Leptodactylus gualambensis Gallardo, 1964, described based on specimens from the western South American Gran Chaco and regarded as a typical Chacoan species. This species was synonymized 40 years ago and has not been reassessed since. In this study, we evaluate the taxonomic validity of the Chacoan populations of L. fuscus potentially assignable to L. gualambensis, based on molecular phylogenetic analyses, lineage delimitation, bioacoustics, and morphology using extensive sampling from the South American Gran Chaco and adjacent regions. Our phylogenetic analyses revealed three clades: One distributed across northern South America and Central America, including topotypes of L. fuscus; a second primarily occurring in the South American Gran Chaco, including topotypes of L. gualambensis; and a third found in parts of Paraguay, Argentina, and Brazil. This structure is corroborated by lineage delimitation analysis, genetic differentiation, gene flow estimations, and by differences in advertisement call duration and frequency, as well as head and limb proportions. Based on these results, we support the revalidation of L. gualambensis, redefine the geographic distribution of L. fuscus sensu stricto, and discuss the status of other available synonyms. In addition, we discuss variation in certain morphological traits of L. gualambensis that may be associated with its broad geographic distribution, which encompasses both dry, highly seasonal environments and humid, relatively homogeneous habitats.

HTML

XML

PDF

DOI: 10.3897/vz.75.e161536

Authors: Wolfgang Wüster

Abstract: The advent of molecular methods has revolutionised the field of species delimitation and description, one of the key tasks of systematic biology. In animal taxonomy, one marker, the mitochondrial DNA (mtDNA) molecule, has acquired and retained disproportionate influence. This is despite its uniparental, clonal mode of inheritance, as a result of which the entire molecule acts as a single locus, and that precludes its use as a test for admixture between putative lineages, a key consideration in species delimitation. To establish the extent to which the limitations of mtDNA affect present-day taxonomy in non-avian reptiles, I surveyed species descriptions and delimitations published during the years 2023–2024, determined the markers used, and whether analyses of different markers were set up to critically test or just to confirm mtDNA-inspired candidate species. Mitochondrial DNA remains the dominant molecular marker in reptile taxonomy, being used in 84% of species descriptions and delimitations, and as the sole molecular marker in 44%. Despite the immense progress in next generation sequencing (NGS) technologies and their increasing affordability, only 3.4% of descriptions used NGS approaches. In 61% of descriptions, taxa were identified primarily through mtDNA divergence, and additional data (morphology, single-copy nuclear gene sequences) were used as confirmatory evidence rather than as rigorous tests of mitochondrially inferred species limits. I reiterate the importance of truly integrative species delimitation that critically tests species limits first hypothesised from mtDNA, and suggest ways of improving the robustness of species delimitations by optimising the allocation of resources to more appropriate markers and through analytical approaches that critically test the evolutionary independence of putative species.

HTML

XML

PDF

DOI: 10.3897/vz.75.e150370

Authors: Christian Kehlmaier, Uwe Fritz, Gerald Kuchling

Abstract: Abstract Using mitochondrial genomes and nine nuclear loci, we examined genetic variation in snake-necked turtles (Chelodina sensu lato), with a focus on northern Australian taxa. The mitochondrial phylogeny of the genus is confounded by multiple introgression events, rendering the subgenera Chelodina sensu stricto and Chelydera non-monophyletic. However, in the analyses of our nuclear dataset (6071 bp), the recognition of the subgenera is supported. The morphologically most distinct taxa (Chelodina expansa, C. longicollis, C. oblonga, C. parkeri, C. steindachneri) are well differentiated genetically. However, many other species are not or only weakly distinct, calling their validity into question. Our dataset includes sequences from historical museum material and the holotype of C. kuchlingi, a species currently listed as Critically Endangered by the Biodiversity Conservation Act of Western Australia. Resequencing its mitogenome using protocols optimized for formalin-preserved specimens provides evidence that the formerly reported mitochondrial distinction of C. kuchlingi was based on a sequencing artifact. Two historical specimens of C. kuchlingi are genetically indistinguishable from snake-necked turtles living today on the Ord River floodplain. In addition, C. walloyarrina, a geographically close taxon with introgressed mitochondria from another species, is not differentiated on the nuclear genomic level. We conclude that Chelodina walloyarrina (McCord & Joseph-Ouni, 2007) is a junior synonym of Chelodina kuchlingi Cann, 1997 and that the extant snake-necked turtles from the Ord River floodplain are conspecific. This implies that morphological traits used in the past to diagnose the involved taxa are less important than previously thought. The redefined species C. kuchlingi is distributed on the sandstone plateau and associated escarpments as well as on the lowland coastal plains of the Kimberley region of tropical northern Australia. It no longer qualifies as Critically Endangered and has to be downlisted, pending a new status evaluation. Our results underline the importance of a robust taxonomy for conservation decisions. Further research is warranted to examine the validity of the remaining weakly differentiated Chelodina taxa, which could not be resolved in our analyses.

HTML

XML

PDF

DOI: 10.3897/vz.75.e134683

Authors: Uliana V. Gorobeyko, Denis V. Kazakov, Anastasia A. Kadetova, Irina N. Sheremetyeva, Valentin Yu. Guskov, Irina V. Kartavtseva, Nikolai E. Dokuchaev, Evgeniy S. Zakharov, Sergei V. Kruskop

Abstract: Abstract Myotis petax is a common and widespread Asian bat species, whose intraspecific sequence variability remains poorly understood. In this work we analyzed the variability of the mitochondrial control region and craniometric measurements for an extensive sample set originating from the entire species range. This made it possible to identify the main genetic lineages and to compare their distribution with the morphological groups. From our investigations, we found that the prevalent genetic lineages, namely, “Siberia,” “Amur,” and “Okhotsk,” appear to be connected to large river systems. The cohabitation of various genetic lineages occurs only in territories where different river basins are connected, such as the Primorsky Territory, Khabarovsk Territory, Transbaikalia Territory, and Mongolia. Moreover, we discovered that the five morphological groups (Siberia, Okhotsk, Amur, Kunashir, and Korea) are partially correlated with previously identified genetic lineages and subspecies. However, M. p. petax and M. p. loukashkini were the only two out of the five subspecies that could be well-defined using specific mtDNA sequences and morphological descriptions. Nonetheless, the subspecies M. p. ussuriensis does not have a distinct genetic lineage to allow for their classification. Notably, a specific mix of morphological group and a genetic lineage characterize the “Amurian morphological form,” which may support its validity as a subspecies rank. That notwithstanding, more information is needed to fully unravel the intraspecific structure of M. petax in the southern Far East and potential contact zones of diverse forms.

HTML

XML

PDF

DOI: 10.3897/vz.74.e127269

Authors: Dorottya Győrössy, Vuong Tan Tu, Gábor Csorba, Sanjan Thapa, Péter Estók, Gábor Földvári, Tamás Görföl

Abstract: Abstract In taxonomic works, the weight to be given to morphological, mitochondrial, or nuclear signals, and the assessment of differences as species or subspecies distinctions has also varied considerably over the past decades and is largely a subjective research decision. This apparent example of the “grey zone of taxonomy” underpins the need of critical studies of as many specimens as possible and of using both mitochondrial and nuclear genes in taxonomic-systematic studies, as phylogeny based on uniparentally inherited genes alone may not represent true evolutionary scenarios. Myotis sicarius, a species occurring thorough the Himalayan foothills was found for the first time out of South Asia, in North Vietnam. Analysis of topotypical and Vietnamese specimens revealed high mitochondrial heterogeneity – at the upper limit of the usual threshold of intraspecific difference – but only minute nuclear sequence and negligible morphological differences. Albeit the large geographic distance between the two records might suggest the existence of two putative reproductively isolated taxonomic units, based on the incongruent results we concluded that the split of geographic populations of M. sicarius into different taxa is unsupported. As a morphologically closely resembling species, we also reviewed the taxonomic status of the two morphological forms of M. annectans and synonymizing M. primula with M. annectans was also corroborated by our phylogenetic analyses.

HTML

XML

PDF

DOI: 10.3897/vz.74.e128528

Authors: Jorge Brito, Rubí García, Francisco X. Castellanos, Gabriela Gavilanes, Jenny Curay, Julio C. Carrión-Olmedo, Daniela Reyes-Barriga, Juan M. Guayasamin, Jorge Salazar-Bravo, C. Miguel Pinto

Abstract: Abstract The Andean cloud forests of Ecuador are home to numerous unique mammals. Rodents of the tribe Thomasomyini are particularly abundant in many Andean localities, with Thomasomys – the largest genus in the subfamily Sigmodontinae (51 species) – especially species-rich and diverse. Despite recent advances on the systematics of the genus, where seven species have been described in the last five years, there is tantalizing evidence that its true diversity remains completely understood. Over the course of approximately ten years of fieldwork in Ecuador, a significant number of Thomasomys specimens were collected from various localities in both, the eastern and western Andean ranges. Through an extensive genetic study of these specimens, augmented with what is available in public databases, we argue that there exist at least 20 undescribed species in the genus, with no less that twelve potential new species in Ecuador alone. In this paper, we describe two of these species belonging to the group cinereus, one recently collected and the other previously referred to as Thomasomys sp. 1; further, we present an updated cyt b gene tree of the genus. The gene tree includes at least 56 valid and putative species and supports the monophyly of the genus, while at the same time suggest a paraphyletic “aureus” group. Our findings suggest that the genus likely exhibits additional hidden diversity in significant portions of Colombia, Peru, and Bolivia which calls for the need for a comprehensive reassessment of the entire genus. The recognition of these two new species brings the total number of known Thomasomys to 53 species, 19 of which occur in Ecuador, including 17 that are endemic to this country.

HTML

XML

PDF

DOI: 10.3897/vz.74.e127937

Authors: Alexei V. Trofimets, Christophe Dufresnes, Parinya Pawangkhanant, Andrey M. Bragin, Vladislav A. Gorin, Mahmudul Hasan, Hmar Tlawmte Lalremsanga, Mohd Abdul Muin, Dac Xuan Le, Tan Van Nguyen, Chatmongkon Suwannapoom, Nikolay A. Poyarkov

Abstract: Abstract Berdmore’s narrow-mouthed frog, Microhyla berdmorei (Blyth, 1856), is the largest member of the genus Microhyla and is distributed all over Southeast Asia, from Northeast India and southern China to Sumatra and Borneo in Indonesia. Here we demonstrate that M. berdmorei represents a complex of four species that are morphologically, acoustically, and genetically distinct from each other, and we implement taxonomic revisions. Phylogenetic analyses of three mitochondrial DNA (hereafter mtDNA, including COI, 12S, and 16S rRNA; 3119 bp) and one nuclear (BDNF; 716 bp) gene sequences are corroborated by phylogenomic analyses of 2700 ddRAD-seq loci (387,270 bp). All support that the M. berdmorei complex, which originates from the early Miocene (ca. 19.7 mya), consists of two clades that we date to the late Miocene (ca. 7.5 mya). The first clade, which regroups populations of large-sized individuals, is distributed in Indo-Burma and includes a lineage from Northeast India, Bangladesh, and Myanmar (M. berdmorei sensu stricto) and a lineage from West Malaysia, Thailand, Laos, Cambodia, and Vietnam (for which we propose to resurrect the species M. malcolmi Cochran, 1927). The second clade, which regroups populations of small-sized individuals, occurs in Sundaland and also includes two lineages for which we provide taxonomic descriptions on species rank. The first new species is widely distributed from Peninsular Malaysia to the islands of Borneo and Sumatra (described herein as M. sundaica sp. nov.), while the second one is restricted to the Malay Peninsula and occurs in extreme southern Thailand and adjacent Malaysia (M. peninsularis sp. nov.). We further provide evidence for the synonymy of Callula natatrix Cope, 1867 with M. berdmorei sensu stricto, and M. fowleri Taylor, 1934 with M. malcolmi. Our study illustrates the high diversity of Southeast Asian amphibians, especially in the genus Microhyla, which presently totals 54 species.

HTML

XML

PDF

DOI: 10.3897/vz.74.e128775

Authors: Peter J. McDonald, Aaron L. Fenner, Janne Torkkola, Paul M. Oliver

Abstract: Abstract Stable upland habitats in arid zone biomes are often characterised by locally endemic lineages. Explanations for this pattern include habitat or substrate specialisation (ecological specialisation) or intensifying aridity driving retreat into climatically buffered habitats (climatic refugia). Here we present an analysis of these alternative models using genetic, morphological and climate data for Diplodactylus galeatus, a gecko from central Australia that occurs in a series of isolated populations associated with dissected tablelands and mountain ranges. Analyses of mtDNA and SNP data support four distinct lineages, and dating analyses suggest divergence through the Pliocene. Morphological data show slight differences across lineages. Investigation of climate niche shows that two lineages are restricted to areas more arid than the intervening uninhabited region. These data suggest that specialisation to rocky substrates, potentially with subsequent paleo-erosion of dissected tablelands after a Pliocene wet pulse, was the key driver of divergence in this clade. Based on their deep genetic divergence, and differences in morphology and pattern, we recognise two isolated populations as new species.

HTML

XML

PDF

DOI: 10.3897/vz.74.e130147

Authors: Omar Torres-Carvajal, Camila Sandoval, Diego A. Paucar

Abstract: The taxonomic status of the skinks from Ecuador has never been carefully addressed. In this paper we examine populations of Mabuya lizards across Amazonian Ecuador in an attempt to establish their taxonomic identity and phylogenetic affinities. We confirm the presence of both M. altamazonica and M. nigropunctata and describe a new species from Yasuní National Park, one of the most biodiverse places on Earth. The new species differs from its congeners in lepidosis and color patterns. For the first time, we include samples from Ecuador in a molecular phylogenetic analysis of Mabuya, which confirms the monophyly of the new species and the taxonomic identity of both M. altamazonica and M. nigropunctata from Ecuador. The new species is closely related to M. bistriata. Finally, we present an identification key for species of Ecuadorian Mabuya.

HTML

XML

PDF

DOI: 10.3897/vz.74.e124752

Authors: Bitupan Boruah, Surya Narayanan, Neelavar Ananthram Aravind, Samuel Lalronunga, V. Deepak, Abhijit Das

Abstract: Abstract We describe six new species of Cyrtodactylus from the khasiensis group using morphological characteristics, supported by the molecular analyses based on the mitochondrial ND2 gene. We used four different molecular species delimitation analyses that recovered six distinct undescribed lineages distributed across four states in northeastern India. Our phylogenetic analyses using ML and Bayesian approaches recovered a clade where the recently described C. arunachalensis and C. cayuensis align together with our other samples from Arunachal Pradesh, north of Brahmaputra River. Based on these results and overlapping morphological characteristics we synonymize C. arunachalensis with C. cayuensis. We provide updated comparative morphological characters for species in the khasiensis group and where available these characters are tabulated for males and females separately. Including the six new species the khasiensis group now contains 35 species, of which 26 are endemic to India.

HTML

XML

PDF

DOI: 10.3897/vz.74.e125958

Authors: Uwe Fritz, Hans-Werner Herrmann, Philip C. Rosen, Markus Auer, Mario Vargas-Ramírez, Christian Kehlmaier

Abstract: Abstract Trachemys is a speciose genus of freshwater turtles distributed from the Great Lakes in North America across the southeastern USA, Mexico and Central America to the Rio de la Plata in South America, with up to 13 continental American species and 11 additional subspecies. Another four species with three additional subspecies occur on the West Indies. In the present study, we examine all continental Trachemys taxa except for Trachemys hartwegi using mitochondrial and nuclear DNA sequences (3221 and 3396 bp, respectively) representing four mitochondrial genes and five nuclear loci. We also include representatives of all four West Indian species and discuss our results in the light of putative species-diagnostic traits in coloration and pattern. We provide evidence that one Mexican species, T. nebulosa, has captured a deeply divergent foreign mitochondrial genome that renders the mitochondrial phylogeny of Trachemys paraphyletic. Using nuclear markers, Trachemys including T. nebulosa represents a well-supported monophylum. Besides the mitochondrial lineage of T. nebulosa, there are six additional mitochondrial Trachemys lineages: (1) T. venusta, (2) T. ornata + T. yaquia, (3) T. grayi, (4) T. dorbigni + T. medemi, (5) T. gaigeae + T. scripta, and (6) West Indian Trachemys. These six mitochondrial lineages constitute a well-supported clade. Each mitochondrial Trachemys lineage is corroborated by our nuclear markers. For T. gaigeae another mitochondrial capture event is likely because its mitochondrial genome is sister to T. scripta, although T. gaigeae is deeply divergent in nuclear markers and resembles Mexican, Central and South American Trachemys species in morphology, sexual dimorphism and courtship behavior. The two subspecies of T. nebulosa and many Mexican and Central American subspecies of T. venusta are not clearly distinct in our studied genetic markers. Also, the putatively diagnostic coloration and pattern traits of the T. venusta subspecies are more variable than previously reported, challenging their validity. Our analyses fail to identify T. taylori as a lineage distinct from T. venusta and we propose to assign it as a subspecies to the latter species (Trachemys venusta taylori nov. comb.).

HTML

XML

PDF

DOI: 10.3897/vz.74.e122822

Authors: Micaela A. Chambi Velasquez, Romina Pavé, María A. Argoitia, Pablo Schierloh, María G. Piccirilli, Valeria C. Colombo, Fernando J. Beltrán, Daniel M. Cisterna, Diego A. Caraballo

Abstract: Abstract Understanding species diversity and delineating their boundaries are crucial for effective management and conservation efforts. In the case of bats, species identification holds particular importance from an epidemiological standpoint. The genus Molossus (Chiroptera: Molossidae) encompasses 15 species distributed across the Neotropics, ranging from the southeastern United States to Argentina. This genus exhibits two contrasting patterns of variation: some species are cryptic, while others are morphologically distinct yet genetically similar. This study explores the diversity of Molossus in Argentina through a molecular phylogenetic approach. We analyzed sequences from three molecular markers (cyt b, COI, and FGB) along with morphology data obtained from a sample of 64 individuals. Uni- and multivariate analyses of external and cranial measurements were conducted, alongside comparisons of external and cranial characteristics among species. Based on molecular and morphological differences, we describe a new species within the Molossus genus. This newly discovered species exhibits a broad distribution spanning the Paraná River basin across three distinct ecoregions. It is noteworthy that this species is pseudo-cryptic with respect to similar-sized species such as M. molossus and M. melini. Additionally, it is important to mention that all species in Argentina have overlapping distribution ranges. In summary, this study provides valuable insights into the diversity and distribution of Molossus bats in Argentina, employing molecular and morphological analyses. The discovery of a new species underscores the ongoing importance of comprehensive research efforts in understanding and conserving bat populations in the Neotropics.

HTML

XML

PDF

DOI: 10.3897/vz.74.e122418

Authors: Jason R. Ali, Uwe Fritz

Abstract: Abstract Our focus is the colonization history of the Galápagos’ vertebrate clades: 11 land-bound groups (eight reptiles, three rodents) and 13 taxa of flyers and swimmers (ten winged birds, two pinnipeds, one penguin). Using ‘colonization intervals’ and ‘colonization profiles’, it is clear that the two sets of taxa assembled very differently. The former includes older clades with between one, and potentially eight, predating the emergence of the oldest island (4 Mya). For the origin of some lineages, now-sunken landmasses associated with the Galápagos mantle-plume hotspot must have been involved, but for others it could reflect taxonomic uncertainties. In contrast, the taxa of flyers and swimmers are markedly younger, indicating either higher rates of colonization and extirpation for these sorts of animal, or continued genetic influx from mainland populations, or some combination of both factors. Concerning the first, possible drivers are the environmental stressors associated with the El Niño–La Niña climate system; the recent clades may be vulnerable to extreme events within the oscillation sequence, perhaps on ≥104-year timescales. Therefore, loose temporal thresholds might exist for the archipelago’s vertebrate groups beyond which selection fortifies them from the most challenging of seasonal states. Moreover, in a world of climate uncertainty, the findings appear relevant to conservation initiatives suggesting a focusing on the younger elements within the Galápagos’ biota.

HTML

XML

PDF

DOI: 10.3897/vz.74.e112132

Authors: Parinya Pawangkhanant, Nikolay A. Poyarkov, Harry Ward-Smith, Rupert Grassby-Lewis, Montri Sumontha, Nikita S. Kliukin, Sabira S. Idiiatullina, Alexei V. Trofimets, Chatmongkon Suwannapoom, Justin L. Lee

Abstract: Abstract We describe a new species of kukri snake (Oligodon Fitzinger, 1826) from the limestone karst formations of Satun and Trang Provinces in southern Thailand. Phylogenetic analyses based on three mitochondrial DNA fragments (12S–16S ribosomal rRNA and cytochrome b) recover the new species within the Oligodon cinereus species complex, where it forms a deeply divergent yet poorly supported clade sister to Oligodon saiyok Sumontha et al., 2017 and another unnamed lineage currently referred to Oligodon cinereus (Günther, 1864) from southwest Myanmar. Morphologically, the new species is distinguished from all other members of the genus by the following combination of characters: ventral scales 189–193 with distinct lateral keeling; subcaudal scales 47–54, paired; anterior dorsal scale rows 17–19, with the reduction from 19 to 17 rows occurring above the 28th–30th ventral scale when present; maxillary teeth 8, blade-like and laterally compressed; dorsum olive–gray, plain; ventral surface white anteriorly, dark gray posteriorly; underside of tail dark gray, smeared with white. We briefly discuss the natural history and conservation status of this new species and provide observations of other kukri snakes inhabiting limestone karst habitats. Our study also incorporates genetic samples of four recently described Oligodon endemic to Thailand, all of which are recovered in the O. cinereus species complex. In agreement with previous studies, we demonstrate that species-level diversity within the O. cinereus species complex is underestimated, and additional sampling is necessary to revise this taxonomically challenging clade.

HTML

XML

PDF

DOI: 10.3897/vz.74.e113347

Authors: Sabira S. Idiiatullina, Tan Van Nguyen, Parinya Pawangkhanant, Chatmongkon Suwannapoom, Lawan Chanhome, Zeeshan A. Mirza, Patrick David, Gernot Vogel, Nikolay A. Poyarkov

Abstract: Abstract Despite recent progress in our understanding of diversity within the genus Trimeresurus Lacépède, 1804, the subgenus Popeia Malhotra & Thorpe, 2004, distributed across most parts of East and Southeast Asia, remains taxonomically challenging. We applied an integrative taxonomic approach including analyses of morphological data and four mitochondrial genes (12S and 16S rRNA, cytochrome b, and NADH dehydrogenase subunit 4), along with examination of available type material, to address longstanding taxonomic questions in one clade within Popeia, the T. popeiorum group, and reveal a high level of hidden diversity of these snakes in the Indo-Burma Biodiversity Hotspot. We confirm that T. popeiorum Smith, 1937 sensu stricto is restricted to Northeast India, eastern Nepal, southern Bhutan, southeastern Bangladesh, western Yunnan Province (China), and northern and southwestern Myanmar. We further confirm that the recently described species T. yingjiangensis Chen et al., 2019 is a junior synonym of T. popeiorum. In addition, we discovered that the combination Trimesurus [sic] elegans Gray, 1853 is a valid senior synonym of T. popeiorum and threatens the stability of the latter taxon. Therefore, in order to protect the nomen popeiorum and in accordance with Article 23.9 of the International Code of Zoological Nomenclature, we regard the taxon Trimesurus elegans as a nomen oblitum and render Trimeresurus popeiorum a nomen protectum. Examination of a larger series of specimens allows us to describe two new cryptic species of Trimeresurus from the Indo-Burma Region. This study brings the total number of species in the subgenus Popeia to six and also suggests that the subspecific taxonomy of the T. sabahi complex requires further investigation. We urge adequate actions regarding the conservation of the newly discovered species and recommend further studies on their toxicology.

HTML

XML

PDF

DOI: 10.3897/vz.74.e114285

Authors: Stephen Mahony, Rachunliu G. Kamei, Rafe M. Brown, Kin Onn Chan

Abstract: Abstract Although the differentiation of clades at the species level is usually based on a justifiable and testable conceptual framework, the demarcation of supraspecific boundaries is less objective and often subject to differences of opinion. The increased availability of large-scale phylogenies has in part promulgated a practice of what we consider excessively splitting clades at the “genus” level. Many of these new genus-level splits are predicated on untenable supporting evidence (e.g., weakly supported phylogenies and purportedly “diagnostic” but actually variable, non-exclusive, or otherwise problematic opposing character state differences) without careful consideration of the effects on downstream applications. As case studies, we critically evaluate several recent examples of splitting established monophyletic genera in four amphibian families that resulted in the creation/elevation of 20 genus-level names (Dicroglossidae: Phrynoglossus, Oreobatrachus, Frethia split from Occidozyga; Microhylidae: Nanohyla split from Microhyla; Ranidae: Abavorana, Amnirana, Chalcorana, Humerana, Hydrophylax, Indosylvirana, Papurana, Pulchrana, Sylvirana split from Hylarana; Rhacophoridae: Tamixalus, Vampyrius, Leptomantis, Zhangixalus split from Rhacophorus, Rohanixalus split from Feihyla, Orixalus split from Gracixalus, and Taruga split from Polypedates), and also address the taxonomic status of the monotypic genus Pterorana relative to Hylarana. We reassess the original claims of diagnosability and justifications for splitting and argue that in many cases, the generic splitting of clades is not only unnecessary but also destabilizes amphibian taxonomy, leading to a host of downstream issues that affect categories of the user community (stakeholders such as taxonomists, conservationists, evolutionary biologists, biogeographers, museum curators, educators, and the lay public). As an alternative, we advocate for the use of the subgenus rank in some cases, which can be implemented to establish informative partitions for future research without compromising on information content, while avoiding gratuitous (and often transient) large-scale binomial (genus-species couplet) rearrangements. We encourage taxonomists to consider the actual needs and interests of the larger non-taxonomic end-user community who fund the majority of taxonomic research, and who require a system that remains reasonably stable and is relatively intuitive, without the need for inaccessible laboratory equipment or advanced technical scientific knowledge to identify amphibian species to the genus level.

HTML

XML

PDF

DOI: 10.3897/vz.74.e112782

Authors: Alex Slavenko, Stephen J. Richards, Stephen C. Donnellan, Allen Allison, Paul M. Oliver

Abstract: Abstract Skinks are the most diverse component of the reptile fauna in the mountains of New Guinea and many seemingly specialised high-elevation species remain undescribed. Here we describe two spectacular new gold-patterned skinks in the montane-specialist genus Papuascincus. Both species can be diagnosed from all congeners by their distinctive colouration, in addition to aspects of scalation and body size. One new species is mainly recorded from lower montane forest in karst habitats spanning more than five hundred kilometres along the southern edge of New Guinea’s Central Cordillera and is likely to warrant an IUCN conservation status of Least Concern. The second new species has thus far only been recorded from cloud forest on the summit of Mt. Menawa in the North Coastal Ranges and we suggest it should be considered Data Deficient. However, if further survey work confirms a restricted distribution with little scope for upslope elevational retreat under future warming climates it will likely qualify for Endangered or Critically Endangered status.

HTML

XML

PDF

DOI: 10.3897/vz.74.e110674

Authors: Ishan Agarwal, Tejas Thackeray, Akshay Khandekar

Abstract: Abstract Subdoluseps is a recently described genus of Lygosomine skinks distributed in peninsular India and Southeast Asia. We conduct the first revision of Indian Subdoluseps based on range-wide sampling including 89 specimens from 33 localities. We use two mitochondrial and three nuclear markers, 58 morphological characters, and ecological data to reconstruct the evolutionary history of Indian Subdoluseps and assess their diversity and distribution, providing insights into lygosominin biogeography. We formally describe the Indian clade as a new genus, Dravidoseps gen. nov. and name five new species from Tamil Nadu, India in an integrative taxonomic framework – D. gingeeensis sp. nov., D. jawadhuensis sp. nov., D. kalakadensis sp. nov., D. srivilliputhurensis sp. nov., and D. tamilnaduensis sp. nov.. We transfer Riopa goaensis, Subdoluseps pruthi and S. nilgiriensis to the new genus and designate neotypes for the former two. Members of Dravidoseps gen. nov. are the first known viviparous skinks from peninsular India and the only known viviparous lygosominins apart from a few species of east African Mochlus. The Lygosomini have a Southeast Asian origin and began diversifying in the Eocene with three dispersals between India and Southeast Asia. Species level diversification in Dravidoseps gen. nov. was likely driven by a combination of niche conservatism, paleoclimate and past forest distribution. The discovery of a new genus and five new species reiterates the high levels of diversity and endemism present in peninsular India and how much more remains to be discovered.

HTML

XML

PDF

DOI: 10.3897/vz.73.e109309

Authors: Ernesto Castillo-Urbina, Miguel Vences, César Aguilar-Puntriano, Frank Glaw, Jörn Köhler

Abstract: Abstract We studied the taxonomic status of a population of Pristimantis from the southern Cordillera Azul, Departamento Huánuco, central Peru. A phylogenetic analysis based on the mitochondrial 16S rRNA gene revealed that it represents a lineage within the Pristimantis lacrimosus species group, being the closest relative of a species of uncertain taxonomic status from a lowland rainforest in central Peru (Panguana), and P. pulchridormientes from the Tingo Maria National Park. However, the focal lineage is divergent from all nominal species in the P. lacrimosus group for which respective data are available by >7.9% uncorrected pairwise distance in the 16S rRNA gene fragment. An integrative taxonomic approach, including morphological and bioacoustic analyses, provided multiple lines of evidence for the focal specimens belonging to an unnamed evolutionary lineage at the species level that we describe and name herein. The systematics of Peruvian populations associated with the P. lacrimosus group are discussed, particularly highlighting problematic taxa with uncertain taxonomic status and unknown relationships. We point to scientific challenges and actions needed to achieve a better taxonomic resolution of this species-rich clade of frogs.

HTML

XML

PDF

DOI: 10.3897/vz.73.e110626

Authors: Karin Tamar, Marek Uvizl, Mohammed Shobrak, Mohammed Almutairi, Salem Busais, Al Faqih Ali Salim, Raed Hamoud M. AlGethami, Abdulaziz Raqi AlGethami, Abdulkarim Saleh K. Alanazi, Saad Dasman Alsubaie, Laurent Chirio, Salvador Carranza, Jiří Šmíd

Abstract: Abstract A recent molecular phylogeny of the agamid genus Pseudotrapelus, distributed in the rocky areas of North Africa and the Arabian Peninsula, revealed the presence of a genetically distinct lineage around the city of Riyadh in central Saudi Arabia. With the inclusion of additional specimens, we were able to describe this lineage as a new species, P. tuwaiqensis sp. nov., confined to the Tuwaiq Escarpment, thus endemic to central Saudi Arabia. Our results of morphological examinations and molecular analyses, using three mitochondrial (COI, 16S, ND4-tRNAs) and two nuclear (c-mos, MC1R) gene fragments, show the new species is genetically differentiated and phylogenetically close to P. sinaitus and P. chlodnickii.

HTML

XML

PDF

DOI: 10.3897/vz.73.e102475

Authors: Jennifer A. Sheridan, Somphouthone Phimmachak, Niane Sivongxay, Bryan L. Stuart

Abstract: Abstract The Lao torrent frog Amolops cremnobatus Inger & Kottelat, 1998 was recently hypothesized, based on mitochondrial DNA, to consist of more than a single species across its range in Laos and flanking regions of Vietnam and Thailand. We tested this hypothesis using mitochondrial DNA, nuclear DNA, and quantitative and qualitative morphological data from adults and larvae. We found corroborating lines of evidence for five distinct evolutionary lineages that we hypothesize to be species. Amolops cremnobatus sensu stricto is restricted to the southeastern portion of its previous range, and remaining populations are described as four new species. Some of the new species are easier to diagnose with morphology as larvae than as adults. Further sampling in northern Thailand may reveal an additional species of this torrent frog complex.

HTML

XML

PDF

DOI: 10.3897/vz.73.e110512

Authors: Akshay Khandekar, Tejas Thackeray, Ayuthavel Kalaimani, Ishan Agarwal

Abstract: Abstract We describe two new small-bodied, sympatric species of south Asian Cnemaspis belonging to the mysoriensis + adii clade from the Gingee Hills in Tamil Nadu, peninsular India. The two new species can be easily distinguished from the other eight described members of the mysoriensis + adii clade by their dorsal pholidosis, the configuration of femoral and precloacal pores in males, a number of meristic characters and subtle differences in colouration, beside 6.7–20.8 % uncorrected pairwise ND2 sequence divergence. The two species represent different ecomorphs, one a stouter, microhabitat generalist and the other a more slender, elongate rock specialist. The discovery of two new species from granite boulder habitats and Tropical Dry Evergreen Forests is indicative of the importance of these areas for biodiversity. It is likely that similar rocky habitats across southern peninsular India will harbour many more undescribed species.

HTML

XML

PDF

DOI: 10.3897/vz.73.e109854

Authors: Sabira S. Idiiatullina, Parinya Pawangkhanant, Tanapong Tawan, Thanawut Worranuch, Bunyarit Dechochai, Chatmongkon Suwannapoom, Tan Van Nguyen, Lawan Chanhome, Nikolay A. Poyarkov

Abstract: Abstract We describe a new species of pitvipers from Trang Province of Thailand, near the Thailand–Malaysian border, based on morphological and molecular (2427 bp from cyt b, ND4, and 16S rRNA mitochondrial DNA genes) lines of evidence. Morphologically, Trimeresurus ciliaris sp. nov. is distinguished from its congeners by the following combination of morphological characters: a long papillose hemipenis; first supralabial and nasal scale fused; three to four small supraocular scales; internasals not in contact; small scale between nasal and the scale formed by the fused second supralabial and loreal present; dorsal scales in 17–17–15 rows across the body; ventral scales 172–175 in males, 171 in female; subcaudal scales 59–63 in males, 61 in female, all paired; in life an emerald-green dorsum with reddish-brown bands; creamy-white venter lacking dark dots or stripes on the lateral sides of the ventrals; white vertebral spots present in both sexes on every two or three dorsal scales; dark brown spots forming discontinuous pattern present on 1–3 lateral dorsal scale rows; males with reddish-brown postocular stripe. The new species forms a distinct clade on the phylogenetic tree of the genus Trimeresurus and differs from the morphologically similar species T. venustus by a significant divergence in cytochrome b mitochondrial DNA gene sequences (p = 12.5%). The new species is currently known from a small karstic area in the Nakawan Range spanning the border of Thailand and Malaysia, in particular in limestone forests in Trang and Satun provinces (Thailand); it likely also occurs in the adjacent parts of Perlis State (Malaysia). Our study also suggests that the taxonomy of T. kanburiensis species complex requires further studies; in particular our study suggests that the status of populations from Chumphon Province of Thailand and Pulau Langkawi Island of Malaysia should be re-assessed.

HTML

XML

PDF

DOI: 10.3897/vz.73.e95639

Authors: Michael F. Bates, Javier Lobón-Rovira, Edward L. Stanley, William R. Branch, Pedro Vaz Pinto

Abstract: Cordylus angolensis (Bocage, 1895) was described 128 years ago on the basis of a single specimen collected at Caconda in the west-central highlands of Angola. Additional specimens referred to this species were collected at ‘Mombolo’ (also in the central highlands) during the Vernay Angola Expedition in 1925. As the holotype was apparently destroyed in the fire of 1978 at the Museu Bocage in Lisbon and no additional specimens have been collected, its taxonomic status and phylogenetic relationships has remained uncertain. The species has eluded all efforts aimed at its re-discovery in the vicinity of the type locality, with a single specimen from near Condé, north of Mombolo—collected in 1970 by Wulf Haacke—the only other specimen of Cordylus known from west-central Angola. Recent field work in the Angolan highlands resulted in the collection of a series of specimens from Taqueta Mountain (west of Caconda), Monte Verde (Sandula, ‘Mombolo’) and Uassamba (Vondo). A phylogenetic analysis, using three mitochondrial and six nuclear genes, indicated the existence of two distinct species-level lineages in the Angolan highlands. These two species are allopatric and morphologically distinct, differing especially in terms of their colour patterns, eye colour and certain scalation characteristics. We therefore confirm that C. angolensis is a valid species and designate a neotype, and describe a new species, Cordylus momboloensis sp. nov.

HTML

XML

PDF

DOI: 10.3897/vz.73.e102098

Authors: Sarah Mângia, Diego José Santana, Leandro de Oliveira Drummond, Leandro Talione Sabagh, Luiz Ugioni, Paulo Nogueira Costa, Milena Wachlevski

Abstract: The number of described species of Brachycephalus has rapidly increased in the last decade (n = 22, which represents 56% of the total). Species of the genus Brachycephalus are mostly distributed in isolated mountaintops from Bahia (northeastern Brazil) to Santa Catarina states (southern Brazil), each one occupying only one or a few adjacent mountaintops. Herein, we described a new species of Brachycephalus of the B. pernix group, from Serra do Tabuleiro in Santa Catarina state, which also represents the southernmost known species. The new species can be distinguished from its congeners by a combination of characters, including the following: (1) “bufoniform” body; (2) small adult SVL: 9.57–11.10 mm for males and 10.88–12.70 mm for females; (3) head proportionally small (HL/SVL 19–28%) and eye proportionally large (ED/HL 36–56%); (4) dorsum texture rough; (5) snout shape rounded in dorsal and lateral views; (6) general dorsal body color olive green with head, arms and legs yellow-orangish scattered with olive green, and an orangish vertebral stripe spotted with white and brown colors; (7) skull and skeleton without hyperossification; (8) frontoparietal and sphenethmoid not fused; (9) advertisement with one or two high-frequency notes (6,115–6,562 Hz), and 2–4 pulses per note. The type locality is adjacent to Parque Estadual da Serra do Tabuleiro, a protected area, but we observed various agricultural activities in this locality, including the presence of exotic plants, which can change the amount and the quality of leaf litter, somehow compromising the population of the new species. Another aggravating factor is that the municipality of São Bonifácio has conflicts over land use with irregular occupation and unfinished expropriation processes in Parque Estadual da Serra do Tabuleiro. Considering that Brachycephalus sp. nov. is probably a mountaintop microendemic species, it is paramount that future studies quantifying the new species’ full distribution and evaluating population trends to accurately assess its conservation status.

HTML

XML

PDF

DOI: 10.3897/vz.73.e104438

Authors: Uwe Fritz, Christian Kehlmaier, Rodney J. Scott, Raúl Fournier, James R. McCranie, Natalia Gallego-García

Abstract: Using 3226-bp-long mtDNA sequences and five nuclear loci (Cmos, ODC, R35, Rag1, Rag2, together 3409 bp), we examine genetic differentiation and relationships of Central American slider turtles (Trachemys grayi, T. venusta). Our investigation also included samples from taxa endemic to North America (T. gaigeae, T. scripta), the Antilles (T. decorata, T. decussata, T. stejnegeri, T. terrapen), and South America (T. dorbigni, T. medemi plus the two T. venusta subspecies endemic to northern South America). Our mitochondrial phylogeny retrieves all studied species as distinct, with three well-supported clades in a polytomy: (1) the Central and South American species (T. grayi + T. venusta) + (T. dorbigni + T. medemi), (2) the Antillean species, and (3) T. gaigeae + T. scripta. Our nuclear DNA analyses also suggest three distinct but conflicting clusters: (1) T. scripta plus the Antillean species, (2) T. gaigeae, and (3) the Central and South American species T. dorbigni, T. grayi, T. medemi, and T. venusta. However, in the mitochondrial phylogeny, T. gaigeae is the little divergent sister taxon of T. scripta. This conflicting placement of T. gaigeae suggests a distinct evolutionary trajectory and old hybridization with T. scripta and mitochondrial capture. Despite prominent color pattern differences, genetic divergences within T. grayi and T. venusta are shallow and the taxonomic diversity of each species with several currently recognized subspecies could be overestimated. Finally, we provide for the first time evidence for the occurrence of T. grayi along the Caribbean versant of Costa Rica.

HTML

XML

PDF

DOI: 10.3897/vz.73.e95220

Authors: Petr Papežík, Peter Mikulíček, Michal Benovics, Monika Balogová, Lukáš Choleva, Marie Doležálková-Kaštánková, Petros Lymberakis, Edvárd Mizsei, Simona Papežíková, Nikos Poulakakis, Enerit Saçdanaku, Márton Szabolcs, Radek Šanda, Marcel Uhrin, Jasna Vukić, Daniel Jablonski

Abstract: The genus Pelophylax (water frogs) includes relatively common, widely distributed, and even invasive species, but also endemic taxa with small ranges and limited knowledge concerning their ecology and evolution. Among poorly studied species belong endemics of the southwestern Balkans, namely Pelophylax shqipericus, P. epeiroticus and P. kurtmuelleri. In this study, we focused on the genetic variability of these species aiming to reveal their phylogeographic patterns and Quaternary history. We used 1,088 published and newly obtained sequences of the mitochondrial ND2 gene and a variety of analyses, including molecular phylogenetics and dating, historical demography, and species distribution modeling (SDM). We revelated the existence of two mitochondrial lineages within P. epeiroticus and P. shqipericus that diverged at ~ 0.9 Mya and ~ 0.8 Mya, respectively. Contrarily, no deeply diverged lineages were found in P. kurtmuelleri. Pelophylax kurtmuelleri also shows a close phylogenetic relationship with widely distributed P. ridibundus, suggesting that both represent one evolutionary clade called here P. ridibundus/kurtmuelleri. The estimated split between both lineages in the clade P. ridibundus/kurtmuelleri date back to ~ 0.6 Mya. The divergence between the ridibundus and kurtmuelleri lineages on the ND2 gene is thus lower than the divergence between the two lineages found in P. epeiroticus and P. shqipericus. According to haplotype networks, demographic analyses, and SDM, endemic water frogs survived the last glacial maximum (LGM) in Balkan microrefugia, and their distribution has not changed significantly or even retracted since the LGM. Haplotypes of the kurtmuelleri lineage were also found in northern parts of Europe, where haplotype diversity is however much lower than in the Balkans, suggesting the possible hypothesis of their postglacial expansion to the north.

HTML

XML

PDF

DOI: 10.3897/vz.73.e104494

Authors: Surya Narayanan, Peter Christopher, Kothandapani Raman, Nilanjan Mukherjee, Ponmudi Prabhu, Maniezhilan Lenin, Sivangnanaboopathidoss Vimalraj, V. Deepak

Abstract: A new large-bodied (SVL 101–109 mm) gecko of the genus Hemidactylus is described from the Gingee Hills in the Eastern Ghats of India. The new species is closely related to H. graniticolus and the recently described H. easai, from which it can be distinguished by its lower femoral pores count. The new species described here was previously identified as H. cf. graniticolus based only on the molecular data, pending its formal description. Our findings were consistent with the results from the molecular DNA analyses, showing that this population is morphologically distinct from other closely related species. As a result, we formally describe this lineage as a new species, providing a comprehensive description of its morphological characteristics based on a type series of five specimens and compare it with its congenerics.

HTML

XML

PDF

DOI: 10.3897/vz.73.e101871

Authors: Akshay Khandekar, Tejas Thackeray, Rameshwaran Mariappan, Satpal Gangalmale, Vivek Waghe, Swapnil Pawar, Ishan Agarwal

Abstract: We describe a new species of Hemidactylus based on an integrative taxonomic framework from scrub habitats at the southern tip of India, in Thoothukudi District, Tamil Nadu. The new species has the most densely packed tubercles among Indian Hemidactylus, almost resembling the most tuberculate Indian Cyrtopodion. Hemidactylus quartziticolus sp. nov. is phylogenetically placed within the brookii group of Indian Hemidactylus, where it is sister to the H. gleadowi complex from western-central India. The new species is 14.5–23.7% divergent in ND2 mitochondrial sequence data from other brookii group members, and can be easily diagnosed from regional congeners by its unique dorsal scalation, the number and arrangement of precloacal-femoral pores, the number of dorsal tubercle rows at midbody, number of lamellae under digit I and IV of manus and pes. The new species is currently known only from two isolated, low quartzite hillocks 45 km apart with scrubby, thorn forests and loose, stony soil.

HTML

XML

PDF

DOI: 10.3897/vz.73.e94063

Authors: Thore Koppetsch, Maciej Pabijan, Carl R. Hutter, Jörn Köhler, Philip-Sebastian Gehring, Andolalao Rakotoarison, Fanomezana M. Ratsoavina, Mark D. Scherz, David R. Vieites, Frank Glaw, Miguel Vences

Abstract: The small arboreal frog Guibemantis liber (Anura: Mantellidae) has served as an example for the existence of deep conspecific lineages that differ by a substantial amount in mitochondrial DNA but are similar in morphology and bioacoustics and thus are assigned to the same nominal species. During fieldwork in northern Madagascar, we identified additional such lineages and surprisingly, observed close syntopy of two of these at various sites. In-depth study based on DNA sequences of the mitochondrial cytochrome b gene from 338 specimens of G. liber sensu lato from across its range, sequences of four nuclear-encoded markers for 154‒257 of these specimens, a phylogenomic dataset obtained by the FrogCap target capture approach, and additional mitochondrial genes for representatives of most mitochondrial lineages, as well as bioacoustic and morphological comparisons, revealed concordant differentiation among several lineages of the G. liber complex. We identify nine lineages differing by 5.3‒15.5% in cytochrome b and 2.4‒10.1% in the 16S rRNA gene, and find that several of these lack or have only limited allele sharing in the nuclear-encoded genes. Based on sympatric or parapatric occurrence without genetic admixture, combined with differences in bioacoustic and morphological characters, we scientifically name three lineages from northern Madagascar as new species: G. razoky sp. nov., G. razandry sp. nov., and G. fotsitenda sp. nov. Of these new species, G. razoky sp. nov. and G. razandry sp. nov. show widespread syntopy across northern Madagascar and differ in body size and advertisement calls. Guibemantis fotsitenda sp. nov. is sister to G. razandry sp. nov., but appears to occur at lower elevations, including in close geographic proximity on the Marojejy Massif. We also detected subtle differences in advertisement calls among various other mitochondrial lineages distributed in the Northern Central East and Southern Central East of Madagascar, but the status and nomenclatural identity of these lineages require further morphological and bioacoustic study of reliably genotyped individuals, and assignment of the three available names in the complex: Rhacophorus liber Peracca, 1893, Gephyromantis albogularis Guibé, 1947, and Gephyromantis variabilis Millot and Guibé, 1951. We discuss the identity and type material of these three nomina, designate a lectotype for Gephyromantis variabilis from Itremo, and flag the collection of new material from their type localities, Andrangoloaka and Itremo, as paramount for a comprehensive revision of the G. liber complex.

HTML

XML

PDF

DOI: 10.3897/vz.73.e98170

Authors: Angele Martins, Manuella Folly, Guilherme Nunes Ferreira, Antônio Samuel Garcia da Silva, Claudia Koch, Antoine Fouquet, Alessandra Machado, Ricardo Tadeu Lopes, Roberta Pinto, Miguel Trefaut Rodrigues, Paulo Passos

Abstract: Threadsnakes are known for their conserved external morphology and historically controversial systematics, challenging taxonomic, biogeographic and evolutionary researches in these fields. Recent morphological studies—mostly based on µCT data of the skull and lower jaw—have resolved systematic issues within the group, for instance leading to the description of new taxa or re-positioning little-known scolecophidian taxa in the tree of life. Herein we describe a new polymorphic species of the genus Siagonodon from Amazonia based on morphological (external, osteology and hemipenis) and molecular data, and provide the first hemipenial description for the genus. We also reassign Siagonodon acutirostris to the genus Trilepida based on osteological data in combination with molecular evidence. The new species described represents an evolutionary paradox for scolecophidians because the species displays a remarkable variation in the shape of the snout region that is otherwise always highly conserved in this clade. Finally, this study reinforces the importance of protected areas as essential in maintaining vertebrate populations, including those that are not yet formally described.

HTML

XML

PDF

DOI: 10.3897/vz.73.e94111

Authors: Willem G. Coetzer

Abstract: The greater cane rat (Thryonomys swinderianus) is an African rodent with a wide Sub-Saharan distribution range. This species is viewed as an important protein source in many African countries. These rodents are also regularly viewed as a pest species who frequently raid croplands in agricultural settings. No phylogenetic work has to date been published on T. swinderianus from southern Africa. This paper therefore reports the first phylogenetic assessment on the species across the South African distribution range. Thirty samples were sourced from local museum collections, with one direct submission by a member of the public who found a rodent carcass identified as T. swinderianus west of its known distribution range in the Eastern Cape Province of South Africa. Two mitochondrial loci previously used in West African studies of this species were used in the current study to asses T. swinderianus population genetic diversity and phylogenetic structure across the South African distribution. A comparison to sequence data from West Africa was also performed. A divergence time estimation was conducted to further investigate the evolutionary history of the South African sub-population. Similar genetic diversity estimates were observed for the South African sub-population when compared to the West African datasets. Specimens from the eastern parts of South Africa showed higher genetic diversity estimates, possibly indicative of an initial colonisation site from eastern Africa. Two distinct phylogenetic clades were identified by Bayesian inference, forming distinct West African and South African groups. The divergence estimates showed similar ages for the T. swinderianus most recent common ancestor (MRCA) as previously reported. The MRCA estimates for the South African group identified a possible middle to late Pleistocene migratory event from eastern African into southern Africa. Further fine scale sampling across the African distribution range is however needed to provide more accurate assessments for future conservation management planning for the different sub-populations, as needed.

HTML

XML

PDF

DOI: 10.3897/vz.73.e90979

Authors: Suranjan Karunarathna, Kanishka D. B. Ukuwela, Anslem De Silva, Aaron M. Bauer, Majintha Madawala, Nikolay A. Poyarkov, Madhava Botejue, Dinesh Gabadage, L. Lee Grismer, Vladislav A. Gorin

Abstract: Sri Lanka is a local hotspot for Cnemaspis day geckos with 40 currently known species with 100% endemism. In this paper, we evaluate the phylogenetic relationships of Cnemaspis species belonging to the alwisi group of the podihuna clade and describe two additional new species of Cnemaspis from Sri Lanka; one from Galgiriya mountain, Kurunegala District, and another from Ethagala mountain, Ampara District. These new species were recorded from granite caves within forested areas in isolated mountains in the dry bioclimatic zone (point-endemics). Both new species are microhabitat specialists with narrow niches limited to humid, cool, canopy-shaded granite caves and old buildings associated with granite caves, where they are camouflaged by their cryptic morphology and body colouration. Furthermore, both species prefer narrow (~ 6–12 mm), long (~ 120–450 mm) and deep (~ 80–260 mm) crevices as refugia. The regions in which these habitats are located receive relatively low annual rainfall (1,000–1,500 mm). These new species are medium in size (28.5–36.8 mm SVL) and can be differentiated from all other Sri Lankan Cnemaspis by the presence of clearly enlarged, subhexagonal subcaudal scales and the absence of precloacal pores in males. Both species described here are categorised herein as Critically Endangered (CR) under the IUCN Red List criteria. The major threats for these new species are habitat loss due to expansion of commercial-scale agriculture, illicit forest encroachments, and forest fires. Therefore, we recommend that relevant authorities take immediate conservation action to ensure the protection of these forest areas with their buffer zones in the near future.

HTML

XML

PDF

DOI: 10.3897/vz.73.e101311

Authors: Surya Narayanan, Saunak Pal, L. Lee Grismer, N. A. Aravind

Abstract: We describe a new species of rupicolous Cnemaspis from the Male Mahadeshwara Wildlife Sanctuary in the Eastern Ghats. The current description is based on a type series of eight specimens that bear a unique combination of morphological and colour pattern characteristics that do not occur in other closely related species. Maximum likelihood and Bayesian analyses based on the mitochondrial gene ND2 recovered the new species to be nested within the gracilis clade and the sister species to the recently described C. agarwali from the Eastern Ghats.

HTML

XML

PDF

DOI: 10.3897/vz.73.e94265

Authors: Rafael A. Moreno-Arias, Miguel A. Méndez-Galeano, Iván Beltrán, Mario Vargas-Ramírez

Abstract: The Anolis heterodermus group comprises eight big-headed and short-legged lizard species from the highlands of the northernmost South American Andes. Recent studies revealed unknown lineages within this group that had previously been categorized as a species complex. By widely sampling and applying an integrative taxonomic framework, we (1) assessed the species diversity of the group using a molecular dataset (two mitochondrial and one nuclear markers) along with an inclusive morphological study (scalation, scale configuration and ornamentation, morphometrics, and dewlap and body colour patterns); and (2) we inferred the evolutionary relationships within this species group. Our analyses confirmed the formerly reported differentiation between populations of those high-altitude lizards, and we identified several unknown evolutionary lineages. Our results provided evidence for the existence of nine distinct, independently evolving evolutionary lineages in the heterodermus group. As a result, we described two morphologically and genetically highly distinct lineages as species new to science (A. quimbaya sp. nov. and A. tequendama sp. nov.). We redescribed A. heterodermus and erected as a valid species Anolis richteri, a previously described synonym of A. heterodermus. A taxonomic key for the identification of species of the Phenacosaurus clade was presented. The identification of two additional poorly-known lineages suggested that the diversity of this group of lizards is still unknown; therefore, it is necessary to establish measurements for the group´s conservation, as well as to perform fieldwork and revision of herpetological collections to identify possible hidden diversity within the group.

HTML

XML

PDF

DOI: 10.3897/vz.73.e91230

Authors: Platon V. Yushchenko, Justin L. Lee, Thy Neang, Hun Seiha, Nguyen Van Tan, Gernot Vogel, Nikolay A. Poyarkov Jr.

Abstract: The ashy kukri snake Oligodon cinereus (Günther, 1864) is a widely distributed and morphologically variable species found throughout mainland Southeast Asia. In this paper, we re-assessed the taxonomic status of O. cinereus populations found in southern Indochina (southern Vietnam, Cambodia, and southern Laos), including the recently described Cat Tien kukri snake Oligodon cattienensis Vassilieva et al., 2013, which was previously confused with this species. Phylogenetic analyses using mitochondrial DNA from the 12S–16S ribosomal subunit and cytochrome b gene revealed that O. cattienensis is embedded in a mixed clade containing samples of the subspecies O. cinereus pallidocinctus, which bears a dorsal color pattern with white crossbars and black edges. This clade forms a strongly supported sister group with a topotypic sample of O. cinereus cinereus, representing populations bearing a uniform dorsal color pattern and slight reticulate markings, however the genetic divergence between the two clades is very low. The morphological characters used to distinguish O. cattienensis from O. cinereus sensu lato broadly overlap and supposed differences in hemipenial morphology between the two taxa are due to outdated terminologies used to describe the organ. We relegate both O. cattienensis and O. cinereus pallidocinctus to the junior synonymy of O. cinereus and consider all color patterns of this species found near the type locality in Cambodia, southern Laos, and southern Vietnam to represent O. cinereus sensu stricto. Future integrative investigations across the range of O. cinereus sensu lato are needed to resolve the status of the remaining subspecies and synonyms associated with this taxon. Problems associated with hemipenial morphology and Oligodon systematics are also discussed.

HTML

XML

PDF

DOI: 10.3897/vz.73.e98367

Authors: Rajeev Raghavan, Remya L. Sundar, C.P. Arjun, Ralf Britz, Neelesh Dahanukar

Abstract: The lateritic aquifers of the southern Indian state of Kerala harbour a unique assemblage of enigmatic stygobitic fishes which are encountered very rarely, only when they surface during the digging and cleaning of homestead wells. Here, we focus on one of the most unusual members of this group, the catfish Horaglanis, a genus of rarely-collected, tiny, blind, pigment less, and strictly aquifer-residing species. A six-year exploratory and citizen-science backed survey supported by molecular phylogenetic analysis reveals novel insights into the diversity, distribution and population structure of Horaglanis. The genus is characterized by high levels of intraspecific and interspecific genetic divergence, with phylogenetically distinct species recovered above a 7.0% genetic-distance threshold in the mitochondrial cytochrome oxidase subunit 1 gene. Contrasting with this deep genetic divergence, however, is a remarkable stasis in external morphology. We identify and describe a new cryptic species, Horaglanis populi, a lineage that is the sister group of all currently known species. All four species are represented by multiple haplotypes. Mismatch distribution reveals that populations have not experienced recent expansions.

HTML

XML

PDF

DOI: 10.3897/vz.73.e97002

Authors: Surya Narayanan, Sandeep Das, Y. Muhammed Anvar, Frank Tillack, Pratyush P. Mohapatra, David J. Gower, K. P. Rajkumar, V. Deepak

Abstract: Colour polymorphism has been previously reported in several colubrid snakes including Boiga spp. In this paper, we report colour variations within the poorly known southern Indian Boiga dightoni, provide the first molecular data for this species, from two localities (including the type locality) and compare them with data from other congeners. Additionally, we provide detailed dentition and hemipenis descriptions for B. dightoni. Molecular data for B. dightoni show very little difference (0.2–0.4% 16S; 0.9–1.2% cyt b) to the recently described Boiga whitakeri, also from southern India. We have re-examined and present new information on the pholidosis of the type specimens of B. whitakeri and reconsider its taxonomic status. On the basis of molecular data and overlapping morphological characteristics, we argue that Boiga whitakeri and Boiga dightoni are conspecific, and place B. whitakeri under the subjective synonymy of the latter. Furthermore, we show that colour polymorphism in B. dightoni is a gender-independent character and that both colour morphs are found in high as well as low elevations and partly in sympatry. A revised key to the Boiga ceylonensis complex is provided.

HTML

XML

PDF

DOI: 10.3897/vz.72.e94799

Authors: Ishan Agarwal, Tejas Thackeray, Akshay Khandekar

Abstract: South Asian Cnemaspis are one of the most diverse clades of gekkonids in South Asia with their highest diversity in the Western Ghats and Sri Lanka. These geckos include only a few nocturnal species and are largely diurnal or cathemeral and restricted to relatively cool habitats. One of the prominently diurnal subgroups in South Asian Cnemaspis is the bangara clade, which includes six species distributed in southern India on the eastern slopes of the Western Ghats, the southern Eastern Ghats and Palghat Gap. In this paper, we describe five more species of the bangara clade from the Shevaroyan landscape, including three from Kollimalai and one each from Yercaud and Pachaimalai, all in Tamil Nadu. These new species show 4.6–19.7 % uncorrected sequence divergence on the mitochondrial ND2 gene from each other and known species of the bangara clade and are morphologically diagnosable in body size, the number of paravertebral tubercles between limb insertions, the number of dorsal tubercle rows, the number of ventral scale rows across the belly, the number of femoral and precloacal pores and poreless scales separating these series, and aspects of colouration. The discovery of these five new species adds to the growing discoveries of cool-adapted species in southern India outside the Western Ghats and highlights the role of sky-islands in diversification. The Shevaroyan landscape shows high levels of microendemism with eight species distributed in an area of < 2000 km2, and all these species restricted to much smaller areas of actual distribution. With an area of < 500 km2 respectively, the massif of Pachaimalai has a single endemic and the massifs of Yercaud and Kollimalai have three endemic Cnemaspis species each.

HTML

XML

PDF

DOI: 10.3897/vz.72.e95681

Authors: Uwe Fritz, Krystal A. Tolley, Melita Vamberger, Flora Ihlow

Abstract: Species-level phylogeny and especially phylogeography of African chelonians is a comparatively under-studied field of research. We review the current knowledge of phylogeny and phylogeography, highlight congruence of spatial phylogeographic patterns amongst chelonians and other taxa and suggest future research directions to address gaps in knowledge. Our review shows that phylogeographic and phylogenetic investigations have led to unexpected findings. For example, for Pelomedusa, a putatively wide-ranging monotypic terrapin genus, cryptic diversity was revealed, with more than ten species being uncovered. The formerly recognized tortoise genus Homopus sensu lato was found to be paraphyletic with respect to Chersina. To resolve this situation, Homopus was restricted to the four-toed species H. areolatus and H. femoralis and the genus Chersobius was resurrected for the five-toed species C. boulengeri, C. signatus, and C. solus. Three previously recognized taxa were shown to be invalid, viz. the putatively extinct terrapin species Pelusios seychellensis and the tortoise subspecies Chersobius signatus cafer and Stigmochelys pardalis babcocki. Together with taxonomy, the knowledge of phylogeographic structuring sets a solid foundation for conservation measures and allows the identification of Management and Conservation Units. However, the current legislation, in particular the enforcement of the Nagoya Protocol under the Convention of Biological Diversity (CBD), has largely halted research on widely distributed taxa and turned the well-intended concept of Access and Benefit Sharing into a major impediment for conservation and research. The current situation leads for many species to a continued usage of outdated and incorrect taxonomic classifications resulting in an error cascade of conservation decisions. This is counterproductive to the aims of the CBD, that is, the protection of biodiversity. Sequencing historical DNA from museum specimens using aDNA approaches could be a short-term approach to mitigate, but not solve, this impediment.

HTML

XML

PDF

DOI: 10.3897/vz.72.e89660

Authors: Surya Narayanan, Sandeep Das, Amirtha Balan, Roshin Tom, Nitin Divakar, Rajkumar Kp, P. Hopeland, V. Deepak

Abstract: A new species of Cyrtodactylus is described from the southern Western Ghats of India. It is distinguished from all species of the ­Cyrtodactylus collegalensis species complex in colour pattern and resembles the Srilankan endemic C. yakhuna in overall colouration. Phylogenetic analysis of mitochondrial ND2 DNA sequences indicates that the new species is most closely related to species in the C. collegalensis complex and differs from them by an uncorrected pairwise genetic distance of 10.5–12.9%.

HTML

XML

PDF

DOI: 10.3897/vz.72.e85020

Authors: Ananthanarayanan Sankar, Ingg Thong Law, Ing Sind Law, Rasu Shivaram, Robin K. Abraham, Kin Onn Chan

Abstract: The genus Micryletta, also known as paddy frogs, ranges across much of south, east, and southeast Asia. Due to their relatively broad distribution and overall morphological similarities, many species have gone undetected until recently, largely owing to the use of molecular data. Consequently, the species diversity within this genus has quadrupled in just three years from three species prior to 2018, to 12 species in 2021, indicating that the systematics of this genus is still poorly understood. As such, we assembled the most comprehensive molecular phylogeny of Micryletta hitherto including novel sequences from a previously unsampled population from Singapore to assess the species diversity within this genus. In particular, we investigate the population from Singapore whose specific identity remains in question due to the lack of voucher specimens and genetic material. Our results show that the Singapore population represents a strongly supported and distinct lineage that is most closely related to M. inornata sensu stricto from Sumatra, Indonesia. Morphological and species delimitation analyses corroborate its distinction as a new species, which we describe herein as M. subaraji sp. nov. This and recent new taxon discoveries in Singapore demonstrate that the biodiversity of the highly urbanized island-state is still far from being fully realized and underscores the need for continued systematic surveys and protection of remaining habitats.

HTML

XML

PDF

DOI: 10.3897/vz.72.e82343

Authors: Akshay Khandekar, Tejas Thackeray, Ishan Agarwal

Abstract: We describe three distinct, small-bodied, scansorial species of south Asian Cnemaspis from Kalakad Mundanthurai Tiger Reserve, Tirunelveli district, Tamil Nadu, India—Cnemaspis azhagu sp. nov. from Thirukurungudi forest range, Cnemaspis mundanthuraiensis sp. nov. from Mundanthurai forest range and Cnemaspis kalakadensis sp. nov. from Kalakad forest range. Phylogenetic analyses using a partial sequence of the mitochondrial ND2 gene and general morphology places each of the three new species in the beddomei, gracilis and littoralis clades, respectively. The three new species are diagnosed from all other described members of their respective clades by a suite of differing morphological characters including snout vent length, number of dorsal tubercle rows at mid-body, number of paravertebral tubercles, presence or absence of spine-like scales on flanks, number of ventral scales across belly at mid-body, number of ventral scales from mental to anterior border of cloaca, number of lamellae under digit IV of pes, number of femoral and/or precloacal pores and poreless scales separating these series, as well as subtle colouration differences. We also provide some novel characters of tail tuberculation of the three new species described herein. With the discovery of these three new species, eight species of geckos including five Cnemaspis are now known to be endemic to KMTR.

HTML

XML

PDF

DOI: 10.3897/vz.72.e82201

Authors: Anh The Nguyen, Tang Van Duong, Perry L. Wood Jr., L. Lee Grismer

Abstract: An integrative taxonomic analysis of species in the colubrid genus Lycodon Fitzinger, 1826 recovered two new syntopic species of the L. rufozonatus complex from the imperiled Song Giang River valley in Khan Hoa Province, of Southern Vietnam. Although L. truongi sp. nov. and L. anakradaya sp. nov. are syntopic, they are not particularly closely related and can be differentiated from each other and all other species in the L. rufozonatus complex on the basis of meristics, morphometrics, color pattern, and uncorrected pairwise genetic distance based on the mitochondrial gene cytochrome b. The discovery of these two new range-restricted species and a previously described range-restricted gekkonid in the genus Cyrtodactylus Gray, 1828 from the same valley, underscores the necessity of continued field work in the Song Giang River valley so as to catalog the unrealized herpetological diversity in this area and establish research-based conservation programs.

HTML

XML

PDF

DOI: 10.3897/vz.72.e80615

Authors: L. Lee Grismer, Attapol Rujirawan, Siriporn Yodthong, Bryan L. Stuart, Minh Duc Le, Dzung Trung Le, Yodchaiy Chuaynkern, Perry L. Wood, Jr., Anchalee Aowphol

Abstract: Abstract Convergent morphological specializations for an arboreal lifestyle in most species of the Cyrtodactylus brevipalmatus group have been a confounding factor for establishing a stable taxonomy among its species. Recent references to C. interdigitalis from throughout Thailand and Laos were made without comparisons to the type material from Tham Yai Nam Nao, Nam Nao National Park, Phetchabun Province, Thailand, but instead, were based on general morphological similarity and distribution. The taxonomy of C. interdigitalis is stabilized here by comparing the paratypes to other specimens from Thailand and Laos and recovering their phylogenetic relationships based on newly acquired genetic data, including those from the type locality. The phylogeny recovered all specimens outside the type locality to be either C. ngati from Vietnam or new species closely related to C. ngati. Cyrtodactylus interdigitalis is shown here to be a range-restricted upland endemic on the Phetchabun massif of northern Thailand. The phylogeny also indicates that C. ngati extends hundreds of kilometers farther south into northern Thailand and central Laos. We hypothesize that the significant morphological divergence in body shape of the types of C. ngati, compared to that of the Lao and Thai populations, may be due to local adaptions for utilizing karst (C. ngati) rather than vegetation (Lao and Thai populations). Additionally, phylogenetic and multivariate analyses identified a potentially new species from Phu Hin Rong Kla National Park, Phitsanulok Province, in northern Thailand and another from the Khlong Naka Wildlife Sanctuary, Ranong Province, in southern Thailand. A series of newly examined specimens from Kaeng Krachan National Park, Phetchaburi Province, Thailand represents a possible ~82 km range extension to the southeast of C. rukhadeva. This research continues to underscore the high diversity of range-restricted upland endemics in Thailand and the importance of examining type material (if possible) in the context of a phylogeny so as to construct proper taxonomies that reveal, rather than obscure, diversity.

HTML

XML

PDF

DOI: 10.3897/vz.72.e78830

Authors: Miguel Vences, Jörn Köhler, Angelica Crottini, Michael Hofreiter, Carl R. Hutter, Louis du Preez, Michaela Preick, Andolalao Rakotoarison, Loïs Rancilhac, Achille P. Raselimanana, Gonçalo M. Rosa, Mark D. Scherz, Frank Glaw

Abstract: The subgenus Laurentomantis in the genus Gephyromantis contains some of the least known amphibian species of Madagascar. The six currently valid nominal species are rainforest frogs known from few individuals, hampering a full understanding of the species diversity of the clade. We assembled data on specimens collected during field surveys over the past 30 years and integrated analysis of mitochondrial and nuclear-encoded genes of 88 individuals, a comprehensive bioacoustic analysis, and morphological comparisons to delimit a minimum of nine species-level lineages in the subgenus. To clarify the identity of the species Gephyromantis malagasius, we applied a target-enrichment approach to a sample of the 110 year-old holotype of Microphryne malagasia Methuen and Hewitt, 1913 to assign this specimen to a lineage based on a mitochondrial DNA barcode. The holotype clustered unambiguously with specimens previously named G. ventrimaculatus. Consequently we propose to consider Trachymantis malagasia ventrimaculatus Angel, 1935 as a junior synonym of Gephyromantis malagasius. Due to this redefinition of G. malagasius, no scientific name is available for any of the four deep lineages of frogs previously subsumed under this name, all characterized by red color ventrally on the hindlimbs. These are here formally named as Gephyromantis fiharimpe sp. nov., G. matsilo sp. nov., G. oelkrugi sp. nov., and G. portonae sp. nov. The new species are distinguishable from each other by genetic divergences of >4% uncorrected pairwise distance in a fragment of the 16S rRNA marker and a combination of morphological and bioacoustic characters. Gephyromantis fiharimpe and G. matsilo occur, respectively, at mid-elevations and lower elevations along a wide stretch of Madagascar’s eastern rainforest band, while G. oelkrugi and G. portonae appear to be more range-restricted in parts of Madagascar’s North East and Northern Central East regions. Open taxonomic questions surround G. horridus, to which we here assign specimens from Montagne d’Ambre and the type locality Nosy Be; and G. ranjomavo, which contains genetically divergent populations from Marojejy, Tsaratanana, and Ampotsidy.

HTML

XML

PDF

DOI: 10.3897/vz.72.e78219

Authors: Thomas E. Lee Jr., Nicolás Tinoco, Jorge Brito

Abstract: We name and describe a new species of Andean mouse from the eastern slope of the Andes of central Ecuador (Sangay National Park). This rodent is large-bodied (head-body length 167–184 mm) inhabiting the wet montane forest between 3,400–3,900 m in elevation. A molecular phylogeny based on mitochondrial genes resolved the new species as a member of the “aureus” group, closely related to an undescribed species from north Ecuador. This finding increases the diversity of Thomasomys to 48 species, of which 18 species inhabit Ecuador. In addition, the species described herein is the largest species of the genus described in Ecuador.

HTML

XML

PDF

DOI: 10.3897/vz.72.e79496

Authors: Sonali Garg, Sivaperuman Chandrakasan, G. Gokulakrishnan, C. Gopika, Indraneil Das, S. D. Biju

Abstract: Since the description of Charles Darwin’s frog as Rana charlesdarwini in 1998, its generic placement has been a taxonomic enigma. Subsequent studies first transferred this species to the dicroglossid genus Limnonectes, and then considered it as a ceratobatrachid of the genus Ingerana, which has since been moved to the family Dicroglossidae. However, recent works have doubted this generic placement and also suggested the possibility of its sister relationship with the genus Liurana, within Ceratobatrachidae. Nonetheless, there have been no detailed investigations to ascertain the generic placement of this taxon by confirming its phylogenetic position or using integrative taxonomic approaches. Here, we provide the first molecular assessment of Ingerana charlesdarwini based on mitochondrial and nuclear DNA and reveal that it is nested in the dicroglossid genus Minervarya. A member of the Minervarya andamanensis species group, Minervarya charlesdarwini comb. nov. is sister taxon to M. andamanensis and shows relatively shallow genetic distances (2.8–3.6%) in the 16S gene. Both species are widely distributed, occur sympatrically, and exhibit high morphological variations, leading to long-standing confusions with other dicroglossid frogs reported from the region. Our combined morphological and molecular studies on dicroglossid frogs sampled across the known ranges of these species suggest that reports of Limnonectes doriae (Boulenger, 1887) and L. hascheanus (Stoliczka, 1870) from the Andamans are misidentifications of the former two, pointing to the absence of genus Limnonectes from the Andaman Islands. Our study also reveals the novel record of Minervarya agricola from the Andamans, a species that appears to have been confused with Fejervarya limnocharis and Minervarya keralensis in the literature and misidentified museum specimens, and is found to be widely distributed across these islands. We further find another congener from the Nicobar group of Islands, M. nicobariensis, to be closely related to M. charlesdarwini. Similar to the case of Andaman dicroglossids, our work emphasises on the need for further studies to ascertain the taxonomic identities and generic placement of Minervarya and Limnonectes species reported from the Nicobars.

HTML

XML

PDF

DOI: 10.3897/vz.72.e76308

Authors: Akshay Khandekar, Tejas Thackeray, Ishan Agarwal

Abstract: We describe three new small-bodied, cryptic species of south Asian Cnemaspis belonging to the mysoriensis and goaensis clades from the Mysore Plateau and the Western Ghats biodiversity hotspot in Karnataka, peninsular India; and provide a key to members of each clade, besides providing the first ND2 sequence data for C. ranganaensis. Cnemaspis tigris sp. nov. from Kaiwara in Karnataka is a member of the mysoriensis clade and can be morphologically distinguished from all six described members of the clade in a number of meristic characters and subtle differences in colouration, beside ≥ 12.1–23.4 % uncorrected pairwise ND2 sequence divergence. Cnemaspis sakleshpurensis sp. nov. from Sakleshpur and C. vijayae sp. nov. from Coorg, both in the Western Ghats of Karnataka, are members of the goaensis clade and are easily diagnosed from all three described members of the clade in meristic characters beside 5.2–14.8 % divergence from described members of the clade and 14.6 % from each other in uncorrected pairwise ND2 sequence divergence. The discovery of these new species from two different clades and biogeographic regions is not surprising, given the steep rise in the number of species of Cnemaspis known from peninsular India. Comprehensive geographic sampling in conjunction with molecular and morphological data is essential to understand the true diversity and distributional ranges of species within this ancient clade of gekkonid lizards.

HTML

XML

PDF

DOI: 10.3897/vz.72.e77702

Authors: L. Lee Grismer, Lelani del Pinto, Evan S. H. Quah, Shahrul Anuar, Michael Cota, Jimmy A. McGuire, Djoko T. Iskandar, Perry L. Wood Jr, Jesse L. Grismer

Abstract: Abstract An integrative taxonomic analysis of Sundaic populations of Gekko smithii from the Thai-Malaya Peninsula, Sumatra, and Borneo recovered four deeply divergent mitochondrial lineages that are separated by major geographic barriers (mountains and seaways). Furthermore, they bear a number of concordant statistically significant differences in meristic and morphometric features, morphospatial separation in multivariate space, and discrete differences in color pattern. Gekko smithii sensu stricto is restricted to southern Thailand south of the Isthmus of Kra and Peninsular Malaysia west of the Banjaran (mountain range) Titiwangsa, being that the type locality is on Penang Island, Penang. Gekko hulk sp. nov. is a new species from extreme southern Thailand and Peninsular Malaysia east of the Banjaran Titiwangsa and five east coast islands—the type locality being Pulau (island) Tioman, Pahang. Gekko cf. albofasciolatus is tentatively used to include Bornean populations west of the Iran Mountains in Sabah and Sarawak which, in the absence of molecular data, cannot unequivocally be separated morphologically from G. albofasciolatus from the type locality at Banjarmasin, Kalimantan, Indonesia east of the Iran Mountains. In the absence of molecular data, G. albomaculatus is resurrected to include mainland Sumatran, Nias Island, and Banyak Islands populations which, based on their morphology, cannot be separated from descriptions of G. albomaculatus from the type locality of Bangka Island, 15 km off the southeast coast of mainland Sumatra. Further integrative analyses of all Sumatran and Bornean populations are currently underway as well as the enigmatic Wallacean populations from Sulawesi. Data are presented that strongly suggest all references to G. smithii from Java stem from a 151 year-old misidentification of a specimen of G. gecko of unknown provenance. Additionally, there are no vouchered records of G. smithii from Myanmar. The phylogeographic patterns of Sundaic populations of the G. smithii complex are concordant with those of a plethora of other Sundaic lineages.

HTML

XML

PDF

DOI: 10.3897/vz.71.e76453

Authors: Marika Asztalos, Dinçer Ayaz, Yusuf Bayrakcı, Murat Afsar, Cemal Varol Tok, Carolin Kindler, Daniel Jablonski, Uwe Fritz

Abstract: Using two mitochondrial DNA fragments and 13 microsatellite loci, we examined the phylogeographic structure and taxonomy of two codistributed snake species (Natrix natrix, N. tessellata) in their eastern distribution area, with a focus on Turkey. We found evidence for frequent interspecific hybridization, previously thought to be extremely rare, and for backcrosses. This underscores that closely related sympatric species should be studied together because otherwise the signal of hybridization will be missed. Furthermore, the phylogeographic patterns of the two species show many parallels, suggestive of a shared biogeographic history. In general, the phylogeographies follow the paradigm of southern richness to northern purity, but the dice snake has some additional lineages in the south and east in regions where grass snakes do not occur. For both species, the Balkan Peninsula and the Caucasus region served as glacial refugia, with several mitochondrial lineages occurring in close proximity. Our results show that the mitochondrial divergences in both species match nuclear genomic differentiation. Yet, in the former glacial refugia of grass snakes there are fewer nuclear clusters than mitochondrial lineages, suggesting that Holocene range expansions transformed the glacial hotspots in melting pots where only the mitochondrial lineages persisted, bearing witness of former diversity. On the other hand, the deep mitochondrial divergences in N. tessellata across its entire range indicate that more than one species could be involved, even though lacking microsatellite data outside of Turkey prevent firm conclusions. On the contrary, our microsatellite and mitochondrial data corroborate that N. megalocephala is invalid and not differentiated from sympatric populations of N. natrix. For Cypriot grass snakes, our analyses yielded conflicting results. A critical assessment of the available evidence suggests that N. natrix is a genetically impoverished recent invader on Cyprus and taxonomically not distinct from a subspecies also occurring in western Anatolia and the southern Balkans. Based on combined mitochondrial and nuclear genomic evidence we propose that for grass snakes the following subspecies should be recognized in our study region: (1) Natrix natrix vulgaris Laurenti, 1768, southeastern Central Europe and northern Balkans; (2) Natrix natrix moreotica (Bedriaga, 1882), southern Balkans, western Anatolia, and Cyprus; and (3) Natrix natrix scutata (Pallas, 1771), eastern Anatolia, Caucasus region, Iran, northeastern distribution range (from eastern Poland and Finland to Kazakhstan and the Lake Baikal region). Thus, Natrix natrix cypriaca (Hecht, 1930) becomes a junior synonym of N. n. moreotica and Natrix natrix persa (Pallas, 1814) becomes a junior synonym of N. n. scutata. Due to insufficient material, we could not resolve the status of Natrix natrix syriaca (Hecht, 1930) from the Gulf of İskenderun, southeastern Turkey.

HTML

XML

PDF

DOI: 10.3897/vz.71.e70989

Authors: Haithem El-Farhati, Mourad Khaldi, Alexis Ribas, Mohamed Wassim Hizem, Saïd Nouira, Violaine Nicolas

Abstract: Abstract Two species of hedgehogs are known to occur in northern part of Africa: the Algerian hedgehog Atelerix algirus and the Ethiopian hedgehog Paraechinus aethiopicus. Within each species several subspecies were described based on morphometrical data and pelage coloration, but all these subspecies have enigmatic and unclear definitions. We investigated the phylogeographical history and taxonomy of these two species based on mitochondrial DNA data covering the entire geographical distribution of A. algirus and the North African distribution of P. aethiopicus. We also used climatic niche modelling to make inferences about their evolutionary history. Low genetic diversity was recovered in both species. While no phylogeographic pattern was found in P. aethiopicus, two haplogroups were identified within A. algirus. This could be explained by the fact that continuous high or moderate climatic suitability occurred throughout most of the Saharan desert since the LGM (Last Glacial Maximum) for the first species, while during the LGM there were several disconnected areas of high climatic suitability for A. algirus: one in South-West Morocco, one at the coastal Moroccan-Algerian border and one in Tunisia-coastal Libya. Our genetic results confirm that A. algirus recently colonized Spain, Balearic and Canary Islands, and that this colonization was probably mediated by humans. Suitable climatic conditions occurred throughout most of the Southern and Eastern Iberian Peninsula during the last 6,000 years which could have favored the spatial expansion of the Algerian hedgehog after its arrival in Europe. According to our molecular results subspecific recognition within North Africa is unwarranted for both species.

HTML

XML

PDF

DOI: 10.3897/vz.71.e71995

Authors: Gustavo Campillo-García, Oscar Flores-Villela, Brett Oliver Butler, Julián Andrés Velasco Vinasco, Fabiola Ramírez Corona

Abstract: The spiny lizard genus Sceloporus was described by Wiegmann in 1828, with S. torquatus posteriorly designated as the type species. The taxonomic history of S. torquatus is complicated, as it has been confused with other taxa by numerous authors. Many modern systematics works have been published on Sceloporus, but none have included all five recognized S. torquatus subspecies: S. t. torquatus, S. t. melanogaster, S. t. binocularis, S. t. mikeprestoni, and S. t. madrensis. Additionally, there is previous evidence for at least one unnamed taxon. The present study is the first taxonomic revision of the enigmatic S. torquatus based on molecular phylogenies using combined molecular data from 12S, ND4 and RAG1 genes, and Maximum Likelihood and Bayesian inference phylogenetic methods. This work includes the most extensive sampling across the entire distribution, as well as divergence time estimates and environmental niche modelling, which combined offer a spatio-temporal framework for understanding the evolution of the species. Additionally, a series of morphological characters are analyzed to identify significant differences between lineages consistently recovered in the molecular phylogenies. Using this integrative approach, evidence is presented for eight lineages within the S. torquatus complex, five of which correspond to previously recognized subspecies and three represent unnamed taxa masked by morphological conservatism. Finally, to maintain taxonomic stability a lectotype and paralectoype are designated for S. torquatus, and certain taxonomic changes are suggested in order to reflect the phylogenetic relationships within the S. torquatus complex.

HTML

XML

PDF

DOI: 10.3897/vz.71.e75967

Authors: V. Deepak, Samuel Lalronunga, Esther Lalhmingliani, Abhijit Das, Surya Narayanan, Indraneil Das, David J. Gower

Abstract: Xenodermidae is a generally poorly known lineage of caenophidian snakes found in South, East and Southeast Asia. We report molecular phylogenetic analyses for a multilocus data set comprising all five currently recognised genera and including new mitochondrial and nuclear gene sequence data for the recently described Stoliczkia vanhnuailianai. Our phylogenetic results provide very strong support for the non-monophyly of Stoliczkia, as presently constituted, with S. borneensis being more closely related to Xenodermus than to the Northeast Indian S. vanhnuailianai. Based on phylogenetic relationships and morphological distinctiveness, we transfer Stoliczkia borneensis to a new monotypic genus endemic to Borneo, Paraxenodermus gen. nov. We also present new morphological data for P. borneensis.

HTML

XML

PDF

DOI: 10.3897/vz.71.e76069

Authors: L. Lee Grismer, Chatmongkon Suwannapoom, Parinya Pawangkhanant, Roman A. Nazarov, Platon V. Yushchenko, Mali Naiduangchan, Minh Duc Le, Vinh Quang Luu, Nikolay A. Poyarkov

Abstract: The first integrative taxonomic analysis of the Cyrtodactylus brevipalmatus group of Southeast Asia recovered two newly discovered populations from the Tenasserim Mountains in Suan Phueng District, Ratchaburi Province, Thailand as a new species described here as C. rukhadeva sp. nov. Based on 1397 base pairs of the mitochondrial gene NADH dehydrogenase subunit 2 (ND2), C. rukhadeva sp. nov. is the well-supported sister species to a clade containing three undescribed species, C. ngati, and C. cf. interdigitalis with a large uncorrected pairwise sequence divergence from other species in the brevipalmatus group ranging from 15.4–22.1%. Cyrtodactylus elok and C. brevipalmatus are recovered as poorly supported sister species and the well-supported sister lineage to the remainder of the brevipalmatus group. Cyrtodactylus rukhadeva sp. nov. is putatively diagnosable on the basis of a number of meristic characters and easily separated from the remaining species of the brevipalmatus group by a number of discrete morphological characters as well as its statistically significant wide separation in multivariate morphospace. The discovery of C. rukhadeva sp. nov. continues to underscore the unrealized herpetological diversity in the upland forests of the Tenasserim Mountains and that additional field work will undoubtedly result in the discovery of additional new species.

HTML

XML

PDF

DOI: 10.3897/vz.71.e62787

Authors: Gaurang Gowande, Saunak Pal, Daniel Jablonski, Rafaqat Masroor, Pushkar U. Phansalkar, Princia Dsouza, Aditi Jayarajan, Kartik Shanker

Abstract: Abstract The genus Calotes Cuvier, 1817 (Agamidae: Draconinae) is highly diverse, with species occurring in South and Southeast Asia, and Oceania. Most species of the subfamily except C. versicolor have narrow geographic distributions. Calotes versicolor is distributed from western Iran in the west to south China and Indonesia in the east and has been introduced to parts of Africa and North America. The species has had a complicated taxonomic history; multiple species and subspecies related to C. versicolor were described from India and adjoining regions, which were synonymized in subsequent revisions. However, a study of Burmese C. versicolor yielded two new species, C. htunwini and C. irawadi, indicating that C. versicolor is a species complex. Such integrative taxonomic studies have not been carried out in India, the supposed type locality of C. versicolor. Hence, we studied C. versicolor sensu lato from the Indian subcontinent and generated sequences of mitochondrial 16S and COI fragments from tissues sampled from multiple localities in the region, including the type localities of its synonyms. Phylogenetic analyses revealed four well-supported, deeply-divergent lineages, supported by morphological data. These lineages represent (i) C. versicolor sensu stricto, from South India and parts of the east coast, (ii) C. irawadi sensu lato from northeast India and Southeast Asia, (iii) a synonym from the eastern Indo-Gangetic Plains which we resurrect here, and (iv) a subspecies from Pakistan which we elevate to species level. We provide re-descriptions for the resurrected or elevated species, and a diagnostic key to the species of the C. versicolor complex. The study shows that C. versicolor sensu stricto is endemic to parts of southern and eastern India, and not widely distributed, though it may have been introduced to other parts of the world.

HTML

XML

PDF

DOI: 10.3897/vz.71.e66239

Authors: Ashok Kumar Mallik, Achyuthan Needamangalam Srikanthan, Sumaithangi Rajagopalan Ganesh, Seenapuram Palaniswamy Vijayakumar, Patrick D. Campbell, Anita Malhotra, Kartik Shanker

Abstract: Abstract Asian pit vipers belonging to the genus Craspedocephalus are a complex group of vipers, distributed in South and Southeast Asia. Their taxonomy is unresolved in many lineages across their distributional range. Here, we reassess the taxonomy and systematics of pit vipers of the genus Craspedocephalus in Peninsular India based on extensive field sampling, in particular in the Western Ghats. We build and expand on the previous findings of genetic relatedness between the peninsular Indian lineages with the Sundaic clade (C. puniceus complex) with greater evidence, based on additional taxa sequenced herein. We reconstruct the phylogeny of the group using three mitochondrial genes and delineated lineages using coalescent species delimitation methods. We then used multiple criteria including genetic divergence and separation in morphological and geographic space to designate taxonomic units. Our work revealed the presence of a South Asian radiation of the clade Craspedocephalus, with a few Sundaic members. Our study reveals the systematic relationships of four Peninsular Indian species of Craspedocephalus, including Peltopelor macrolepis and C. strigatus, sequenced here for the first time, that are classified or confirmed as members of Craspedocephalus. Hence, we place the genus Peltopelor in the synonymy of Craspedocephalus. Using our multi-criteria approach, we delimit four new cryptic evolutionary lineages within the Western Ghats escarpment of Peninsular India. These cryptic lineages belong to the C. malabaricus, C. gramineus and C. macrolepis complexes and are geographically and/or ecologically (in terms of habitat association) distinct from their sister lineages across their distributional range, while others are separated in morphological space. Our new phylogenetic tree and delimitation analysis thus reveals the presence of multiple clades with several cryptic lineages separated by geographical barriers or habitat association.

HTML

XML

PDF

DOI: 10.3897/vz.71.e62729

Authors: Oleg Kukushkin, Oleg Ermakov, Iulian Gherghel, Svetlana Lukonina, Anton Svinin, Igor Doronin, Evgeniy Simonov, Daniel Jablonski

Abstract: Abstract The Lindholm rock lizard, Darevskia lindholmi, is the only member of the genus Darevskia whose range is restricted solely to Europe, representing a local endemism found only in the Crimean Mountains. In our study, we investigated the cytochrome b gene (mtDNA) of 101 D. lindholmi sequences from 65 Crimean localities, representing its entire range. We found that D. lindholmi is highly genetically structured, and its range is divided into populations belonging to three mitochondrial lineages. The Lindholm rock lizard populations inhabiting the middle part of the Crimean Mountains (further referred to as the Central lineage) are sharply differentiated from the other two lineages (the Common and the Southwestern lineages), which are present in most of the species range. The genetic distance between the Central lineage and the other two taken together is 4.6%, according to our results, suggesting that the divergence occurred during the Early Pleistocene. The narrowly distributed Southwestern lineage and the widespread Common lineage, on the other hand, are differentiated by 1%. Field observations on the representatives of the main evolutionary groups show that their ecology is also different: the Central lineage is a mesophilic and cold-resistant form, while the other two closely related lineages are more xerophilic and thermophilic. Results of the potential ranges modeling and ecological niche analysis confirm that the genetic lineages occupy different niches of the Crimea. Furthermore, the area of inhabitation of the Central lineage splits the western and eastern parts of the Common lineage range, while the Southwestern lineage is restricted along the coast of the southwestern coast of the peninsula. The long-term co-existence of deeply divergent sister mitochondrial lineages in a relatively small (circa 7,000 km2) isolated mountain system serves as a mesocosm for understanding the speciation process. Our data suggest that the Central lineage warrants further taxonomic investigation.

HTML

XML

PDF

DOI: 10.3897/vz.71.e62814

Authors: Pradeep Kumkar, Manoj Pise, Pankaj A. Gorule, Chandani R. Verma, Lukáš Kalous

Abstract: The hill stream loach genus Indoreonectes is endemic to peninsular India south of the Satpura hill ranges and is represented by three species I. evezardi, I. keralensis and I. telanganaensis. Indoreonectes evezardi has been suggested as a species complex based on recent genetic studies; however, due to lack of type material the species delimitation has been difficult. Here we redescribe I. evezardi collected from its type locality and describe two new species from the northern Western Ghats of India. Indoreonectes neeleshi, described from Mula River tributary of Godavari river system, can be diagnosed from all its congeners based on a combination of characters: inner rostral barbel reaching middle of nostril; maxillary barbel reaching midway between eye and posterior border of operculum; dorsal hump behind nape; bars on lateral side of the body wider than inter-bar space; total vertebrae 35 and dorsal fin insertion between 13th and 14th abdominal vertebrae. Indoreonectes rajeevi, described from Hiranyakeshi River of the Krishna river system, differs from all its congeners based on a combination of characters: inner rostral barbel reaching anterior margin of eye; maxillary barbel reaching posterior border of operculum; conspicuous black markings on lower lip, dorsal hump absent; total vertebrae 36 and dorsal fin insertion between 12th and 13th abdominal vertebrae. Further, I. neeleshi differs from its congeners by the raw genetic distance of 6.8–14.4% for the cox1 gene and 5.7–16.2% for the cytb gene, while I. rajeevi differs from its congeners by the raw genetic distance of 10.9–14.0% for the cox1 gene and 11.8–15.8% for the cytb gene.

HTML

XML

PDF

DOI: 10.3897/vz.71.e68897

Authors: Emmanuel Matamba, Leigh R. Richards, Michael I. Cherry, Ramugondo V. Rambau

Abstract: Abstract South African small mammals are under-represented in DNA barcoding efforts, particularly from the eastern forested regions of the country. This study reports DNA barcoding of Rhabdomys taxa from previously unsampled parts of the Eastern Cape and KwaZulu-Natal provinces of South Africa. The complete mitochondrial DNA cytochrome oxidase I (COI) gene was sequenced for 101 Rhabdomys sp. individuals from 16 localities from all three main forest groups (coastal, mistbelt, and scarp forests). Molecular data were supplemented with external morphological measurements, including those deemed potential taxonomically diagnostic characters. Findings indicate the area to be inhabited solely by Rhabdomys dilectus chakae. Haplotypes distributed across the three forest groups were separated by shallow sequence divergences ranging from 0.001–0.015 (Kimura 2-parameter model) and displayed very little population genetic structure (FST= 0.071787). Morphological data revealed some regional metric differences in external morphology, but all the head-and-body to tail (HB: tail) ratios match that of R. d. chakae, and consequently, molecular and morphological data are congruent. These data confirm a range extension of R. d. chakae, supporting the utility of COI barcodes in the identification of small mammalian species.

HTML

XML

PDF

DOI: 10.3897/vz.71.e64781

Authors: Javier Lobón-Rovira, Werner Conradie, David Buckley Iglesias, Raffael Ernst, Luis Veríssimo, Ninda Baptista, Pedro Vaz Pinto

Abstract: Abstract The taxonomy of Angolan Hemidactylus has recently been revised. However, the lack of fresh material for some groups and regions, has led to the misidentification of some taxa and an underestimation of actual diversity in others. To shed light on the evolutionary history and systematics of Angolan Hemidactylus, we generated a new phylogenetic hypothesis for the group, and updated the taxonomy following an integrative approach. This resulted in the description of four new species (H. pfindaensis sp. nov., H. faustus sp. nov., H. carivoensis sp. nov. and H. cinganji sp. nov.), the reevaluation of two recently described species (H. vernayi and H. paivae) and the synonymization of a recently described species (H. hannahsabinnae). We estimate divergence times for these lineages, providing a preliminary interpretation of their speciation process. Moreover, we suggest and outline 13 Angolan Main Biogeographic Units (AMBUs) in the area, defining a new biogeographic context for future works on Angolan herpetofauna. We now recognize eleven Hemidactylus species in Angola, and we provide here a new morphological key for Angolan Hemidactylus to help with identifications and species assignments in this group.

HTML

XML

PDF

DOI: 10.3897/vz.71.e66871

Authors: Amanda Kaatz, Jesse L. Grismer, L. Lee Grismer

Abstract: Abstract By studying ecomorophology in the context of phylogeny, researchers can parse out similarity due to common ancestry versus that due to convergence. This is especially true among relatively closely related species where both phylogenetic and environmental constraints may be operating simultaneously. We explored these issues among three karst-associated species from two lineages of Cyrtodactylus—the sworderi group from Peninsular Malaysia and the swamp clade from Peninsular Malaysia and western Indonesia of the agamensis group. A stochastic character mapping analysis using five different habitat preferences corroborated a larger previous analysis in recovering a general habitat preference as an ancestral condition for all habitat preferences and a karst habitat preference in C. guakanthanensis and C. gunungsenyumensis of the sworderi group and C. metropolis of the swamp clade as convergently evolved. Multivariate and univariate analyses of 10 morphometric characters revealed that the ecomorphological similarity between C. guakanthanensis and C. gunungsenyumensis of the sworderi group was also convergent. The ecomorphology of C. metropolis of the swamp clade was intermediate between a karst-adapted ecomorphology and a swamp-generalists ecomorphology. Of the 10 morphometric characters employed in this analysis, only three—head length, head width, and forelimb width—showed any signs of phylogenetic signal. Cyrtodactylus metropolis is hypothesized to be a recently refuged swamp-dwelling species that frequented the Batu Caves environments prior to urbanization of the surrounding swamp habitat to which it is now confined.

HTML

XML

PDF

DOI: 10.3897/vz.71.e65952

Authors: Martin Päckert, Jens Hering, Abdelkrim Ait Belkacem, Yue-Hua Sun, Sabine Hille, Davaa Lkhagvasuren, Safiqul Islam, Jochen Martens

Abstract: Abstract The Old World sparrows include some of the best-studied passerine species, such as the cosmopolitan human commensal, the house sparrow (Passer domesticus) as well as poorly studied narrow-range endemics like the Iago sparrow (P. iagoensis) from the Cape Verde Archipelago or specialists from extreme environments like the desert sparrow (P. simplex). It is therefore notable that to date the most complete phylogenetic hypothesis for the Old World sparrows comprised only ten of 43 currently accepted species. With this study we provide an updated phylogeny of Passeridae covering about two third of the family’s species richness. Though still being far from taxon-complete, this new phylogenetic hypothesis provides firm evidence to clarify some open taxonomic questions. All genus-level taxa were reciprocally monophyletic with strong support. Contrary to previous classifications, bush sparrows and rock sparrows were not sister taxa, and therefore their classification in separate genera Gymnoris and Petronia is justified. Plumage color traits like the yellow throat patch of the latter two genera or head color pattern in Passer species do not provide reliable phylogenetic information, except for the large-sized African grey-headed sparrows that resulted as a monophyletic group (P. diffusus, P. griseus, P. gongoensis). Unexpectedly, two small-sized species, P. eminibey and P. luteus that to date are regarded as close relatives were firmly nested in two separate clades of Passer sparrows. Therefore, their separate generic treatment under Sorella eminibey and Auripasser luteus (together with A. euchlorus) does not seem justified.

HTML

XML

PDF

DOI: 10.3897/vz.71.e65969

Authors: L. Lee Grismer, Hai Ngoc Ngo, Shuo Qi, Ying-Yong Wang, Minh Duc Le, Thomas Ziegler

Abstract: Abstract Maximum likelihood (ML) and Bayesian inference (BI) analyses using two mitochondrial (16S and cyt b) and two nuclear (CMOS and RAG1) genes and 103 specimens recovered the first phylogenies of all 23 extant species of Goniurosaurus. The analyses strongly supported the recognition of four monophyletic species groups with identical inter-specific relationships within the kuroiwae, lichtenfelderi, and yingdeensis groups but discordant topologies at some nodes within the luii group. Both analyses recovered a polyphyletic G. luii with respect to G. kadoorieorum, and owing to the lack of diagnostic characters in the latter, it is considered a junior synonym of G. luii. A stochastic character mapping analysis of karst versus non-karst habitat preference suggested that karstic landscapes may have played a major role in the evolution and diversification of Goniurosaurus. A karst habitat preference is marginally supported as the most probable ancestral condition for Goniurosaurus as well as for the kuroiwae, luii, and yingdeensis groups. However, a non-karst habitat preference is marginally supported as the most probable ancestral condition for the lichtenfelderi group. Multivariate and univariate ecomorphological analyses of the karst-adapted G. catbaensis, G. huuliensis, and G. luii of the luii group and the granite-stream-adapted G. lichtenfelderii of the lichtenfelderi group demonstrated that their markedly statistically different body shapes may be an adaptive response that contributes to habitat partitioning in areas of northern Vietnam where they are nearly sympatric.

HTML

XML

PDF

DOI: 10.3897/vz.71.e60800

Authors: Daniel Jablonski, Marco Antônio Ribeiro-Júnior, Shai Meiri, Erez Maza, Oleg V. Kukushkin, Marina Chirikova, Angelika Pirosová, Dušan Jelić, Peter Mikulíček, David Jandzik

Abstract: The Levant represents one of the most important reptile diversity hotspots and centers of endemism in the Western Palearctic. The region harbored numerous taxa in glacial refugia during the Pleistocene climatic oscillations. Due to the hostile arid conditions in the warmer periods they were not always able to spread or come into contact with populations from more distant regions. One large and conspicuous member of the Levantine herpetofauna is the legless anguid lizard Pseudopus apodus. This species is distributed from the Balkans to Central Asia with a portion of its range running along the eastern Mediterranean coast. Mitochondrial and nuclear DNA sequences, microsatellite genotypes, and morphology show that populations in this region differ from the two named subspecies and presumably had a long independent evolutionary history during the Quaternary. Here we describe the Levantine population as a new subspecies and present biogeographic scenarios for its origin and diversification. The new subspecies is genetically highly diverse, and it forms a sister lineage to Pseudopus from the remaining parts of the range according to mtDNA. It is the largest-bodied of the three subspecies, but occupies the smallest range.

HTML

XML

PDF

DOI: 10.3897/vz.71.e60921

Authors: Evan S. H. Quah, L. Lee Grismer, Perry L. Wood Jr., Kelvin K. P. Lim, Paul Y. Imbun, M. S. Shahrul Anuar

Abstract: The taxonomic status of the ranid frog Abavorana luctuosa (Peters, 1871) was investigated using a combination of molecular and morphological data. The analyses revealed that A. luctuosa sensu lato is composed of two species in Borneo. One of these species agrees with the description of Rana decorata Mocquard, 1890 which is resurrected in the combination Abavorana decorata comb. nov. (Mocquard, 1890). Abavorana decorata is recovered as the sister lineage to the remainder of Abavorana and differs by a 16.0–17.0 % uncorrected pairwise sequence divergence from its congeners A. nazgul and A. luctuosa, respectively. It is distinguishable morphologically from A. luctuosa and A. nazgul by its ventral pattern (bold, black and white reticulations on its venter along with bold banding on the underside of hind limbs vs. generally immaculate and spotted in the latter two species), and a prominent white streak beneath the eye and/or tympanum extending to the corner of the jaw. Abavorana decorata further differs from A. luctuosa by having a significantly wider head and snout, larger interorbital and tympanum diameters, longer femur in both sexes, and various combinations of other mensural characters. Both species are sympatric in Borneo and this discovery adds to a growing number of widespread Sundaic species shown to be species complexes with distinct forms in Borneo.

HTML

XML

PDF

DOI: 10.3897/vz.71.e59461

Authors: Juan José Torres-Ramírez, Teddy Angarita-Sierra, Mario Vargas-Ramírez

Abstract: In northern South America, amphisbaenians are rarely seen among the herpetofauna.Thus, general knowledge about them is very poor. During a herpetological survey in 2012 at Casanare, Colombia, we found two specimens of an unusual Amphisbaena. A third specimen sharing the same morphotype labeled Amphisbaena sp. from Vichada department was found deposided in an Colombian reptile collection. Based on morphological analyses together with phylogenetic analyses of 1029 base pairs of the mitochondrial DNA (mtDNA), we describe a new species of Amphisbaena that inhabits in the Orinoquian region of Colombia. The new species is part of a phylogenetic clade together with A. mertensii and A. cunhai (central-southern Brazil), exhibiting a great genetic distance (26.1–28.9%) between the newly identified lineage versus those taxa, and versus the sympatric taxa A. alba and A. fuliginosa. Morphologically, this new Amphisbaena can be distinguished from their congeners by characters combination of number of preocloacal pores, absence of malar scale, postgenial scales and body and caudal annuli counts. Amphisbaena gracilis is on morphology grounds the most similar species. However, the new species can be distinguished from it by having higher body annuli counts, angulus ories aliegned with the edges of the ocular scales and center of frontal scales, less number of large middorsal segments of the first and second body annulus, and rostral scale visible from above. The description of this new Amphisbaena species points out the urgent need to increase the knowledge of worm lizards in Colombia

HTML

XML

PDF

DOI: 10.3897/vz.71.e59495

Authors: Aurélien Miralles, Teddy Bruy, Angelica Crottini, Andolalao Rakotoarison, Fanomezana M. Ratsoavina, Mark D. Scherz, Robin Schmidt, Jörn Köhler, Frank Glaw, Miguel Vences

Abstract: The Paroedura bastardi clade, a subgroup of the Madagascan gecko genus Paroedura, currently comprises four nominal species: P. bastardi, supposedly widely distributed in southern and western Madagascar, P. ibityensis, a montane endemic, and P. tanjaka and P. neglecta, both restricted to the central west region of the island. Previous work has shown that Paroedura bastardi is a species complex with several strongly divergent mitochondrial lineages. Based on one mitochondrial and two nuclear markers, plus detailed morphological data, we undertake an integrative revision of this species complex. Using a representative sampling for seven nuclear and five mitochondrial genes we furthermore propose a phylogenetic hypothesis of relationships among the species in this clade. Our analyses reveal at least three distinct and independent evolutionary lineages currently referred to P. bastardi. Conclusive evidence for the species status of these lineages comes from multiple cases of syntopic occurrence without genetic admixture or morphological intermediates, suggesting reproductive isolation. We discuss the relevance of this line of evidence and the conditions under which concordant differentiation in unlinked loci under sympatry provides a powerful approach to species delimitation, and taxonomically implement our findings by (1) designating a lectotype for Paroedura bastardi, now restricted to the extreme South-East of Madagascar, (2) resurrecting of the binomen Paroedura guibeae Dixon & Kroll, 1974, which is applied to the species predominantly distributed in the South-West, and (3) describing a third species, Paroedura rennerae sp. nov., which has the northernmost distribution within the species complex.

HTML

XML

PDF